NO29G01730.1, NO29G01730.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO29G01730.1
Unique NameNO29G01730.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2423
Alignment locationchr29:547909..551432 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr29genomechr29:547909..551432 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO29G01730.1 vs.
Match: CBJ28127.1 (Light harvesting complex protein [Ectocarpus siliculosus])

HSP 1 Score: 177.2 bits (448), Expect = 5.400e-41
Identity = 100/214 (46.73%), Postives = 136/214 (63.55%), Query Frame = 0 
Query:    6 KTLLVAAVTMASVSAFVPPAP---------AAPRTRGVMKMGLDGMIGSSAPFKNFDPLGFAAKADQKTLNKYRESELKHGRVAMLAVLGWIVQEFWHPLYDGKLSSNPLKALTEVPLIGWAQIFVAINVIEYLQNKIKELPGYRPGDYLGTWEWVEQSDEG----WDSYQTKELNNGRLAMVAIAGLIVQDLIT-GQAALEQITAGNTGVFSG 206
            K+++  +  +AS SAFVP A            P +   + M    M+G+SAP   FDP+GF+ K   + LN YRE+ELKHGR AMLAV+G++ QE WHPLY+G LSSNP+KA+TEVP  G  QI + I  +EY+ ++I   PGY PGDY+G  +    S+EG    W++YQ KEL+NGR AM+ I GL+  + +T G  A EQI   + GV+SG
Sbjct:    2 KSVIAFSAVLASASAFVPSASFVGSPVSSVTRPASSTAVSMAASDMVGASAPLGFFDPMGFS-KGPAERLNAYREAELKHGRTAMLAVVGFLTQENWHPLYNGGLSSNPVKAITEVPPEGLFQIVMFIGFLEYVISQIVAKPGYIPGDYVGANDLF--SEEGPHSQWETYQLKELHNGRAAMMGITGLVTHNFLTGGMPAFEQI---SRGVYSG 209
The following BLAST results are available for this feature:
BLAST of NO29G01730.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
20040060080010001200140016001800200022002400SequenceCBJ28127.1
Match NameE-valueIdentityDescription
CBJ28127.15.400e-4146.73Light harvesting complex protein [Ectocarpus silic... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO29G01730NO29G01730Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO29G01730.1NO29G01730.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO29G01730.1.cds1NO29G01730.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO29G01730.1.cds2NO29G01730.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO29G01730.1.cds3NO29G01730.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO29G01730.1.cds4NO29G01730.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO29G01730.1.cds5NO29G01730.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO29G01730.1.cds6NO29G01730.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO29G01730.1.cds7NO29G01730.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO29G01730.1.cds8NO29G01730.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO29G01730.1 ID=NO29G01730.1|Name=NO29G01730.1|organism=Nannochloropsis oceanica|type=mRNA|length=2423bp
TCTTGTTCCCTCTCTGATTGCTGATGTCGACGCTTGCTCCCACCCATGTT
TTCAACGCAAAGGATGCTTAATGAACCCTCCATCGTATCGATCTAGCACG
ATATACTTGTAAACACACATCCTACATCTCTGTTGGCTCGGCTTGTCTAA
TCCGTGGGAGCTTTTCATGGTGCATGTCGAAGCTGGGCGACACTGCACCG
CACAAGGCATCGCACCCCCATATTCCGGGAGCTTAGCTCTTATGCACTGA
GATATCTATAGGCTTATAAGGCTCTGATACACGTATACCCGCCCTTGACC
ATGATGAAAGGGCACACAAAGAGTTATTACCTGCTGTGTCGACCTCCTCC
CTCCTCCGCCTCCTCGATCACAAAAAAAAACGCACTTCTGATTGCCTGGT
AAACCACAATCCACCTACTCTTTTGCAATGCCACATTCCTTTTTATCCCA
CCAGCGCTTAATGATGGGGCCCCTTGCCTTGGCTGGGCAATCCAGCTAGC
ACATCGACGGCCCATGGTCGGACAAACCCAGCTCCTGTGCCTCCTTCAGT
TCAAGTCCCCGAATCCACCCCTTCAACAACGTGACACACACACCCTTCAT
CGAGTAGGTGTGGATGGCTCTCCACTTGCCCCCATGCCTTAGCCTGTGCC
CTTCTACCCGCGGTCTTGCGTGCACGCTCACAAACCTGGGCCTTGCCTAG
CATCGTCAGCAACAACAGTGCATCTATGTATTGGCGAGCTGTAATTTCCT
GGACAATGGCCGCAACATTACGCAGCCACTCGCCTTCCCGTTCCGCGCCG
CGCGCCCGTCCTCGCCCTTTCCCTTCCTCCGCCTTCGTTTTTAGATACAT
TCAAGTACCCCAACTTGAGGCCCGGCCGGCTTGAGGAGAGAGAGAGGAGG
GAAGGAGGGGCAGGACGTAACACCACTTTGATTGAACATAGAAACCTCTT
GTACTCACTTTCTCTCACACCACACAATTTATTTGGATGCTCACACCCAC
ACGGTTCAACGACGGGTTGTTGGTGAGCCACTTGCGCTCATTGCCTTGCC
CTCTCTCTCTTCTTCACGTACACACAACGCATGCATCCACGACCCCCACA
GAGGCACCGTAGCATGAGTACAGCAGTAAAGACGAGATTGCTGTGGTGAT
GGTTCCCTTGCTTGACTTTTTGGCTGCTAGACTTCCAAGAGAAGTCGGAC
ACGGTCGGCTTGCCCTCACGTGCCTTGCCCTCCCTCCCTCCCTTTCGAAC
CCGAGCCTTTGGCCCGCCCATGAGCAATGGAGAGGGATGGATGCGGGTAG
ACTACTCGAGAGCAGCAGCAGTACAACCACCAAGACGATGCGTGATGGCT
AACCCACGCTTTCCTCCTTTCCCTCCCTCCCCTCCCACCCGGCACACAAC
AATACAGCCTCTTCCTCGCCAATCTCCCCCTTTCATCCTCTTTCCCTCAG
TAAGCAATCATGGTCGGCATCCACAAGACGCTTCTCGTGGCTGCGGTAAC
GATGGCCAGTGTCAGTGCCTTTGTGCCCCCAGCGCCCGCTGCTCCCCGCA
CCCGCGGCGTGATGAAAATGGGCTTGGACGGCATGATCGGCTCTTCGGCC
CCCTTCAAGAATTTCGATCCTCTCGGCTTTGCCGCCAAGGCCGACCAGAA
GACGCTCAACAAGTACCGTGAGTCGGAGCTCAAGCACGGCCGCGTGGCCA
TGCTGGCGGTGCTCGGATGGATCGTGCAGGAGTTCTGGCACCCGCTCTAC
GACGGCAAGCTCTCCTCCAATCCCCTCAAGGCCCTGACGGAGGTGCCGCT
CATCGGGTGGGCGCAGATCTTCGTGGCCATCAACGTCATCGAATACCTCC
AGAACAAGATCAAGGAGCTCCCGGGATACCGTCCTGGCGACTATCTTGGC
ACGTGGGAGTGGGTCGAACAGTCCGATGAGGGCTGGGATAGCTACCAGAC
GAAGGAGCTCAACAACGGTCGTTTGGCCATGGTCGCCATCGCCGGCCTCA
TCGTCCAGGACTTGATTACGGGCCAGGCCGCGCTGGAGCAGATTACGGCG
GGGAACACGGGCGTCTTTTCGGGCCTCGGGAAGTAAGAAGAAGGAAACGA
TGATGAATGAATAGGAAGGAGGAAAGGAGGGCGGGAGGGAGGGAGGAGTG
TGGTGATGATTCCCCGGCCTTAAGGACTCTCTTGTTGGCTTTGGAGTACA
AGAGTGAAGGAAGGATGGAGGGAGGGAGGACACCTCCAAAGAGGGGGAGA
TGATAGAAGGAAGGTGAAGGGGGAGAAGAACAACAAGAGCGATCAAGAAG
AGATAGCGGCAACGCCGAAAGAAGCAACGATGGAGATTTTACTCTGTAGT
AGTAGCAACAGCAGCTGCAGCAGCAGTGAGAGGTGAGGTGCGAGATGAGA
TATGAGAGATGAGTGATGAGGAA
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protein sequence of NO29G01730.1

>NO29G01730.1-protein ID=NO29G01730.1-protein|Name=NO29G01730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=209bp
MVGIHKTLLVAAVTMASVSAFVPPAPAAPRTRGVMKMGLDGMIGSSAPFK
NFDPLGFAAKADQKTLNKYRESELKHGRVAMLAVLGWIVQEFWHPLYDGK
LSSNPLKALTEVPLIGWAQIFVAINVIEYLQNKIKELPGYRPGDYLGTWE
WVEQSDEGWDSYQTKELNNGRLAMVAIAGLIVQDLITGQAALEQITAGNT
GVFSGLGK*
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mRNA from alignment at chr29:547909..551432-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO29G01730.1 ID=NO29G01730.1|Name=NO29G01730.1|organism=Nannochloropsis oceanica|type=mRNA|length=3524bp|location=Sequence derived from alignment at chr29:547909..551432- (Nannochloropsis oceanica)
TCTTGTTCCCTCTCTGATTGCTGATGTCGACGCTTGCTCCCACCCATGTT
TTCAACGCAAAGGATGCTTAATGAACCCTCCATCGTATCGATCTAGCACG
ATATACTTGTAAACACACATCCTACATCTCTGTTGGCTCGGCTTGTCTAA
TCCGTGGGAGCTTTTCATGGTGCATGTCGAAGCTGGGCGACACTGCACCG
CACAAGGCATCGCACCCCCATATTCCGGGAGCTTAGCTCTTATGCACTGA
GATATCTATAGGCTTATAAGGCTCTGATACACGTATACCCGCCCTTGACC
ATGATGAAAGGGCACACAAAGAGTTATTACCTGCTGTGTCGACCTCCTCC
CTCCTCCGCCTCCTCGATCACAAAAAAAAACGCACTTCTGATTGCCTGGT
AAACCACAATCCACCTACTCTTTTGCAATGCCACATTCCTTTTTATCCCA
CCAGCGCTTAATGATGGGGCCCCTTGCCTTGGCTGGGCAATCCAGCTAGC
ACATCGACGGCCCATGGTCGGACAAACCCAGCTCCTGTGCCTCCTTCAGT
TCAAGTCCCCGAATCCACCCCTTCAACAACGTGACACACACACCCTTCAT
CGAGTAGGTGTGGATGGCTCTCCACTTGCCCCCATGCCTTAGCCTGTGCC
CTTCTACCCGCGGTCTTGCGTGCACGCTCACAAACCTGGGCCTTGCCTAG
CATCGTCAGCAACAACAGTGCATCTATGTATTGGCGAGCTGTAATTTCCT
GGACAATGGCCGCAACATTACGCAGCCACTCGCCTTCCCGTTCCGCGCCG
CGCGCCCGTCCTCGCCCTTTCCCTTCCTCCGCCTTCGTTTTTAGATACAT
TCAAGTACCCCAACTTGAGGCCCGGCCGGCTTGAGGAGAGAGAGAGGAGG
GAAGGAGGGGCAGGACGTAACACCACTTTGATTGAACATAGAAACCTCTT
GTACTCACTTTCTCTCACACCACACAATTTATTTGGATGCTCACACCCAC
ACGGTTCAACGACGGGTTGTTGGTGAGCCACTTGCGCTCATTGCCTTGCC
CTCTCTCTCTTCTTCACGTACACACAACGCATGCATCCACGACCCCCACA
GAGGCACCGTAGCATGAGTACAGCAGTAAAGACGAGATTGCTGTGGTGAT
GGTTCCCTTGCTTGACTTTTTGGCTGCTAGACTTCCAAGAGAAGTCGGAC
ACGGTCGGCTTGCCCTCACGTGCCTTGCCCTCCCTCCCTCCCTTTCGAAC
CCGAGCCTTTGGCCCGCCCATGAGCAATGGAGAGGGATGGATGCGGGTAG
ACTACTCGAGAGCAGCAGCAGTACAACCACCAAGACGATGCGTGATGGCT
AACCCACGCTTTCCTCCTTTCCCTCCCTCCCCTCCCACCCGGCACACAAC
AATACAGCCTCTTCCTCGCCAATCTCCCCCTTTCATCCTCTTTCCCTCAG
TAAGCAATCATGGTCGGCATCCACAAGACGCTTCTCGTGGCTGCGGTAAC
GATGGCCAGGTATGCCTTCAATTTATCCCTCCTTCCTGCCCTCCTTCTCG
CCCTCCTTCGTCCCGCTGAAGCGAGCGCCAGGATGACAAGAAGAATCAAT
GCGTGCTTCCACTCATCCCATTTTCCTTACTTCCCTTCCTCCCTCCGTCC
TCCTTAGTGTCAGTGCCTTTGTGCCCCCAGCGCCCGCTGCTCCCCGCACC
CGCGGCGTGATGAAAATGGGCTTGGTAGGTTAGAATGAAAGGGAAGGAGG
GAAGAAGGGAGCGAAGGAGGAAGAGGGAAGGCTCAAGTAAAGCTGAGGAG
AATGCAAATTTAGAATGAAGACGACTGAGAAAGGGAGGGAGAGGAAACGA
GGGAGGATTGGAAGGTGACTTTCAAGATGCCGTTTGTGTCGTCCACCAGC
CGCCTGACCACCCCCTCCCCCCCTCCCTCCCTCAGGACGGCATGATCGGC
TCTTCGGCCCCCTTCAAGAATTTCGATCCTCTCGGCTTTGCCGCCAAGGC
CGACCAGAAGACGCTCAACAAGTACCGTGAGTCGGAGCTCAAGCACGGTA
CGTCCCTCCCTCCTTCCCTCCCTCCTTCCCTCCCTCCCACTCCACTCACC
CTCCCGCTCCCCCTCTCTCTTCGCGTCGACTCCACTTACCCACACTCCCT
CCTTCCTTTCCTCCCTCCCTCCCTCCCTCCCCAGGCCGCGTGGCCATGCT
GGCGGTGCTCGGATGGATCGTGCAGGAGTTCTGGCACCCGCTCTACGACG
GCAAGCTCTCCTCCAATCCCCTCAAGGTATCAATGTGCCCTGGCCTGCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCTCTCCTTCCCTTTTCCTCCCTACC
ATTTCTCCTCGAACCTCCTGACAGTGCATGGCCTTCCCTCCCTCCCTCCC
TCCCTCCCTCCCCCTCCTTTCCTGTTCTTCCCTCCTCCCTGACCACTCCC
TCCCTCCCTCCCTCCCTCCCTACCCCAGGCCCTGACGGAGGTGCCGCTCA
TCGGGTGGGCGCAGATCTTCGTGGCCATCAACGTCATCGAATACCTCCAG
AACAAGATCAAGGAGCTCCCGGGGTACGTCCCTTCCTCCCTCCCTCCCTC
CCTCCCTCCTTCCTTCCTTCCTTCCTTCCCGTGGGTTTATGGACTTACCG
TGCCCGGATATTGATGGTGTTCCCTTCCTCCCTCCCTCCCTTGAGCTCCA
TTGAAACCTCACCCTCCCTCCCTCCCTCCCTCCCTCTCTCCCTCCCTTCC
TCCCTCAGATACCGTCCTGGCGACTATCTTGGCACGTGGGAGTGGGTCGA
ACAGTCCGATGAGGGCTGGGATAGCTACCAGGTGGGGAGGGAGGGAGGGA
GGGAGGGAGGGAGGGAGGGAGGGGATGCCATCACTCCATATTTTCAGATC
GATTTACTCACCCCTCCTTCCTCCTCCCTTCCTTCCTTCCCCTCTAGACG
AAGGAGCTCAACAACGGTCGTTTGGCCATGGTCGCCATCGCCGGCCTCAT
CGTCCAGGTGCGCCCTGCCTCCTTCCCTCCCTCCCTCCCTCCCTCCTTAT
CCTGTCCTTTGTCCCACTCCCCCCTCACTCTACACCTCCCTCCCTCTCTC
TCTCGCTAGGACTTGATTACGGGCCAGGCCGCGCTGGAGCAGATTACGGC
GGGGAACACGGGCGTCTTTTCGGGCCTCGGGAAGTAAGAAGAAGGAAACG
ATGATGAATGAATAGGAAGGAGGAAAGGAGGGCGGGAGGGAGGGAGGAGT
GTGGTGATGATTCCCCGGCCTTAAGGACTCTCTTGTTGGCTTTGGAGTAC
AAGAGTGAAGGAAGGATGGAGGGAGGGAGGACACCTCCAAAGAGGGGGAG
ATGATAGAAGGAAGGTGAAGGGGGAGAAGAACAACAAGAGCGATCAAGAA
GAGATAGCGGCAACGCCGAAAGAAGCAACGATGGAGATTTTACTCTGTAG
TAGTAGCAACAGCAGCTGCAGCAGCAGTGAGAGGTGAGGTGCGAGATGAG
ATATGAGAGATGAGTGATGAGGAA
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Coding sequence (CDS) from alignment at chr29:547909..551432-

>NO29G01730.1 ID=NO29G01730.1|Name=NO29G01730.1|organism=Nannochloropsis oceanica|type=CDS|length=627bp|location=Sequence derived from alignment at chr29:547909..551432- (Nannochloropsis oceanica)
ATGGTCGGCATCCACAAGACGCTTCTCGTGGCTGCGGTAACGATGGCCAG
TGTCAGTGCCTTTGTGCCCCCAGCGCCCGCTGCTCCCCGCACCCGCGGCG
TGATGAAAATGGGCTTGGACGGCATGATCGGCTCTTCGGCCCCCTTCAAG
AATTTCGATCCTCTCGGCTTTGCCGCCAAGGCCGACCAGAAGACGCTCAA
CAAGTACCGTGAGTCGGAGCTCAAGCACGGCCGCGTGGCCATGCTGGCGG
TGCTCGGATGGATCGTGCAGGAGTTCTGGCACCCGCTCTACGACGGCAAG
CTCTCCTCCAATCCCCTCAAGGCCCTGACGGAGGTGCCGCTCATCGGGTG
GGCGCAGATCTTCGTGGCCATCAACGTCATCGAATACCTCCAGAACAAGA
TCAAGGAGCTCCCGGGATACCGTCCTGGCGACTATCTTGGCACGTGGGAG
TGGGTCGAACAGTCCGATGAGGGCTGGGATAGCTACCAGACGAAGGAGCT
CAACAACGGTCGTTTGGCCATGGTCGCCATCGCCGGCCTCATCGTCCAGG
ACTTGATTACGGGCCAGGCCGCGCTGGAGCAGATTACGGCGGGGAACACG
GGCGTCTTTTCGGGCCTCGGGAAGTAA
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Synonyms
Publications