NO29G01710.1, NO29G01710.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO29G01710.1
Unique NameNO29G01710.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length624
Alignment locationchr29:539441..540869 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr29genomechr29:539441..540869 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO29G01710.1 vs.
Match: EWM20296.1 (EF-Hand 1, calcium-binding site [Nannochloropsis gaditana])

HSP 1 Score: 276.2 bits (705), Expect = 8.500e-71
Identity = 136/174 (78.16%), Postives = 159/174 (91.38%), Query Frame = 0 
Query:    1 MVIRALVPVILVNAIGAGSIGYLENWTQIDVVYYAVITATTIGYGDLHPDNDLAYVLASIYIPFAVFAVGNFVSTMAEYYMHQSEERRRAELLTRKYEFEELLAMDENNDGSVDIMEFTIYLLKLWGMVDDGILDAINARFRELDTDGSGQLTKEDFIEAVAEPERKAMLREMT 175
            +V+RAL+PVILVNAIGAG+IGYLE WT+ID+VYYAVI++TTIGYGDLHPDN+  Y++ASIYIPFAV AVGNFV+T+A+YYM +SEE+RRAE+L RKY FEELLAMDENNDGSVDIMEFTIYLLKLWGMVDD IL+AI ARF ELDTD +G LTK +FIEAVAEPER +MLR ++
Sbjct:  280 LVLRALLPVILVNAIGAGTIGYLEGWTEIDIVYYAVISSTTIGYGDLHPDNEATYLVASIYIPFAVVAVGNFVTTIAQYYMGKSEEKRRAEILNRKYAFEELLAMDENNDGSVDIMEFTIYLLKLWGMVDDKILEAIYARFHELDTDNTGLLTKANFIEAVAEPERLSMLRALS 453
The following BLAST results are available for this feature:
BLAST of NO29G01710.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20296.18.500e-7178.16EF-Hand 1, calcium-binding site [Nannochloropsis g... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO29G01710NO29G01710Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO29G01710.1NO29G01710.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO29G01710.1.cds1NO29G01710.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO29G01710.1.cds2NO29G01710.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO29G01710.1.cds3NO29G01710.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO29G01710.1.cds4NO29G01710.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO29G01710.1.cds5NO29G01710.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO29G01710.1.cds6NO29G01710.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO29G01710.1 ID=NO29G01710.1|Name=NO29G01710.1|organism=Nannochloropsis oceanica|type=mRNA|length=624bp
ATGGTCATTAGGGCTCTGGTCCCCGTGATTTTGGTCAACGCTATCGGGGC
CGGCTCTATCGGCTACCTGGAAAACTGGACGCAGATCGACGTGGTTTATT
ATGCAGTCATCACAGCCACCACCATTGGATATGGTGACCTACACCCCGAC
AACGACCTGGCTTACGTTCTGGCATCCATTTACATCCCCTTCGCCGTCTT
CGCCGTCGGCAATTTTGTCTCAACCATGGCCGAGTACTATATGCACCAGA
GCGAAGAACGGCGTCGTGCCGAGCTGCTGACCCGGAAGTACGAGTTCGAG
GAGTTGCTGGCCATGGACGAGAACAATGACGGGAGTGTCGACATCATGGA
ATTCACGATTTACCTCCTGAAGCTCTGGGGCATGGTGGACGATGGCATCC
TGGACGCGATTAATGCTCGTTTCCGAGAGCTCGACACGGACGGCTCCGGC
CAGCTGACTAAGGAGGATTTTATCGAGGCGGTTGCCGAGCCCGAGAGGAA
GGCTATGCTGCGGGAGATGACGCGCAGAGCGACTCTGAGGAAGACGACTA
CAACACCTTCGCCCGGAATGAATAGGAGTGTGACAAAGGTGGGCTTTGAC
TCGCCGGTGCAGGTCCAGACATAA
back to top

protein sequence of NO29G01710.1

>NO29G01710.1-protein ID=NO29G01710.1-protein|Name=NO29G01710.1|organism=Nannochloropsis oceanica|type=polypeptide|length=208bp
MVIRALVPVILVNAIGAGSIGYLENWTQIDVVYYAVITATTIGYGDLHPD
NDLAYVLASIYIPFAVFAVGNFVSTMAEYYMHQSEERRRAELLTRKYEFE
ELLAMDENNDGSVDIMEFTIYLLKLWGMVDDGILDAINARFRELDTDGSG
QLTKEDFIEAVAEPERKAMLREMTRRATLRKTTTTPSPGMNRSVTKVGFD
SPVQVQT*
back to top

mRNA from alignment at chr29:539441..540869+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO29G01710.1 ID=NO29G01710.1|Name=NO29G01710.1|organism=Nannochloropsis oceanica|type=mRNA|length=1429bp|location=Sequence derived from alignment at chr29:539441..540869+ (Nannochloropsis oceanica)
ATGGTCATTAGGGCTCTGGTCCCCGTGGTGAGGAAGGAAGGGAGGGAGGG
AGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGCGAGGAAGATTGGTAGAT
CCACACGCCCTCCCGCTCTCCCTTCCTGATGCCCTGGCTCGACACGGCAC
TTGAATAGAACGCAAGTCACTCTAAACCTACTCCTCCCTCCCTTCCTCCC
TCCCTCCCTCAGATTTTGGTCAACGCTATCGGGGCCGGCTCTATCGGCTA
CCTGGAAAACTGGACGCAGATCGACGTGGTTTATTATGCAGTCATCACAG
CCACCACCATTGGATATGGTACGTCTCGCTTCCCTCCCTCCCTCCCTCCC
TCCCTCCCCAGCAAAGCCAGCCCAATCGTTTATCTCTCACATTCCTTGTC
CATCTCCCCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCCAGGTGACCTACACCCCGACAACGACCTGGCTTAC
GTTCTGGCATCCATTTACATCCCCTTCGCCGTCTTCGCCGTCGGCAATTT
TGTCTCAACCATGGCCGAGTACTATGTGCGTCCTCCCTCCCTCCCTCCCT
CCCTTTCCCCCCCCCTCCCTCCCTCATTCCCGCCTCTCCCACTCATGTGC
TCAGACACGAACCCTCCCTCCCTCCCTCCTTCCCTCCTTCCCTCCCTCCC
TCCCCATGCCCACCCCTAGATGCACCAGAGCGAAGAACGGCGTCGTGCCG
AGCTGCTGACCCGGAAGTACGAGTTCGAGGAGTTGCTGGCCATGGACGAG
AACAATGACGGGAGTGTCGACATCATGGAATTCACGATTTACCTCCTGAA
GCTCTGGTAAGGGAGGGGAGGGAGGGTGGGAGGAAGGAAGGGGGGGAGGA
AGGCGGTTACTGCGCGGATCCTTTCAGAACCCCTTCTCATCAAAACTTCC
ACTTATTTCTGGATCTTTCCCTCCTTGCTTTTATGGCTGCTGCTGCTGCT
GTTGCTGCTGCTGCTGCAGGGGCATGGTGGACGATGGCATCCTGGACGCG
ATTAATGCTCGGTACGTGTCTGGCCTTAAAGAGAGTCTTTGGATGCTCCT
CTTCGCCGCTTTTTAAACCCTTATACCGACCCCCTTAATTACCGCCTTTC
ACCTTCACACCCTTAGGCCTCCTCCCTCCTTACTTCTCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCTTCCAGTTTCCGAGAGCTCGACACGGACGGCT
CCGGCCAGCTGACTAAGGAGGATTTTATCGAGGCGGTTGCCGAGCCCGAG
AGGAAGGCTATGCTGCGGGAGATGACGCGCAGAGCGACTCTGAGGAAGAC
GACTACAACACCTTCGCCCGGAATGAATAGGAGTGTGACAAAGGTGGGCT
TTGACTCGCCGGTGCAGGTCCAGACATAA
back to top

Coding sequence (CDS) from alignment at chr29:539441..540869+

>NO29G01710.1 ID=NO29G01710.1|Name=NO29G01710.1|organism=Nannochloropsis oceanica|type=CDS|length=624bp|location=Sequence derived from alignment at chr29:539441..540869+ (Nannochloropsis oceanica)
ATGGTCATTAGGGCTCTGGTCCCCGTGATTTTGGTCAACGCTATCGGGGC
CGGCTCTATCGGCTACCTGGAAAACTGGACGCAGATCGACGTGGTTTATT
ATGCAGTCATCACAGCCACCACCATTGGATATGGTGACCTACACCCCGAC
AACGACCTGGCTTACGTTCTGGCATCCATTTACATCCCCTTCGCCGTCTT
CGCCGTCGGCAATTTTGTCTCAACCATGGCCGAGTACTATATGCACCAGA
GCGAAGAACGGCGTCGTGCCGAGCTGCTGACCCGGAAGTACGAGTTCGAG
GAGTTGCTGGCCATGGACGAGAACAATGACGGGAGTGTCGACATCATGGA
ATTCACGATTTACCTCCTGAAGCTCTGGGGCATGGTGGACGATGGCATCC
TGGACGCGATTAATGCTCGTTTCCGAGAGCTCGACACGGACGGCTCCGGC
CAGCTGACTAAGGAGGATTTTATCGAGGCGGTTGCCGAGCCCGAGAGGAA
GGCTATGCTGCGGGAGATGACGCGCAGAGCGACTCTGAGGAAGACGACTA
CAACACCTTCGCCCGGAATGAATAGGAGTGTGACAAAGGTGGGCTTTGAC
TCGCCGGTGCAGGTCCAGACATAA
back to top
Synonyms
Publications