NO29G01730, NO29G01730 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO29G01730 vs. NCBI_GenBank
Match: XP_002294580.1 (pt17531-like protein [Thalassiosira pseudonana CCMP1335] >EED87940.1 pt17531-like protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 173.3 bits (438), Expect = 7.800e-40 Identity = 87/184 (47.28%), Postives = 120/184 (65.22%), Query Frame = 0 Query: 6 KTLLVAAVTMASVSAFVPPAPAAPRTRGVMKMGLDGMIGSSAPFKNFDPLGFAAKADQKTLNKYRESELKHGRVAMLAVLGWIVQEFW-HPLYDGKLSSNPLKALTEVPLIGWAQIFVAINVIEYLQNKIKELPGYRPGDYLGTWEWVEQSDEGWDSYQTKELNNGRLAMVAIAGLIVQDLITG 189 KT ++A + AS +AF P + ++P T + + ++G +AP FDPLG + D T+ YRE+ELK+GRVAM A LGW + HP ++ +LS++PLKA+ E+P +GW Q + IE+L +IKE PGY PGD LG WV+ SDEGW YQ KELNNGRLAM+AI G++ QD+ G Sbjct: 2 KTAILATLA-ASAAAFAPASISSPSTTQLSAWRDEVVVGITAPVGFFDPLGLSKGKDDATMAYYREAELKNGRVAMAACLGWYLNAGGVHPAFNSELSNDPLKAMVELPAVGWLQFVLGCGAIEWLGQQIKERPGYVPGDLLGASYWVDNSDEGWVMYQNKELNNGRLAMLAIVGMVYQDVFVG 184
BLAST of NO29G01730 vs. NCBI_GenBank
Match: OEU11937.1 (chlorophyll a/b-binding protein [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 169.5 bits (428), Expect = 1.100e-38 Identity = 81/175 (46.29%), Postives = 110/175 (62.86%), Query Frame = 0 Query: 15 MASVSAFVPPAPAAPRTRGVMKMGLDGMIGSSAPFKNFDPLGFAAKADQKTLNKYRESELKHGRVAMLAVLGWIVQEFW-HPLYDGKLSSNPLKALTEVPLIGWAQIFVAINVIEYLQNKIKELPGYRPGDYLGTWEWVEQSDEGWDSYQTKELNNGRLAMVAIAGLIVQDLITG 189 + S +AF PA + +T + + ++G +AP FDPLG + D T++ YRE+ELKHGRVAM A LGW + HP + LS+NPL+A ++P +GW Q + IE++ KIK+ PGY+ GD LG WV+ SDEGW YQ KE+NNGRLAMVA G++ QDL G Sbjct: 10 VGSAAAFA-PAQTSQKTTSLSAWKDETVVGVTAPMGYFDPLGLSRNKDDATMSMYREAELKHGRVAMAATLGWYLNAAGVHPAFQSSLSNNPLEAAKQLPAVGWVQFVLGCGAIEWMAEKIKDRPGYKAGDVLGAAYWVDDSDEGWVDYQNKEVNNGRLAMVAFMGILTQDLYFG 183
BLAST of NO29G01730 vs. NCBI_GenBank
Match: GAX14579.1 (hypothetical protein FisN_6Lh357 [Fistulifera solaris]) HSP 1 Score: 169.5 bits (428), Expect = 1.100e-38 Identity = 84/175 (48.00%), Postives = 107/175 (61.14%), Query Frame = 0 Query: 15 MASVSAFVPPAPAAPRTRGVMKMGLDGMIGSSAPFKNFDPLGFAAKADQKTLNKYRESELKHGRVAMLAVLGW-IVQEFWHPLYDGKLSSNPLKALTEVPLIGWAQIFVAINVIEYLQNKIKELPGYRPGDYLGTWEWVEQSDEGWDSYQTKELNNGRLAMVAIAGLIVQDLITG 189 + S +AF P + + + D ++G +AP FDPLG + KT+ YRE+ELK+GRVAM A LGW I HP + G LS +PLKA E+ +GW Q VIE+L KIKE PGY PGD LG WV+ SDEGW YQ KELNNGRLAM+A G++ QD++ G Sbjct: 10 LGSAAAFAPASQTKSSSTVLSAWKDDAVVGKTAPAGYFDPLGLSKNKSDKTMAYYREAELKNGRVAMAACLGWYITAGGTHPAFGGSLSDDPLKAAGELSFVGWLQFIFGCGVIEFLGEKIKERPGYVPGDILGASFWVDNSDEGWVMYQNKELNNGRLAMLAFVGILTQDILYG 184
BLAST of NO29G01730 vs. NCBI_GenBank
Match: GAX22109.1 (hypothetical protein FisN_6Hh357 [Fistulifera solaris]) HSP 1 Score: 169.1 bits (427), Expect = 1.500e-38 Identity = 84/175 (48.00%), Postives = 106/175 (60.57%), Query Frame = 0 Query: 15 MASVSAFVPPAPAAPRTRGVMKMGLDGMIGSSAPFKNFDPLGFAAKADQKTLNKYRESELKHGRVAMLAVLGW-IVQEFWHPLYDGKLSSNPLKALTEVPLIGWAQIFVAINVIEYLQNKIKELPGYRPGDYLGTWEWVEQSDEGWDSYQTKELNNGRLAMVAIAGLIVQDLITG 189 + S +AF P + + D ++G +AP FDPLG + KT+ YRE+ELK+GRVAM A LGW I HP + G LS +PLKA E+ +GW Q VIE+L KIKE PGY PGD LG WV+ SDEGW YQ KELNNGRLAM+A G++ QD++ G Sbjct: 10 LGSAAAFAPASQTKSSNTVLSAWKDDAVVGKTAPAGYFDPLGLSKNKSDKTMAYYREAELKNGRVAMAACLGWYITAGGTHPAFGGSLSDDPLKAAGELSFVGWLQFIFGCGVIEFLGEKIKERPGYVPGDILGASFWVDNSDEGWVMYQNKELNNGRLAMLAFVGILTQDILYG 184
BLAST of NO29G01730 vs. NCBI_GenBank
Match: EJK50038.1 (hypothetical protein THAOC_31030 [Thalassiosira oceanica]) HSP 1 Score: 168.7 bits (426), Expect = 1.900e-38 Identity = 85/172 (49.42%), Postives = 110/172 (63.95%), Query Frame = 0 Query: 19 SAFVPPAPAAPRTRGVMKMGLDGMIGSSAPFKNFDPLGFAAKADQKTLNKYRESELKHGRVAMLAVLGWIVQEFW-HPLYDGKLSSNPLKALTEVPLIGWAQIFVAINVIEYLQNKIKELPGYRPGDYLGTWEWVEQSDEGWDSYQTKELNNGRLAMVAIAGLIVQDLITGQ 190 +AF P + A T+ + D ++G + P FDPLG + D T+ YRE+ELKHGRVAM A LGW + HP ++ LS++PLKA E+P +GW Q + IE+L +IKE PGY PGD LG WV+ SDEGW YQ KE+NNGRLAMVAI G+I QD+ TG+ Sbjct: 432 AAFAPVSQKAQSTQ-LNAWIQDQVVGVTPPMGYFDPLGLSYGKDDATMMFYREAELKHGRVAMAACLGWYLDAAGVHPAFNSALSNDPLKAAVELPAVGWLQFVLGCGAIEWLGQQIKERPGYVPGDLLGASYWVDNSDEGWVDYQNKEINNGRLAMVAIMGIIYQDVSTGE 602
BLAST of NO29G01730 vs. NCBI_GenBank
Match: XP_002176735.1 (fucoxanthin chlorophyll a/c protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC51198.1 fucoxanthin chlorophyll a/c protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 162.9 bits (411), Expect = 1.100e-36 Identity = 78/173 (45.09%), Postives = 109/173 (63.01%), Query Frame = 0 Query: 15 MASVSAFVPPAPAAPRTRGVMKMGLDGMIGSSAPFKNFDPLGFAAKADQKTLNKYRESELKHGRVAMLAVLGW-IVQEFWHPLYDGKLSSNPLKALTEVPLIGWAQIFVAINVIEYLQNKIKELPGYRPGDYLGTWEWVEQSDEGWDSYQTKELNNGRLAMVAIAGLIVQDLI 187 + S +AF P + + + + ++G +AP FDPLG + + +T+ YRESELKHGRVAM A LGW I HP ++ +LSS+PL+A ++P + W Q + +E+L +IK+ PGY PGD LG W + SDEGW YQ KELNNGRLAM+AIAG+ QD++ Sbjct: 10 VGSAAAFAPASQIHRGSSSLSAWKDETVVGITAPVGFFDPLGLSKDKNDETMGYYRESELKHGRVAMAACLGWFITAGGTHPAFNSELSSDPLEAARQLPFVAWLQFILGCGAVEWLTEQIKKRPGYVPGDVLGASYWADNSDEGWVDYQNKELNNGRLAMLAIAGIYAQDIL 182
BLAST of NO29G01730 vs. NCBI_GenBank
Match: KOO28757.1 (protein fucoxanthin chlorophyll a c protein [Chrysochromulina sp. CCMP291]) HSP 1 Score: 159.5 bits (402), Expect = 1.200e-35 Identity = 89/200 (44.50%), Postives = 117/200 (58.50%), Query Frame = 0 Query: 9 LVAAVTMASVSAFVPPAPAAPRTRG-VMKMGLDGMIGSSAPFKNFDPLGFAAKADQKTLNKYRESELKHGRVAMLAVLGWIVQE--FWHPLYDGKLSSNPLKALTEVPLIGWAQIFVAINVIEYLQNKIKELPGYRPGDYLGTWEWVEQ--SDEGWDSYQTKELNNGRLAMVAIAGLIVQDLITGQAALEQITAGNTGVF 204 + ++ + S + F P AA + ++ M + GM+G AP FDPLGF+ A + + YRE+ELKHGRVAM+A G I + P K SSNPL+ALT+ P +GW QI I IE L P Y PG++LGT +W + +D GWDSYQTKELNNGRLAM G++ ITG+ LE +T G T VF Sbjct: 1 MALSLAVLSSTGFAAPMGAATGSAAPLISMKMKGMVGDGAPLGFFDPLGFSKDATPEKMKMYREAELKHGRVAMIACFGMITADSTSLFPRVFEKFSSNPLEALTQCPKLGWLQILTFIMFIEVLGIINSRRPDYEPGNFLGTSQWGLEAGNDFGWDSYQTKELNNGRLAMFGAIGMLAGSYITGKGPLEVMTGGGTVVF 200
BLAST of NO29G01730 vs. NCBI_GenBank
Match: CEM26548.1 (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 157.5 bits (397), Expect = 4.400e-35 Identity = 84/175 (48.00%), Postives = 105/175 (60.00%), Query Frame = 0 Query: 42 MIGSSAPFKNFDPLGFAAKADQKTLNKYRESELKHGRVAMLAVLGWIVQEFWHPLYDGKLSSNPLKALTEVPLIGWAQIFVAINVIEYLQNKI-----KELPGYR--PGDYLGTWEWVEQ--------------------SDEGWDSYQTKELNNGRLAMVAIAGLIVQDLITGQ 190 +IGSSAP FDPLGF + + + RE ELKHGR+AM AVLGW+ Q +HPLY GKLS++PLKA+TEVP G Q+ I EY+ + +E PG PGDYLGT+ W + + E W YQT+ELNNGRLAM+AI GLIVQD++ GQ Sbjct: 99 LIGSSAPLGFFDPLGFTKNKSTQEIARLRECELKHGRLAMFAVLGWMTQTVFHPLYGGKLSADPLKAITEVPAPGIIQLLFFIGFFEYVTMNLVKKYQRETPGRMDLPGDYLGTYGWYQDIVSTRRADGIDDFPVTDSGVTPEQWVGYQTRELNNGRLAMMAIVGLIVQDVLFGQ 273
BLAST of NO29G01730 vs. NCBI_GenBank
Match: ABA55527.1 (chloroplast light harvesting protein isoform 11 [Isochrysis galbana]) HSP 1 Score: 157.1 bits (396), Expect = 5.800e-35 Identity = 86/196 (43.88%), Postives = 123/196 (62.76%), Query Frame = 0 Query: 9 LVAAVTMASVSAFVPPAP-AAPRTRGVMKMGLDGMIGSSAPFKNFDPLGFAAKADQKTLNKYRESELKHGRVAMLAVLGWIVQEFWHPLYDGKLSSNPLKALTEVPLIGWAQIFVAINVIEYLQNKIKELPGYRPGDYLGTWEWVEQSDEGWDSYQTKELNNGRLAMVAIAGLIVQDLITGQAALEQITAGNTGVF 204 L A +A V+ + AP P +G+ + + GM+G SAP FDP GF+ +A ++ K+RE+ELKHGRVAMLA G I + +HPLYDGKLSSNPL A+++VP +G QI + I +E P Y+PG++LG+ +W ++ WD +Q +ELNNGRLAM A G++ ITG+ LE + G++ VF Sbjct: 5 LAATSPLALVNNGMVRAPMQQPACQGI-QAKIKGMVGDSAPLGFFDPFGFSKEASPASMAKFREAELKHGRVAMLASAGMITADKFHPLYDGKLSSNPLLAISQVPKLGLLQIVLFIGFMEVFGILNSRRPDYQPGNFLGSAQW--ETGASWDDFQVRELNNGRLAMFASIGMLTHSSITGKGPLE-LLDGSSSVF 196
BLAST of NO29G01730 vs. NCBI_GenBank
Match: CBJ28127.1 (Light harvesting complex protein [Ectocarpus siliculosus]) HSP 1 Score: 155.6 bits (392), Expect = 1.700e-34 Identity = 83/159 (52.20%), Postives = 110/159 (69.18%), Query Frame = 0 Query: 52 FDPLGFAAKADQKTLNKYRESELKHGRVAMLAVLGWIVQEFWHPLYDGKLSSNPLKALTEVPLIGWAQIFVAINVIEYLQNKIKELPGYRPGDYLGTWEWVEQSDEG----WDSYQTKELNNGRLAMVAIAGLIVQDLIT-GQAALEQITAGNTGVFSG 206 FD +GF +K + LN YRE+ELKHGR AMLAV+G++ QE WHPLY+G LSSNP+KA+TEVP G QI + I +EY+ ++I PGY PGDY+G + S+EG W++YQ KEL+NGR AM+ I GL+ + +T G A EQI + GV+SG Sbjct: 57 FDXMGF-SKGPAERLNAYREAELKHGRTAMLAVVGFLTQENWHPLYNGGLSSNPVKAITEVPPEGLFQIVMFIGFLEYVISQIVAKPGYIPGDYVGANDLF--SEEGPHSQWETYQLKELHNGRAAMMGITGLVTHNFLTGGMPAFEQI---SRGVYSG 209 The following BLAST results are available for this feature:
BLAST of NO29G01730 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20 Position : 0 Zoom : x 1
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO29G01730 ID=NO29G01730|Name=NO29G01730|organism=Nannochloropsis oceanica|type=gene|length=3524bpback to top protein sequence of NO29G01730.1 >NO29G01730.1-protein ID=NO29G01730.1-protein|Name=NO29G01730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=209bpback to top Synonyms
Publications
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