NO29G01740.1, NO29G01740.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO29G01740.1
Unique Name	NO29G01740.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2134
Alignment location	chr29:551456..554440 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr29	genome	chr29:551456..554440 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO29G01740.1 vs.
Match: EWM20183.1 (hypothetical protein Naga_101216g3 [Nannochloropsis gaditana])

HSP 1 Score: 147.9 bits (372), Expect = 3.800e-32
Identity = 80/108 (74.07%), Postives = 89/108 (82.41%), Query Frame = 0

Query:    1 MLPQRAGRFLCCLVLSTSTLVSAFLPPSLLAASRHISIAGSSSRLFLAGEVFPEKTPGVEVRRVADTDAATGIGKYGIKGMVAASEYKKIYAESQKEHKKQANFPGFR 109
            MLP RA     CL+LS ST VSAFLPPS +      SIA SSS+L+LAGEVFPE++PGVEVRRVADTDA TGIG+YGIKGMV+AS+YK IY ESQKEHKKQANFPGFR
Sbjct:   35 MLPSRAPAL--CLLLSLST-VSAFLPPSPVIPQLSHSIASSSSKLYLAGEVFPERSPGVEVRRVADTDAGTGIGRYGIKGMVSASDYKNIYRESQKEHKKQANFPGFR 139

The following BLAST results are available for this feature:

BLAST of NO29G01740.1 vs.

BLAST of NO29G01740.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM20183.1	3.800e-32	74.07	hypothetical protein Naga_101216g3 [Nannochloropsi...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO29G01740	NO29G01740	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO29G01740.1	NO29G01740.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO29G01740.1.cds1	NO29G01740.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO29G01740.1.cds2	NO29G01740.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO29G01740.1.cds3	NO29G01740.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO29G01740.1.cds4	NO29G01740.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO29G01740.1.cds5	NO29G01740.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO29G01740.1.cds6	NO29G01740.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr29:551456..554440-
coding sequence from alignment at chr29:551456..554440-

mRNA sequence

>NO29G01740.1 ID=NO29G01740.1|Name=NO29G01740.1|organism=Nannochloropsis oceanica|type=mRNA|length=2134bp
GGTTGATGAATCAAATTAAGGGCCCATACGGAAGAAAAGGGAGACGGAGA
GAGGGTTGGAAGGAGGTAGGGTGGAGAGGTACCGTTTGAGGATAACCTCG
ATGCAAGTTACGCAGTAAGGAGAGGGAAGCCAGGGCATGTCTGCGAAAAG
AAAGAGGGAGGTAGGGAGTATGGGAGAGAAGGAGGGAGGGATCAGTCGGC
TACAGAGCGCTTATTAGACGTGTTCTCTCTGTACATTATTGGTACGATCA
CCCCTCCCTCCCTACCTACCTGCGCCTGCCCTGTATTCTGCATAATTCCC
ACTGTCCAAGTCGTCCATGCACACTGAGCACTCACTTCCCTCCTCCGGCT
CGTGGTGGGGGTATGGATGAGGCTGGATATTGTCCTCGCCGTTGCTACTC
ATGGAAGGAGGCAGGGAGGAAGGGAGGGGAGGGGTGACAGCCTACTGCTG
CGGCGGTGGCTACGGTCTGCGCCTGCGGAGGGTTAGCATGGAGTGGAAAA
AGAAGTAAGATGGCATATATACAGCGGGTAAGGGGGGAAAGAGGGGCTAG
GCGCGATTCTCCAGGTAAATAAAGGGGACGTAGACGAATGTGGGTCGATG
CCCGCTTGGCTGCCGCTTGGTAAAGGCTTGCTTATAAACAAGGCAGGAGG
ACCGATGCGCACCGTCTCTGTGGTATATAGGAGCTTGCTTCATAAAAGGT
CATGCGGGGGTAGTGCGTGAAGCGCAAAAAGCAGCAACAAACCTCGGGGG
CCGGGCCAGTGGAAGGGAAGGGGAATGCACAGTAACGACGACGACAGTGC
GTTCTCGGGCGAGGCTTTTTCCTCGTTCTCGCTCTTATCCCTCCTCAAGC
AACACCAATGATACTCCTCTATAGTCAAGGCCCGCTACACACAGCGTTGT
TCAACTGAACAGGGAGACCTTTGCGCGCTGATTTGGCACTCGTATTGCTT
GCTTTACTGGCGCGGAAGCGAGGTCCATCTCCACATAGACCTGTTGTCGA
GGCAAACGACAAGCACTGGCAGCTCTCCTTTCCTTTCACTTCACTTGCGG
CACACCACCACGCCAGAAGCAACGACGCCCATGCCCACGTCCCATGCGCA
ACTTCCATTACCGCGCTTCTCACTACTCCTGATTGGCGTCCCAAACCTCA
CACGAATACAGACACACATACACGAGGAGTTCCTTTCCCCCCCATTCAAC
GCGAAGCGATGCTACCACAAAGAGCGGGCCGTTTCCTTTGCTGCCTCGTC
CTGAGCACCAGCACCCTTGTCTCCGCCTTCCTCCCTCCCTCCCTCCTCGC
GGCCTCTCGACACATTTCGATTGCGGGCAGCAGCAGTAGGCTCTTTCTAG
CAGGCGAGGTCTTCCCCGAGAAAACGCCTGGAGTGGAGGTCCGACGAGTG
GCGGATACGGACGCTGCCACGGGTATCGGGAAGTATGGCATTAAAGGCAT
GGTCGCCGCCAGTGAATACAAGAAGATTTACGCCGAGTCCCAGAAGGAGC
ACAAGAAGCAAGCTAATTTTCCCGGCTTTCGTGCCGGCAAGATTCCTCCC
GGGCTGATGGTGGCCGTGCGAGAGTTCTCCATCGTCACTGCTATCGAGAC
GGCTGCGCTTGCTGCTCTTGAGCCCTATGAGCTCGAGGCCGTCATTCCGC
CCAACGGCATCCCCGAACTCAAGGTGAATGTGCCGGGGGACGTAACGGCT
TTCGCCCGGGCTTACAATGGCAAGGACGATTTTGAATTTGATTGCGAGGT
GGAGGGCACCGGTGTACCCAAGTTGAATGACGAGGTGGAGGAGGCGGCGG
CAGCAGCGGCAGCAGGGGCCTCGGCGACGGATGTGATAGACGTGACTGAC
GTGATGGACACAAAGGCCGAGGAGGTGGTGGGCTAGACGACTAAGGGGGA
GAGGGAGGAAGGGAAGGAGAGACGGAGGTAATTATCTTGTCATTTCCCCA
GTCAAGGGTGTAGATGGGAAGGGAAGGGAGACGAGAGGGGACGGGAAGGA
AAGAGGATTCTTTTGGAAGGAAGTAAGCAATAAACACAAAGCTTATGGGA
GGGAAAACCAGCAGTGGGAAGAGGGAAAGCAGTCTGATGCCACGTCTACA
CCTCTAAAATAAAATTAACACCCACCAACGACAA

protein sequence of NO29G01740.1

>NO29G01740.1-protein ID=NO29G01740.1-protein|Name=NO29G01740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=226bp
MLPQRAGRFLCCLVLSTSTLVSAFLPPSLLAASRHISIAGSSSRLFLAGE
VFPEKTPGVEVRRVADTDAATGIGKYGIKGMVAASEYKKIYAESQKEHKK
QANFPGFRAGKIPPGLMVAVREFSIVTAIETAALAALEPYELEAVIPPNG
IPELKVNVPGDVTAFARAYNGKDDFEFDCEVEGTGVPKLNDEVEEAAAAA
AAGASATDVIDVTDVMDTKAEEVVG*

mRNA from alignment at chr29:551456..554440-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO29G01740.1 ID=NO29G01740.1|Name=NO29G01740.1|organism=Nannochloropsis oceanica|type=mRNA|length=2985bp|location=Sequence derived from alignment at chr29:551456..554440- (Nannochloropsis oceanica)
GGTTGATGAATCAAATTAAGGGCCCATACGGAAGAAAAGGGAGACGGAGA
GAGGGTTGGAAGGAGGTAGGGTGGAGAGGTACCGTTTGAGGATAACCTCG
ATGCAAGTTACGCAGTAAGGAGAGGGAAGCCAGGGCATGTCTGCGAAAAG
AAAGAGGGAGGTAGGGAGTATGGGAGAGAAGGAGGGAGGGATCAGTCGGC
TACAGAGCGCTTATTAGACGTGTTCTCTCTGTACATTATTGGTACGATCA
CCCCTCCCTCCCTACCTACCTGCGCCTGCCCTGTATTCTGCATAATTCCC
ACTGTCCAAGTCGTCCATGCACACTGAGCACTCACTTCCCTCCTCCGGCT
CGTGGTGGGGGTATGGATGAGGCTGGATATTGTCCTCGCCGTTGCTACTC
ATGGAAGGAGGCAGGGAGGAAGGGAGGGGAGGGGTGACAGCCTACTGCTG
CGGCGGTGGCTACGGTCTGCGCCTGCGGAGGGTTAGCATGGAGTGGAAAA
AGAAGTAAGATGGCATATATACAGCGGGTAAGGGGGGAAAGAGGGGCTAG
GCGCGATTCTCCAGGTAAATAAAGGGGACGTAGACGAATGTGGGTCGATG
CCCGCTTGGCTGCCGCTTGGTAAAGGCTTGCTTATAAACAAGGCAGGAGG
ACCGATGCGCACCGTCTCTGTGGTATATAGGAGCTTGCTTCATAAAAGGT
CATGCGGGGGTAGTGCGTGAAGCGCAAAAAGCAGCAACAAACCTCGGGGG
CCGGGCCAGTGGAAGGGAAGGGGAATGCACAGTAACGACGACGACAGTGC
GTTCTCGGGCGAGGCTTTTTCCTCGTTCTCGCTCTTATCCCTCCTCAAGC
AACACCAATGATACTCCTCTATAGTCAAGGCCCGCTACACACAGCGTTGT
TCAACTGAACAGGGAGACCTTTGCGCGCTGATTTGGCACTCGTATTGCTT
GCTTTACTGGCGCGGAAGCGAGGTCCATCTCCACATAGACCTGTTGTCGA
GGCAAACGACAAGCACTGGCAGCTCTCCTTTCCTTTCACTTCACTTGCGG
CACACCACCACGCCAGAAGCAACGACGCCCATGCCCACGTCCCATGCGCA
ACTTCCATTACCGCGCTTCTCACTACTCCTGATTGGCGTCCCAAACCTCA
CACGAATACAGACACACATACACGAGGAGTTCCTTTCCCCCCCATTCAAC
GCGAAGCGATGCTACCACAAAGAGCGGGCCGTTTCCTTTGCTGCCTCGTC
CTGAGCACCAGCACCCTTGTCTCCGCCTTCCTCCCTCCCTCCCTCCTCGC
GGCCTCTCGACACATTTCGATTGCGGGCAGCAGCAGTAGGCTCTTTCTAG
CAGGCGAGGTCTTCCCCGAGAAAACGCCTGGAGTGGAGGTCCGACGGTGC
GTGCTTCGGAATGGAGGGAGGGAGGGAAGGAGGGAGGGAGGGAGGGAGGG
GGAATTGTGGTAATGAAACAAATGATTTGAGGGGAGGAAAGCATTTGGGG
GGGGGAACGCCGTAGTTGGGAGATGGATATGAGCATCATGACAAGTAGAT
GATACACGAGTGTTTGCACTGGGACCAAAACGACTCGGTCTGACTCCTCT
CCCCTCTCTCCCTCTCTTCCTGCACTCATCTCTCCCTCCCTCCCTCCCTC
GAACATCTCACAGAGTGGCGGATACGGACGCTGCCACGGGTATCGGGAAG
TATGGCATTAAAGGTACACGCCCCTCTTTCCCTCTCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCTTCCCTCACTCACTCAATCCCTCCCTTCC
TTCTCATCCTACTTTCTCTCGCATTCTCTCACCTCCTCTCCCTCCCTCCC
TCCATCCCTCCTTCCCCCTCACCCTTAGGCATGGTCGCCGCCAGTGAATA
CAAGAAGATTTACGCCGAGTCCCAGAAGGAGCACAAGAAGCAAGCTAATT
TTCCCGGCTTTCGGTACGTCTCGCCATCCCCCCTCCCTCCCTCCCTCCCT
CCCTCCCTTTTTCCCTCCGACCCATCGCCACTGCCATGTTCCTCCGCGCG
AGTCCTCGTACTCATTCTCTCTCCCTCCCTCCCTCCCTCCCTCCCTCAGT
GCCGGCAAGATTCCTCCCGGGCTGATGGTGGCCGTGCGAGAGTTCTCCAT
CGTCACTGCTATCGAGACGGCTGCGCTTGCTGCTCTTGAGCCCTATGAGC
TCGAGGCCGTCATTCCGCCCAACGGCATCCCCGAACTCAAGGTACCTCTC
TCCCTTTTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTT
CTAGGAGCAGGCTATCAATTCTGAGCACTCATCCACCTCTCCCTCCCTCC
CTCTCTCCCCATCGCAGGTGAATGTGCCGGGGGACGTAACGGCTTTCGCC
CGGGCTTACAATGGCAAGGACGATTTTGAATTTGATTGCGAGGTGGAGGG
CACCGGTGTACCCAAGTTGTACGTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTTCTATAACCTTTCCTCCTGCGTGACGTCGCATATGTCCTCACAC
CCTTCCTTCCCTCCCTCCCACACTTCCTTCCTCCCTTCCTCCCTCCCTCT
CCCCTTGAAACCCGTACCTCCATAGGAATGACGAGGTGGAGGAGGCGGCG
GCAGCAGCGGCAGCAGGGGCCTCGGCGACGGATGTGATAGACGTGACTGA
CGTGATGGACACAAAGGCCGAGGAGGTGGTGGGCTAGACGACTAAGGGGG
AGAGGGAGGAAGGGAAGGAGAGACGGAGGTAATTATCTTGTCATTTCCCC
AGTCAAGGGTGTAGATGGGAAGGGAAGGGAGACGAGAGGGGACGGGAAGG
AAAGAGGATTCTTTTGGAAGGAAGTAAGCAATAAACACAAAGCTTATGGG
AGGGAAAACCAGCAGTGGGAAGAGGGAAAGCAGTCTGATGCCACGTCTAC
ACCTCTAAAATAAAATTAACACCCACCAACGACAA

Coding sequence (CDS) from alignment at chr29:551456..554440-

>NO29G01740.1 ID=NO29G01740.1|Name=NO29G01740.1|organism=Nannochloropsis oceanica|type=CDS|length=678bp|location=Sequence derived from alignment at chr29:551456..554440- (Nannochloropsis oceanica)
ATGCTACCACAAAGAGCGGGCCGTTTCCTTTGCTGCCTCGTCCTGAGCAC
CAGCACCCTTGTCTCCGCCTTCCTCCCTCCCTCCCTCCTCGCGGCCTCTC
GACACATTTCGATTGCGGGCAGCAGCAGTAGGCTCTTTCTAGCAGGCGAG
GTCTTCCCCGAGAAAACGCCTGGAGTGGAGGTCCGACGAGTGGCGGATAC
GGACGCTGCCACGGGTATCGGGAAGTATGGCATTAAAGGCATGGTCGCCG
CCAGTGAATACAAGAAGATTTACGCCGAGTCCCAGAAGGAGCACAAGAAG
CAAGCTAATTTTCCCGGCTTTCGTGCCGGCAAGATTCCTCCCGGGCTGAT
GGTGGCCGTGCGAGAGTTCTCCATCGTCACTGCTATCGAGACGGCTGCGC
TTGCTGCTCTTGAGCCCTATGAGCTCGAGGCCGTCATTCCGCCCAACGGC
ATCCCCGAACTCAAGGTGAATGTGCCGGGGGACGTAACGGCTTTCGCCCG
GGCTTACAATGGCAAGGACGATTTTGAATTTGATTGCGAGGTGGAGGGCA
CCGGTGTACCCAAGTTGAATGACGAGGTGGAGGAGGCGGCGGCAGCAGCG
GCAGCAGGGGCCTCGGCGACGGATGTGATAGACGTGACTGACGTGATGGA
CACAAAGGCCGAGGAGGTGGTGGGCTAG

Synonyms

Publications