NO29G01740, NO29G01740 (gene) Nannochloropsis oceanica

Overview
NameNO29G01740
Unique NameNO29G01740
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2985
Alignment locationchr29:551456..554440 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr29genomechr29:551456..554440 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006457protein folding
GO:0015031protein transport
Vocabulary: INTERPRO
TermDefinition
IPR036611Trigger_fac_ribosome-bd_sf
IPR008881Trigger_fac_ribosome-bd_bac
Homology
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BLAST of NO29G01740 vs. NCBI_GenBank
Match: EWM20183.1 (hypothetical protein Naga_101216g3 [Nannochloropsis gaditana])

HSP 1 Score: 147.9 bits (372), Expect = 3.800e-32
Identity = 80/108 (74.07%), Postives = 89/108 (82.41%), Query Frame = 0 
Query:    1 MLPQRAGRFLCCLVLSTSTLVSAFLPPSLLAASRHISIAGSSSRLFLAGEVFPEKTPGVEVRRVADTDAATGIGKYGIKGMVAASEYKKIYAESQKEHKKQANFPGFR 109
            MLP RA     CL+LS ST VSAFLPPS +      SIA SSS+L+LAGEVFPE++PGVEVRRVADTDA TGIG+YGIKGMV+AS+YK IY ESQKEHKKQANFPGFR
Sbjct:   35 MLPSRAPAL--CLLLSLST-VSAFLPPSPVIPQLSHSIASSSSKLYLAGEVFPERSPGVEVRRVADTDAGTGIGRYGIKGMVSASDYKNIYRESQKEHKKQANFPGFR 139
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BLAST of NO29G01740 vs. NCBI_GenBank
Match: XP_005853397.1 (trigger factor [Nannochloropsis gaditana CCMP526] >XP_005856190.1 trigger factor [Nannochloropsis gaditana CCMP526] >EKU20170.1 trigger factor [Nannochloropsis gaditana CCMP526] >EKU22959.1 trigger factor [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 73.2 bits (178), Expect = 1.200e-9
Identity = 52/168 (30.95%), Postives = 81/168 (48.21%), Query Frame = 0 
Query:   23 AFLPPSLLAASRHISIAGSSSRL-FLAGEVFPEKTPGVEVRRVA--DTDAATGIGKYGIKGMVAASEYKKIYAESQKEHKKQANFPGFRAGKIPPGLMVAVREFSIVTAIETAALAALEPYELEAVIPPNGIPELKVNVPGDVTAFARAYNGKDDFEFDCEVEGTGVP 188
            AF+  S LA     S+    S +  + GE+ P   P ++V RV+  D  A   +  Y ++  +   + KK Y ++ K     ANFPGFR G +PP  +V V+  ++  +I  A   A+E + LE    P    +L++ VP      A+ Y    D  F CE++  GVP
Sbjct:   24 AFVLSSPLATPNQRSVVCLRSTIQNVIGEILPTLDPTLKVTRVSVEDPSAERPVCGYLVEAEIYGPDVKKTYNQALKAGTLNANFPGFRKGIMPPHALVGVKLSAVTASIMDACRTAMEMHGLENF--PANERKLRMKVPQSTEELAKQYEIGTDLTFACEIDAIGVP 189
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BLAST of NO29G01740 vs. NCBI_GenBank
Match: EWM21225.1 (trigger factor [Nannochloropsis gaditana])

HSP 1 Score: 73.2 bits (178), Expect = 1.200e-9
Identity = 52/168 (30.95%), Postives = 81/168 (48.21%), Query Frame = 0 
Query:   23 AFLPPSLLAASRHISIAGSSSRL-FLAGEVFPEKTPGVEVRRVA--DTDAATGIGKYGIKGMVAASEYKKIYAESQKEHKKQANFPGFRAGKIPPGLMVAVREFSIVTAIETAALAALEPYELEAVIPPNGIPELKVNVPGDVTAFARAYNGKDDFEFDCEVEGTGVP 188
            AF+  S LA     S+    S +  + GE+ P   P ++V RV+  D  A   +  Y ++  +   + KK Y ++ K     ANFPGFR G +PP  +V V+  ++  +I  A   A+E + LE    P    +L++ VP      A+ Y    D  F CE++  GVP
Sbjct:   24 AFVLSSPLATPNQRSVVCLRSTIQNVIGEILPTLDPTLKVTRVSVEDPSAEHPVCGYLVEAEIYGPDVKKTYNQALKAGTLNANFPGFRKGVMPPHALVGVKLSAVTASIMDACRTAMEMHGLENF--PANERKLRMKVPQSTEELAKQYEIGTDLTFACEIDAIGVP 189
The following BLAST results are available for this feature:
BLAST of NO29G01740 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Position :
0
Zoom :
x 1
5001000150020002500SequenceEWM20183.1XP_005853397.1EWM21225.1
Match NameE-valueIdentityDescription
EWM20183.13.800e-3274.07hypothetical protein Naga_101216g3 [Nannochloropsi... [more]
XP_005853397.11.200e-930.95trigger factor [Nannochloropsis gaditana CCMP526] ... [more]
EWM21225.11.200e-930.95trigger factor [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR097ncniR097Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO29G01740.1NO29G01740.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO29G01740.1NO29G01740.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO29G01740 ID=NO29G01740|Name=NO29G01740|organism=Nannochloropsis oceanica|type=gene|length=2985bp
GGTTGATGAATCAAATTAAGGGCCCATACGGAAGAAAAGGGAGACGGAGA
GAGGGTTGGAAGGAGGTAGGGTGGAGAGGTACCGTTTGAGGATAACCTCG
ATGCAAGTTACGCAGTAAGGAGAGGGAAGCCAGGGCATGTCTGCGAAAAG
AAAGAGGGAGGTAGGGAGTATGGGAGAGAAGGAGGGAGGGATCAGTCGGC
TACAGAGCGCTTATTAGACGTGTTCTCTCTGTACATTATTGGTACGATCA
CCCCTCCCTCCCTACCTACCTGCGCCTGCCCTGTATTCTGCATAATTCCC
ACTGTCCAAGTCGTCCATGCACACTGAGCACTCACTTCCCTCCTCCGGCT
CGTGGTGGGGGTATGGATGAGGCTGGATATTGTCCTCGCCGTTGCTACTC
ATGGAAGGAGGCAGGGAGGAAGGGAGGGGAGGGGTGACAGCCTACTGCTG
CGGCGGTGGCTACGGTCTGCGCCTGCGGAGGGTTAGCATGGAGTGGAAAA
AGAAGTAAGATGGCATATATACAGCGGGTAAGGGGGGAAAGAGGGGCTAG
GCGCGATTCTCCAGGTAAATAAAGGGGACGTAGACGAATGTGGGTCGATG
CCCGCTTGGCTGCCGCTTGGTAAAGGCTTGCTTATAAACAAGGCAGGAGG
ACCGATGCGCACCGTCTCTGTGGTATATAGGAGCTTGCTTCATAAAAGGT
CATGCGGGGGTAGTGCGTGAAGCGCAAAAAGCAGCAACAAACCTCGGGGG
CCGGGCCAGTGGAAGGGAAGGGGAATGCACAGTAACGACGACGACAGTGC
GTTCTCGGGCGAGGCTTTTTCCTCGTTCTCGCTCTTATCCCTCCTCAAGC
AACACCAATGATACTCCTCTATAGTCAAGGCCCGCTACACACAGCGTTGT
TCAACTGAACAGGGAGACCTTTGCGCGCTGATTTGGCACTCGTATTGCTT
GCTTTACTGGCGCGGAAGCGAGGTCCATCTCCACATAGACCTGTTGTCGA
GGCAAACGACAAGCACTGGCAGCTCTCCTTTCCTTTCACTTCACTTGCGG
CACACCACCACGCCAGAAGCAACGACGCCCATGCCCACGTCCCATGCGCA
ACTTCCATTACCGCGCTTCTCACTACTCCTGATTGGCGTCCCAAACCTCA
CACGAATACAGACACACATACACGAGGAGTTCCTTTCCCCCCCATTCAAC
GCGAAGCGATGCTACCACAAAGAGCGGGCCGTTTCCTTTGCTGCCTCGTC
CTGAGCACCAGCACCCTTGTCTCCGCCTTCCTCCCTCCCTCCCTCCTCGC
GGCCTCTCGACACATTTCGATTGCGGGCAGCAGCAGTAGGCTCTTTCTAG
CAGGCGAGGTCTTCCCCGAGAAAACGCCTGGAGTGGAGGTCCGACGgtgc
gtgcttcggaatggagggagggagggaaggagggagggagggagggaggg
ggaattgtggtaatgaaacaaatgatttgaggggaggaaagcatttgggg
gggggaacgccgtagttgggagatggatatgagcatcatgacaagtagat
gatacacgagtgtttgcactgggaccaaaacgactcggtctgactcctct
cccctctctccctctcttcctgcactcatctctccctccctccctccctc
gaacatctcacagAGTGGCGGATACGGACGCTGCCACGGGTATCGGGAAG
TATGGCATTAAAGgtacacgcccctctttccctctctccctccctccctc
cctccctccctccctccctccttccctcactcactcaatccctcccttcc
ttctcatcctactttctctcgcattctctcacctcctctccctccctccc
tccatccctccttccccctcacccttagGCATGGTCGCCGCCAGTGAATA
CAAGAAGATTTACGCCGAGTCCCAGAAGGAGCACAAGAAGCAAGCTAATT
TTCCCGGCTTTCGgtacgtctcgccatcccccctccctccctccctccct
ccctccctttttccctccgacccatcgccactgccatgttcctccgcgcg
agtcctcgtactcattctctctccctccctccctccctccctccctcagT
GCCGGCAAGATTCCTCCCGGGCTGATGGTGGCCGTGCGAGAGTTCTCCAT
CGTCACTGCTATCGAGACGGCTGCGCTTGCTGCTCTTGAGCCCTATGAGC
TCGAGGCCGTCATTCCGCCCAACGGCATCCCCGAACTCAAGgtacctctc
tccctttttccctccctccctccctccctccctccctccctccctccctt
ctaggagcaggctatcaattctgagcactcatccacctctccctccctcc
ctctctccccatcgcagGTGAATGTGCCGGGGGACGTAACGGCTTTCGCC
CGGGCTTACAATGGCAAGGACGATTTTGAATTTGATTGCGAGGTGGAGGG
CACCGGTGTACCCAAGTTgtacgtccctccctccctccctccctccctcc
ctcccttctataacctttcctcctgcgtgacgtcgcatatgtcctcacac
ccttccttccctccctcccacacttccttcctcccttcctccctccctct
ccccttgaaacccgtacctccatagGAATGACGAGGTGGAGGAGGCGGCG
GCAGCAGCGGCAGCAGGGGCCTCGGCGACGGATGTGATAGACGTGACTGA
CGTGATGGACACAAAGGCCGAGGAGGTGGTGGGCTAGACGACTAAGGGGG
AGAGGGAGGAAGGGAAGGAGAGACGGAGGTAATTATCTTGTCATTTCCCC
AGTCAAGGGTGTAGATGGGAAGGGAAGGGAGACGAGAGGGGACGGGAAGG
AAAGAGGATTCTTTTGGAAGGAAGTAAGCAATAAACACAAAGCTTATGGG
AGGGAAAACCAGCAGTGGGAAGAGGGAAAGCAGTCTGATGCCACGTCTAC
ACCTCTAAAATAAAATTAACACCCACCAACGACAA
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protein sequence of NO29G01740.1

>NO29G01740.1-protein ID=NO29G01740.1-protein|Name=NO29G01740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=226bp
MLPQRAGRFLCCLVLSTSTLVSAFLPPSLLAASRHISIAGSSSRLFLAGE
VFPEKTPGVEVRRVADTDAATGIGKYGIKGMVAASEYKKIYAESQKEHKK
QANFPGFRAGKIPPGLMVAVREFSIVTAIETAALAALEPYELEAVIPPNG
IPELKVNVPGDVTAFARAYNGKDDFEFDCEVEGTGVPKLNDEVEEAAAAA
AAGASATDVIDVTDVMDTKAEEVVG*
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Synonyms
Publications