NO29G01710, NO29G01710 (gene) Nannochloropsis oceanica

Overview
NameNO29G01710
Unique NameNO29G01710
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1429
Alignment locationchr29:539441..540869 +

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Properties
Property NameValue
DescriptionEF-Hand 1, calcium-binding site
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr29genomechr29:539441..540869 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO:0005215transporter activity
Vocabulary: INTERPRO
TermDefinition
IPR011992EF-hand-dom_pair
IPR0130992pore_dom_K_chnl_dom
IPR002048EF_hand_dom
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
Homology
BLAST of NO29G01710 vs. NCBI_GenBank
Match: EWM20296.1 (EF-Hand 1, calcium-binding site [Nannochloropsis gaditana])

HSP 1 Score: 276.2 bits (705), Expect = 8.500e-71
Identity = 136/174 (78.16%), Postives = 159/174 (91.38%), Query Frame = 0
Query:    1 MVIRALVPVILVNAIGAGSIGYLENWTQIDVVYYAVITATTIGYGDLHPDNDLAYVLASIYIPFAVFAVGNFVSTMAEYYMHQSEERRRAELLTRKYEFEELLAMDENNDGSVDIMEFTIYLLKLWGMVDDGILDAINARFRELDTDGSGQLTKEDFIEAVAEPERKAMLREMT 175
            +V+RAL+PVILVNAIGAG+IGYLE WT+ID+VYYAVI++TTIGYGDLHPDN+  Y++ASIYIPFAV AVGNFV+T+A+YYM +SEE+RRAE+L RKY FEELLAMDENNDGSVDIMEFTIYLLKLWGMVDD IL+AI ARF ELDTD +G LTK +FIEAVAEPER +MLR ++
Sbjct:  280 LVLRALLPVILVNAIGAGTIGYLEGWTEIDIVYYAVISSTTIGYGDLHPDNEATYLVASIYIPFAVVAVGNFVTTIAQYYMGKSEEKRRAEILNRKYAFEELLAMDENNDGSVDIMEFTIYLLKLWGMVDDKILEAIYARFHELDTDNTGLLTKANFIEAVAEPERLSMLRALS 453          
BLAST of NO29G01710 vs. NCBI_GenBank
Match: XP_005854952.1 (hypothetical protein NGA_0381200, partial [Nannochloropsis gaditana CCMP526] >EKU21404.1 hypothetical protein NGA_0381200, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 221.5 bits (563), Expect = 2.500e-54
Identity = 107/131 (81.68%), Postives = 122/131 (93.13%), Query Frame = 0
Query:   10 ILVNAIGAGSIGYLENWTQIDVVYYAVITATTIGYGDLHPDNDLAYVLASIYIPFAVFAVGNFVSTMAEYYMHQSEERRRAELLTRKYEFEELLAMDENNDGSVDIMEFTIYLLKLWGMVDDGILDAINAR 141
            ILVNAIGAG+IGYLE WT+ID+VYYAVI++TTIGYGDLHPDN+  Y++ASIYIPFAV AVGNFV+T+A+YYM +SEE+RRAE+L RKY FEELLAMDENNDGSVDIMEFTIYLLKLWGMVDD IL+AI AR
Sbjct:    1 ILVNAIGAGTIGYLEGWTEIDIVYYAVISSTTIGYGDLHPDNEATYLVASIYIPFAVVAVGNFVTTIAQYYMGKSEEKRRAEILNRKYAFEELLAMDENNDGSVDIMEFTIYLLKLWGMVDDKILEAIYAR 131          
BLAST of NO29G01710 vs. NCBI_GenBank
Match: XP_005854953.1 (hypothetical protein NGA_0381300 [Nannochloropsis gaditana CCMP526] >EKU21405.1 hypothetical protein NGA_0381300 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 146.7 bits (369), Expect = 7.800e-32
Identity = 70/83 (84.34%), Postives = 77/83 (92.77%), Query Frame = 0
Query:   44 YGDLHPDNDLAYVLASIYIPFAVFAVGNFVSTMAEYYMHQSEERRRAELLTRKYEFEELLAMDENNDGSVDIMEFTIYLLKLW 127
            Y DLHPDN+ AY++ASIYIPFAVFAVGNFVST+AEYYM +SE +RRAE+L RKY FEELLAMDENNDGSVDIMEFTIYLLKLW
Sbjct:    6 YSDLHPDNNAAYLVASIYIPFAVFAVGNFVSTVAEYYMQKSERKRRAEILNRKYAFEELLAMDENNDGSVDIMEFTIYLLKLW 88          
BLAST of NO29G01710 vs. NCBI_GenBank
Match: EWM20297.1 (EF-Hand 1, calcium-binding site [Nannochloropsis gaditana])

HSP 1 Score: 134.8 bits (338), Expect = 3.100e-28
Identity = 62/81 (76.54%), Postives = 77/81 (95.06%), Query Frame = 0
Query:    1 MVIRALVPVILVNAIGAGSIGYLENWTQIDVVYYAVITATTIGYGDLHPDNDLAYVLASIYIPFAVFAVGNFVSTMAEYYM 82
            +V+RAL+PVILVNAIGAG+IGYLE WT+ID+VYYAVI++TTIGYGDLHPDN+  Y++ASIYIPFAV AVGNFV+T+A+YY+
Sbjct:  280 LVLRALLPVILVNAIGAGTIGYLEGWTEIDIVYYAVISSTTIGYGDLHPDNEATYLVASIYIPFAVVAVGNFVTTIAQYYV 360          
BLAST of NO29G01710 vs. NCBI_GenBank
Match: GAX98744.1 (Hypothetical protein PINS_006629 [Pythium insidiosum])

HSP 1 Score: 108.6 bits (270), Expect = 2.300e-20
Identity = 64/166 (38.55%), Postives = 96/166 (57.83%), Query Frame = 0
Query:    2 VIRALVPVILVNAIGAGSI-GYLENWTQIDVVYYAVITATTIGYGDLHPDNDLAYVLASIYIPFAVFAVGNFVSTMAE-----YYMHQSEER-----RRAELLTRKYEFEELLAMDENNDGSVDIMEFTIYLLKLWGMVDDGILDAINARFRELDTDGSGQLTKED 157
            +  +LVP+ +  +IG G I G +E W  +D  YYA+IT TT+G+GDL P ++ A + A  Y+P +V +V + + +  E       M  ++E+       A LL +K   +ELLAMD + DG V  +E+  Y+L   G  D   +D I A+F +LD DGSG+L KED
Sbjct:  191 IAASLVPIFV--SIGCGLIVGAIEGWPVLDCFYYAIITVTTVGFGDLSPKSEAARIYAIFYLPLSVVSVAHAIGSXIEEIGRRRVMKSTKEKFTRSHESATLLLQKISMKELLAMDSDGDGKVSKLEYLSYMLVKLGKADQDDIDGILAQFGKLDKDGSGELDKED 354          
BLAST of NO29G01710 vs. NCBI_GenBank
Match: GAY01894.1 (Hypothetical protein PINS_009721 [Pythium insidiosum])

HSP 1 Score: 107.8 bits (268), Expect = 4.000e-20
Identity = 60/156 (38.46%), Postives = 92/156 (58.97%), Query Frame = 0
Query:    2 VIRALVPVILVNAIGAGSI-GYLENWTQIDVVYYAVITATTIGYGDLHPDNDLAYVLASIYIPFAVFAVGNFVSTMAEYYMHQSEERRRAELLTRKYEFEELLAMDENNDGSVDIMEFTIYLLKLWGMVDDGILDAINARFRELDTDGSGQLTKED 157
            +  +LVP+ +  +IG G I G +E W  +D  YYA+IT TT+G+GDL P ++ A + A  Y+P +V +V + + ++        EE  R  ++  K   +ELLAM+ + DG V  +E+  Y+L   G  D   +D I A+F +LD DGSG+L KED
Sbjct:  191 IAASLVPIFV--SIGCGLIVGAIEGWPVLDCFYYAIITVTTVGFGDLSPKSEAARIYAIFYLPLSVVSVAHAIGSII-------EEIGRRRVMKSKISMKELLAMESDGDGKVSKLEYLSYMLVKLGKADQDDIDGILAQFGKLDKDGSGELDKED 337          
BLAST of NO29G01710 vs. NCBI_GenBank
Match: CCI49226.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 101.3 bits (251), Expect = 3.700e-18
Identity = 55/155 (35.48%), Postives = 87/155 (56.13%), Query Frame = 0
Query:    2 VIRALVPVILVNAIGAGSIGYLENWTQIDVVYYAVITATTIGYGDLHPDNDLAYVLASIYIPFAVFAVGNFVSTMAEYYMHQSEERRRAELLTRKYEFEELLAMDENNDGSVDIMEFTIYLLKLWGMVDDGILDAINARFRELDTDGSGQLTKED 157
            ++ AL P I+ + +G   +G +E W  +D +YY  +T TT+G+GD  P ++   V A  Y+PF+V AV + +  +        EE  R  ++ ++   +ELLAMD + DG V  +E+  Y+L     V+   +D I  +FR+LD DGSG L K D
Sbjct:  238 MVCALTPFIM-SIVGGVVLGQMEGWPILDCLYYTTVTITTVGFGDYSPKSNGGRVFAIFYLPFSVIAVAHGIGAVI-------EEINRRAVMKKRISMKELLAMDADGDGQVSKLEYLSYMLVKMNKVEQDDIDRILTQFRKLDRDGSGVLDKND 384          
BLAST of NO29G01710 vs. NCBI_GenBank
Match: GAX21292.1 (potassium channel subfamily K member 16 [Fistulifera solaris])

HSP 1 Score: 100.9 bits (250), Expect = 4.900e-18
Identity = 49/156 (31.41%), Postives = 80/156 (51.28%), Query Frame = 0
Query:    8 PVILVNAIGAGSIGYLENWTQIDVVYYAVITATTIGYGDLHPDNDLAYVLASIYIPFAVFAVGNFVSTMAEYYMHQSEERRRAELLTRKYEFEELLAMDENNDGSVDIMEFTIYLLKLWGMVDDGILDAINARFRELDTDGSGQLTKEDFIEAVAE 164
            P++    +G   +G+ E W   + +Y+ V   TTIG+GD HPD+ L  +    ++P  V  +G F++ +A  YM +   +   + LTR     ++ AMDENNDG V   EF  ++L     V+   +  I + F  LD   SG +  +D + + AE
Sbjct:  202 PILFFVLMGGVMLGHAEGWNMFESIYFTVTAGTTIGFGDYHPDHPLVRLACCFFLPLLVAVLGQFLAAVASVYMKRQRRQAERKFLTRTMTIYDMQAMDENNDGEVQESEFLAFMLVALNKVNKDEITEIMSLFDRLDVSKSGTIDMKDLVVSKAE 357          
BLAST of NO29G01710 vs. NCBI_GenBank
Match: XP_008910304.1 (hypothetical protein PPTG_15051 [Phytophthora parasitica INRA-310] >ETI39848.1 hypothetical protein F443_14613 [Phytophthora parasitica P1569] >ETL33370.1 hypothetical protein L916_14150 [Phytophthora parasitica] >ETL86681.1 hypothetical protein L917_13933 [Phytophthora parasitica] >ETM39853.1 hypothetical protein L914_14058 [Phytophthora parasitica] >ETN04377.1 hypothetical protein PPTG_15051 [Phytophthora parasitica INRA-310] >ETO68574.1 hypothetical protein F444_14626 [Phytophthora parasitica P1976] >ETP09693.1 hypothetical protein F441_14483 [Phytophthora parasitica CJ01A1] >ETP37864.1 hypothetical protein F442_14440 [Phytophthora parasitica P10297])

HSP 1 Score: 100.1 bits (248), Expect = 8.300e-18
Identity = 60/167 (35.93%), Postives = 91/167 (54.49%), Query Frame = 0
Query:    2 VIRALVPVILVNAIGAGSI-GYLENWTQIDVVYYAVITATTIGYGDLHPDNDLAYVLASIYIPFAVFAVGNFVSTMAEYYMHQSEERRRAELLTRKYEFEELLAMDENNDGSVDIMEFTIYLLKLWGMVDDGILDAINARFRELDTDGSGQLTKEDFIEAVAEPERK 168
            +  A VP+++  +I AG I G +E W  +D  YY +IT TTIG+GDL P ++ A + A  Y+P AV  V + + ++         E     ++  K   +ELL MD + DG V  +E+  Y+L     VD   LD I A+F +LD DGSG+L ++D      E +R+
Sbjct:  237 IFHAFVPIVI--SIMAGLIVGAIEGWPVLDCFYYTLITITTIGFGDLSPKSESARIFAIFYLPLAVVTVAHGIGSIL-------NEISARSVMKTKISMKELLDMDADGDGKVSQLEYLCYMLVKLNKVDQDDLDGIIAQFHKLDRDGSGELDRDDLERLDRELQRQ 394          
BLAST of NO29G01710 vs. NCBI_GenBank
Match: ETK79952.1 (hypothetical protein L915_14245 [Phytophthora parasitica])

HSP 1 Score: 100.1 bits (248), Expect = 8.300e-18
Identity = 60/167 (35.93%), Postives = 91/167 (54.49%), Query Frame = 0
Query:    2 VIRALVPVILVNAIGAGSI-GYLENWTQIDVVYYAVITATTIGYGDLHPDNDLAYVLASIYIPFAVFAVGNFVSTMAEYYMHQSEERRRAELLTRKYEFEELLAMDENNDGSVDIMEFTIYLLKLWGMVDDGILDAINARFRELDTDGSGQLTKEDFIEAVAEPERK 168
            +  A VP+++  +I AG I G +E W  +D  YY +IT TTIG+GDL P ++ A + A  Y+P AV  V + + ++         E     ++  K   +ELL MD + DG V  +E+  Y+L     VD   LD I A+F +LD DGSG+L ++D      E +R+
Sbjct:  238 IFHAFVPIVI--SIMAGLIVGAIEGWPVLDCFYYTLITITTIGFGDLSPKSESARIFAIFYLPLAVVTVAHGIGSIL-------NEISARSVMKTKISMKELLDMDADGDGKVSQLEYLCYMLVKLNKVDQDDLDGIIAQFHKLDRDGSGELDRDDLERLDRELQRQ 395          
The following BLAST results are available for this feature:
BLAST of NO29G01710 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM20296.18.500e-7178.16EF-Hand 1, calcium-binding site [Nannochloropsis g... [more]
XP_005854952.12.500e-5481.68hypothetical protein NGA_0381200, partial [Nannoch... [more]
XP_005854953.17.800e-3284.34hypothetical protein NGA_0381300 [Nannochloropsis ... [more]
EWM20297.13.100e-2876.54EF-Hand 1, calcium-binding site [Nannochloropsis g... [more]
GAX98744.12.300e-2038.55Hypothetical protein PINS_006629 [Pythium insidios... [more]
GAY01894.14.000e-2038.46Hypothetical protein PINS_009721 [Pythium insidios... [more]
CCI49226.13.700e-1835.48unnamed protein product [Albugo candida][more]
GAX21292.14.900e-1831.41potassium channel subfamily K member 16 [Fistulife... [more]
XP_008910304.18.300e-1835.93hypothetical protein PPTG_15051 [Phytophthora para... [more]
ETK79952.18.300e-1835.93hypothetical protein L915_14245 [Phytophthora para... [more]

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Relationships

The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO29G01710.1NO29G01710.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO29G01710.1NO29G01710.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO29G01710 ID=NO29G01710|Name=NO29G01710|organism=Nannochloropsis oceanica|type=gene|length=1429bp
ATGGTCATTAGGGCTCTGGTCCCCGTGgtgaggaaggaagggagggaggg
agggagggagggagggagggagggagggagggcgaggaagattggtagat
ccacacgccctcccgctctcccttcctgatgccctggctcgacacggcac
ttgaatagaacgcaagtcactctaaacctactcctccctcccttcctccc
tccctccctcagATTTTGGTCAACGCTATCGGGGCCGGCTCTATCGGCTA
CCTGGAAAACTGGACGCAGATCGACGTGGTTTATTATGCAGTCATCACAG
CCACCACCATTGGATATGgtacgtctcgcttccctccctccctccctccc
tccctccccagcaaagccagcccaatcgtttatctctcacattccttgtc
catctccccttcctccctccctccctccctccctccctccctccctccct
ccctccctccctccccagGTGACCTACACCCCGACAACGACCTGGCTTAC
GTTCTGGCATCCATTTACATCCCCTTCGCCGTCTTCGCCGTCGGCAATTT
TGTCTCAACCATGGCCGAGTACTATgtgcgtcctccctccctccctccct
ccctttccccccccctccctccctcattcccgcctctcccactcatgtgc
tcagacacgaaccctccctccctccctccttccctccttccctccctccc
tccccatgcccacccctagATGCACCAGAGCGAAGAACGGCGTCGTGCCG
AGCTGCTGACCCGGAAGTACGAGTTCGAGGAGTTGCTGGCCATGGACGAG
AACAATGACGGGAGTGTCGACATCATGGAATTCACGATTTACCTCCTGAA
GCTCTGgtaagggaggggagggagggtgggaggaaggaagggggggagga
aggcggttactgcgcggatcctttcagaaccccttctcatcaaaacttcc
acttatttctggatctttccctccttgcttttatggctgctgctgctgct
gttgctgctgctgctgcagGGGCATGGTGGACGATGGCATCCTGGACGCG
ATTAATGCTCGgtacgtgtctggccttaaagagagtctttggatgctcct
cttcgccgctttttaaacccttataccgacccccttaattaccgcctttc
accttcacacccttaggcctcctccctccttacttctctccctccctccc
tccctccctccctccctcttccagTTTCCGAGAGCTCGACACGGACGGCT
CCGGCCAGCTGACTAAGGAGGATTTTATCGAGGCGGTTGCCGAGCCCGAG
AGGAAGGCTATGCTGCGGGAGATGACGCGCAGAGCGACTCTGAGGAAGAC
GACTACAACACCTTCGCCCGGAATGAATAGGAGTGTGACAAAGGTGGGCT
TTGACTCGCCGGTGCAGGTCCAGACATAA
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protein sequence of NO29G01710.1

>NO29G01710.1-protein ID=NO29G01710.1-protein|Name=NO29G01710.1|organism=Nannochloropsis oceanica|type=polypeptide|length=208bp
MVIRALVPVILVNAIGAGSIGYLENWTQIDVVYYAVITATTIGYGDLHPD
NDLAYVLASIYIPFAVFAVGNFVSTMAEYYMHQSEERRRAELLTRKYEFE
ELLAMDENNDGSVDIMEFTIYLLKLWGMVDDGILDAINARFRELDTDGSG
QLTKEDFIEAVAEPERKAMLREMTRRATLRKTTTTPSPGMNRSVTKVGFD
SPVQVQT*
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Synonyms
Publications