NO29G01650, NO29G01650 (gene) Nannochloropsis oceanica

Overview
NameNO29G01650
Unique NameNO29G01650
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1842
Alignment locationchr29:518016..519857 +

Link to JBrowse

Properties
Property NameValue
DescriptionAnkyrin
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr29genomechr29:518016..519857 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036770Ankyrin_rpt-contain_sf
IPR020683Ankyrin_rpt-contain_dom
IPR002110Ankyrin_rpt
Homology
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BLAST of NO29G01650 vs. NCBI_GenBank
Match: EWM21347.1 (ankyrin [Nannochloropsis gaditana])

HSP 1 Score: 342.0 bits (876), Expect = 2.800e-90
Identity = 261/469 (55.65%), Postives = 298/469 (63.54%), Query Frame = 0 
Query:    1 MITFKSPFKGGKYPDIRADGPVNTAAFHGDIDTLKTLLETHGRHSLAFLPQGPQNWDALMVASFTGQVEVVRFLLDTAHFPLEQRDSKLRTPIHLATKSGSIAVVRLLLERGADPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGHSHCGGGRGGTCGRAGEEAAAEAGVKLLLLYGAQVDIGDTSGHTPLHLAAASSSVGVVRLLLELGGADPTKRDRQGMLALGLAKGREVEAMLKAAPYQVYCLNKLRCVVGMM-VEGREEGGVGAEEERQKGGNGEKYGREKERDSNELVSSSRSQFALPLTKTD---CQHLTAVEEVRHAIGRVRQAIEPPRPMPRAEFHHMTDTGSEGEEQDGSDGKSGDVNGGAWTMASFSSPVVLSAPQAPEVSPETAPAPXXXXXXXXXXXXXXXXXXXADLAARVLEEATRRMNGDLFFELLGMLWSW 466
            MI  ++PF GGK PDI ADGP N+AAF GDIDTLK+LL+ HGR S+AF P+GP +W+ALMVASF GQV+ VRFL+D A F +E+RD+ LRTPIHLATKSGSI VVRLLL       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  GG+SHCGGGRGG CGR G E A E GVK LLLYGAQVDIGD +GHTPLHLAAASS V VV LLL LGGA+P+  D++GM  L LAK + VE ML+AAPYQ Y L K+RC+VG+M  E +E+G  G            K GR    D++   S  R+  A  L  T+    +   AVE VRH I   RQ +EPPRPMPR  FH        G  +DG                          P+ P       P P                    DL   VL+ A + MNGDLF ELLG LWSW
Sbjct:   27 MIPSRAPFTGGKCPDIHADGPANSAAFDGDIDTLKSLLKAHGRRSVAFAPRGPYSWNALMVASFAGQVDTVRFLIDEAGFCVEERDTCLRTPIHLATKSGSICVVRLLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEGGYSHCGGGRGGMCGRVGHELAVEKGVKRLLLYGAQVDIGDHAGHTPLHLAAASSKVNVVSLLLGLGGANPSVEDKEGMTPLSLAKNKMVEEMLEAAPYQAYQLEKMRCLVGLMGTENKEDGHYG------------KLGRVLTDDAHARESEDRATTAPSLIYTNGKIARPAKAVERVRHLISLRRQTLEPPRPMPRVHFH--------GRGEDG--------------------------PRRP-----VHPIP--------------------DLPVCVLQLAVQHMNGDLFKELLGFLWSW 424
The following BLAST results are available for this feature:
BLAST of NO29G01650 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21347.12.800e-9055.65ankyrin [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL062nonsL062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR038ncniR038Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR079ngnoR079Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005258NSK005258Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO29G01650.1NO29G01650.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601672gene_8344Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100075g14gene9079Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO29G01650.1NO29G01650.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO29G01650 ID=NO29G01650|Name=NO29G01650|organism=Nannochloropsis oceanica|type=gene|length=1842bp
CCAGCAGAGCTGTGGCACCGTGAGCGAGGATAAATGATCACGTTCAAGTC
CCCATTCAAAGGCGGCAAGTATCCAGgtaggtaagccgtctcgtccgttt
cccatcgcattcgccctccatatggcccgtctcggggcaggcggtcttca
catgttgtctgtctcgagtagaatgcctccatcccggctattttcaaagc
attgaccaaacgagtatgttttccaccgattcgatccttgtcagttgtcg
ggttatgtttgttatgtttcctttcgcgcctactgtctgcttgcttggat
tctcctgtcctcacccggtcactacccctcctgccctccctgccctctct
tcctaacccctcgacacgcatgaacagACATCCGCGCAGACGGCCCAGTC
AACACGGCAGCTTTTCATGGCGACATCGACACGCTCAAGACACTCCTCGA
GACACACGGTAGGCATTCTCTTGCCTTCCTCCCGCAAGGACCCCAGAATT
GGGACGCCTTGATGGTCGCCTCCTTTACCGGGCAAGTAGAAGTTGTCCGC
TTTCTGCTGGACACTGCCCATTTTCCCCTTGAACAGCGGGATAGTAAGCT
GCGGACCCCTATTCATTTAGCGACCAAGTCAGGCAGCATCGCGGTTGTAA
GACTTCTCCTGGAACGCGGCGCTGACCCCGATAGGATGGATGAAGCGCAA
CGGACTGCCCTGACGTACGCCGCCGCCGCGCACAATGTGACGTTACTGAG
TTGTTTGTTGGATGGTGGCGCCGATCCCGATGTAACGGATCAATCGCTTC
GGTCTTGTTTGCACTATCTGGCGGAAGGGGGCCACTCGCACTGTGGCGGT
GGGAGAGGAGGGACATGTGGGAGGGCAGGAGAGGAGGCTGCGGCAGAGGC
AGGGGTGAAGTTGTTGTTGCTGTATGGGGCCCAGGTTGATATTGGGGATA
CATCAGGGCATACGCCTTTGCACCTGGCGGCGGCATCGTCGTCTGTAGGG
GTGGTAAGGTTGTTGTTGGAATTGGGAGGGGCGGATCCGACGAAAAGGGA
CAGGCAGGGCATGCTAGCCTTGGGGTTGGCGAAGGGGAGGGAGGTGGAGG
CTATGTTGAAGGCCGCGCCGTACCAGGTGTATTGCTTGAATAAGTTGAGG
TGTGTGGTGGGCATGATGGTCGAGGGACGAGAAGAGGGAGGGGTGGGAGC
GGAGGAGGAGAGGCAAAAGGGGGGGAATGGTGAGAAGTATGGAAGGGAGA
AAGAGCGGGATTCAAATGAACTTGTATCTTCCTCTCGCTCCCAATTCGCT
CTGCCGTTGACGAAGACGGATTGCCAGCATTTGACGGCGGTGGAGGAGGT
GCGGCATGCGATCGGTCGAGTTCGGCAAGCCATAGAGCCACCCCGGCCGA
TGCCCCGCGCGGAGTTTCACCACATGACGGACACAGGAAGCGAGGGAGAG
GAGCAAGACGGCAGTGACGGTAAGAGTGGGGATGTGAATGGAGGAGCGTG
GACAATGGCTTCTTTTTCTTCTCCGGTAGTACTGTCAGCACCACAAGCAC
CAGAAGTATCACCAGAAACAGCACCAGCACCAGCAGTAACAGCAGTATCA
CCATCACCAGAAAAAGCACCAGCACCAGCGGTACCAGTAGCAGACCTAGC
TGCGCGCGTTTTGGAGGAGGCCACCCGACGCATGAATGGTGATTTGTTTT
TTGAGCTTCTTGGCATGTTGTGGTCCTGGAGCTACAAATAGGCGACGAGC
TGCTGAATCACAAAATGAATATCTGTGCGCAGAATAAGAATAAGAAGAAG
AGAAAGAGCTAGAAGAAGAAGGAGAAGAGAAAGAGCTAGAAG
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protein sequence of NO29G01650.1

>NO29G01650.1-protein ID=NO29G01650.1-protein|Name=NO29G01650.1|organism=Nannochloropsis oceanica|type=polypeptide|length=469bp
MITFKSPFKGGKYPDIRADGPVNTAAFHGDIDTLKTLLETHGRHSLAFLP
QGPQNWDALMVASFTGQVEVVRFLLDTAHFPLEQRDSKLRTPIHLATKSG
SIAVVRLLLERGADPDRMDEAQRTALTYAAAAHNVTLLSCLLDGGADPDV
TDQSLRSCLHYLAEGGHSHCGGGRGGTCGRAGEEAAAEAGVKLLLLYGAQ
VDIGDTSGHTPLHLAAASSSVGVVRLLLELGGADPTKRDRQGMLALGLAK
GREVEAMLKAAPYQVYCLNKLRCVVGMMVEGREEGGVGAEEERQKGGNGE
KYGREKERDSNELVSSSRSQFALPLTKTDCQHLTAVEEVRHAIGRVRQAI
EPPRPMPRAEFHHMTDTGSEGEEQDGSDGKSGDVNGGAWTMASFSSPVVL
SAPQAPEVSPETAPAPAVTAVSPSPEKAPAPAVPVADLAARVLEEATRRM
NGDLFFELLGMLWSWSYK*
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Synonyms
Publications