NO29G01650.1, NO29G01650.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO29G01650.1
Unique NameNO29G01650.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1541
Alignment locationchr29:518016..519857 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr29genomechr29:518016..519857 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO29G01650.1 vs.
Match: EWM21347.1 (ankyrin [Nannochloropsis gaditana])

HSP 1 Score: 451.8 bits (1161), Expect = 2.500e-123
Identity = 239/372 (64.25%), Postives = 275/372 (73.92%), Query Frame = 0 
Query:    1 MITFKSPFKGGKYPDIRADGPVNTAAFHGDIDTLKTLLETHGRHSLAFLPQGPQNWDALMVASFTGQVEVVRFLLDTAHFPLEQRDSKLRTPIHLATKSGSIAVVRLLLERGADPDRMDEAQRTALTYAAAAHNVTLLSCLLDGGADPDVTDQSLRSCLHYLAEGGHSHCGGGRGGTCGRAGEEAAAEAGVKLLLLYGAQVDIGDTSGHTPLHLAAASSSVGVVRLLLELGGADPTKRDRQGMLALGLAKGREVEAMLKAAPYQVYCLNKLRCVVGMM-VEGREEGGVGAEEERQKGGNGEKYGREKERDSNELVSSSRSQFALPLTKTD---CQHLTAVEEVRHAIGRVRQAIEPPRPMPRAEFHHMTDTG 369
            MI  ++PF GGK PDI ADGP N+AAF GDIDTLK+LL+ HGR S+AF P+GP +W+ALMVASF GQV+ VRFL+D A F +E+RD+ LRTPIHLATKSGSI VVRLLLERGADPD MDEAQRTAL YAAAA+NV LLSCLLDG ADPDVTDQSLRSCLHYL+EGG+SHCGGGRGG CGR G E A E GVK LLLYGAQVDIGD +GHTPLHLAAASS V VV LLL LGGA+P+  D++GM  L LAK + VE ML+AAPYQ Y L K+RC+VG+M  E +E+G  G            K GR    D++   S  R+  A  L  T+    +   AVE VRH I   RQ +EPPRPMPR  FH   + G
Sbjct:   27 MIPSRAPFTGGKCPDIHADGPANSAAFDGDIDTLKSLLKAHGRRSVAFAPRGPYSWNALMVASFAGQVDTVRFLIDEAGFCVEERDTCLRTPIHLATKSGSICVVRLLLERGADPDHMDEAQRTALIYAAAAYNVPLLSCLLDGNADPDVTDQSLRSCLHYLSEGGYSHCGGGRGGMCGRVGHELAVEKGVKRLLLYGAQVDIGDHAGHTPLHLAAASSKVNVVSLLLGLGGANPSVEDKEGMTPLSLAKNKMVEEMLEAAPYQAYQLEKMRCLVGLMGTENKEDGHYG------------KLGRVLTDDAHARESEDRATTAPSLIYTNGKIARPAKAVERVRHLISLRRQTLEPPRPMPRVHFHGRGEDG 386
The following BLAST results are available for this feature:
BLAST of NO29G01650.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21347.12.500e-12364.25ankyrin [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO29G01650NO29G01650Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO29G01650.1NO29G01650.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO29G01650.1.cds1NO29G01650.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO29G01650.1.cds2NO29G01650.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO29G01650.1 ID=NO29G01650.1|Name=NO29G01650.1|organism=Nannochloropsis oceanica|type=mRNA|length=1541bp
CCAGCAGAGCTGTGGCACCGTGAGCGAGGATAAATGATCACGTTCAAGTC
CCCATTCAAAGGCGGCAAGTATCCAGACATCCGCGCAGACGGCCCAGTCA
ACACGGCAGCTTTTCATGGCGACATCGACACGCTCAAGACACTCCTCGAG
ACACACGGTAGGCATTCTCTTGCCTTCCTCCCGCAAGGACCCCAGAATTG
GGACGCCTTGATGGTCGCCTCCTTTACCGGGCAAGTAGAAGTTGTCCGCT
TTCTGCTGGACACTGCCCATTTTCCCCTTGAACAGCGGGATAGTAAGCTG
CGGACCCCTATTCATTTAGCGACCAAGTCAGGCAGCATCGCGGTTGTAAG
ACTTCTCCTGGAACGCGGCGCTGACCCCGATAGGATGGATGAAGCGCAAC
GGACTGCCCTGACGTACGCCGCCGCCGCGCACAATGTGACGTTACTGAGT
TGTTTGTTGGATGGTGGCGCCGATCCCGATGTAACGGATCAATCGCTTCG
GTCTTGTTTGCACTATCTGGCGGAAGGGGGCCACTCGCACTGTGGCGGTG
GGAGAGGAGGGACATGTGGGAGGGCAGGAGAGGAGGCTGCGGCAGAGGCA
GGGGTGAAGTTGTTGTTGCTGTATGGGGCCCAGGTTGATATTGGGGATAC
ATCAGGGCATACGCCTTTGCACCTGGCGGCGGCATCGTCGTCTGTAGGGG
TGGTAAGGTTGTTGTTGGAATTGGGAGGGGCGGATCCGACGAAAAGGGAC
AGGCAGGGCATGCTAGCCTTGGGGTTGGCGAAGGGGAGGGAGGTGGAGGC
TATGTTGAAGGCCGCGCCGTACCAGGTGTATTGCTTGAATAAGTTGAGGT
GTGTGGTGGGCATGATGGTCGAGGGACGAGAAGAGGGAGGGGTGGGAGCG
GAGGAGGAGAGGCAAAAGGGGGGGAATGGTGAGAAGTATGGAAGGGAGAA
AGAGCGGGATTCAAATGAACTTGTATCTTCCTCTCGCTCCCAATTCGCTC
TGCCGTTGACGAAGACGGATTGCCAGCATTTGACGGCGGTGGAGGAGGTG
CGGCATGCGATCGGTCGAGTTCGGCAAGCCATAGAGCCACCCCGGCCGAT
GCCCCGCGCGGAGTTTCACCACATGACGGACACAGGAAGCGAGGGAGAGG
AGCAAGACGGCAGTGACGGTAAGAGTGGGGATGTGAATGGAGGAGCGTGG
ACAATGGCTTCTTTTTCTTCTCCGGTAGTACTGTCAGCACCACAAGCACC
AGAAGTATCACCAGAAACAGCACCAGCACCAGCAGTAACAGCAGTATCAC
CATCACCAGAAAAAGCACCAGCACCAGCGGTACCAGTAGCAGACCTAGCT
GCGCGCGTTTTGGAGGAGGCCACCCGACGCATGAATGGTGATTTGTTTTT
TGAGCTTCTTGGCATGTTGTGGTCCTGGAGCTACAAATAGGCGACGAGCT
GCTGAATCACAAAATGAATATCTGTGCGCAGAATAAGAATAAGAAGAAGA
GAAAGAGCTAGAAGAAGAAGGAGAAGAGAAAGAGCTAGAAG
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protein sequence of NO29G01650.1

>NO29G01650.1-protein ID=NO29G01650.1-protein|Name=NO29G01650.1|organism=Nannochloropsis oceanica|type=polypeptide|length=469bp
MITFKSPFKGGKYPDIRADGPVNTAAFHGDIDTLKTLLETHGRHSLAFLP
QGPQNWDALMVASFTGQVEVVRFLLDTAHFPLEQRDSKLRTPIHLATKSG
SIAVVRLLLERGADPDRMDEAQRTALTYAAAAHNVTLLSCLLDGGADPDV
TDQSLRSCLHYLAEGGHSHCGGGRGGTCGRAGEEAAAEAGVKLLLLYGAQ
VDIGDTSGHTPLHLAAASSSVGVVRLLLELGGADPTKRDRQGMLALGLAK
GREVEAMLKAAPYQVYCLNKLRCVVGMMVEGREEGGVGAEEERQKGGNGE
KYGREKERDSNELVSSSRSQFALPLTKTDCQHLTAVEEVRHAIGRVRQAI
EPPRPMPRAEFHHMTDTGSEGEEQDGSDGKSGDVNGGAWTMASFSSPVVL
SAPQAPEVSPETAPAPAVTAVSPSPEKAPAPAVPVADLAARVLEEATRRM
NGDLFFELLGMLWSWSYK*
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mRNA from alignment at chr29:518016..519857+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO29G01650.1 ID=NO29G01650.1|Name=NO29G01650.1|organism=Nannochloropsis oceanica|type=mRNA|length=1842bp|location=Sequence derived from alignment at chr29:518016..519857+ (Nannochloropsis oceanica)
CCAGCAGAGCTGTGGCACCGTGAGCGAGGATAAATGATCACGTTCAAGTC
CCCATTCAAAGGCGGCAAGTATCCAGGTAGGTAAGCCGTCTCGTCCGTTT
CCCATCGCATTCGCCCTCCATATGGCCCGTCTCGGGGCAGGCGGTCTTCA
CATGTTGTCTGTCTCGAGTAGAATGCCTCCATCCCGGCTATTTTCAAAGC
ATTGACCAAACGAGTATGTTTTCCACCGATTCGATCCTTGTCAGTTGTCG
GGTTATGTTTGTTATGTTTCCTTTCGCGCCTACTGTCTGCTTGCTTGGAT
TCTCCTGTCCTCACCCGGTCACTACCCCTCCTGCCCTCCCTGCCCTCTCT
TCCTAACCCCTCGACACGCATGAACAGACATCCGCGCAGACGGCCCAGTC
AACACGGCAGCTTTTCATGGCGACATCGACACGCTCAAGACACTCCTCGA
GACACACGGTAGGCATTCTCTTGCCTTCCTCCCGCAAGGACCCCAGAATT
GGGACGCCTTGATGGTCGCCTCCTTTACCGGGCAAGTAGAAGTTGTCCGC
TTTCTGCTGGACACTGCCCATTTTCCCCTTGAACAGCGGGATAGTAAGCT
GCGGACCCCTATTCATTTAGCGACCAAGTCAGGCAGCATCGCGGTTGTAA
GACTTCTCCTGGAACGCGGCGCTGACCCCGATAGGATGGATGAAGCGCAA
CGGACTGCCCTGACGTACGCCGCCGCCGCGCACAATGTGACGTTACTGAG
TTGTTTGTTGGATGGTGGCGCCGATCCCGATGTAACGGATCAATCGCTTC
GGTCTTGTTTGCACTATCTGGCGGAAGGGGGCCACTCGCACTGTGGCGGT
GGGAGAGGAGGGACATGTGGGAGGGCAGGAGAGGAGGCTGCGGCAGAGGC
AGGGGTGAAGTTGTTGTTGCTGTATGGGGCCCAGGTTGATATTGGGGATA
CATCAGGGCATACGCCTTTGCACCTGGCGGCGGCATCGTCGTCTGTAGGG
GTGGTAAGGTTGTTGTTGGAATTGGGAGGGGCGGATCCGACGAAAAGGGA
CAGGCAGGGCATGCTAGCCTTGGGGTTGGCGAAGGGGAGGGAGGTGGAGG
CTATGTTGAAGGCCGCGCCGTACCAGGTGTATTGCTTGAATAAGTTGAGG
TGTGTGGTGGGCATGATGGTCGAGGGACGAGAAGAGGGAGGGGTGGGAGC
GGAGGAGGAGAGGCAAAAGGGGGGGAATGGTGAGAAGTATGGAAGGGAGA
AAGAGCGGGATTCAAATGAACTTGTATCTTCCTCTCGCTCCCAATTCGCT
CTGCCGTTGACGAAGACGGATTGCCAGCATTTGACGGCGGTGGAGGAGGT
GCGGCATGCGATCGGTCGAGTTCGGCAAGCCATAGAGCCACCCCGGCCGA
TGCCCCGCGCGGAGTTTCACCACATGACGGACACAGGAAGCGAGGGAGAG
GAGCAAGACGGCAGTGACGGTAAGAGTGGGGATGTGAATGGAGGAGCGTG
GACAATGGCTTCTTTTTCTTCTCCGGTAGTACTGTCAGCACCACAAGCAC
CAGAAGTATCACCAGAAACAGCACCAGCACCAGCAGTAACAGCAGTATCA
CCATCACCAGAAAAAGCACCAGCACCAGCGGTACCAGTAGCAGACCTAGC
TGCGCGCGTTTTGGAGGAGGCCACCCGACGCATGAATGGTGATTTGTTTT
TTGAGCTTCTTGGCATGTTGTGGTCCTGGAGCTACAAATAGGCGACGAGC
TGCTGAATCACAAAATGAATATCTGTGCGCAGAATAAGAATAAGAAGAAG
AGAAAGAGCTAGAAGAAGAAGGAGAAGAGAAAGAGCTAGAAG
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Coding sequence (CDS) from alignment at chr29:518016..519857+

>NO29G01650.1 ID=NO29G01650.1|Name=NO29G01650.1|organism=Nannochloropsis oceanica|type=CDS|length=1407bp|location=Sequence derived from alignment at chr29:518016..519857+ (Nannochloropsis oceanica)
ATGATCACGTTCAAGTCCCCATTCAAAGGCGGCAAGTATCCAGACATCCG
CGCAGACGGCCCAGTCAACACGGCAGCTTTTCATGGCGACATCGACACGC
TCAAGACACTCCTCGAGACACACGGTAGGCATTCTCTTGCCTTCCTCCCG
CAAGGACCCCAGAATTGGGACGCCTTGATGGTCGCCTCCTTTACCGGGCA
AGTAGAAGTTGTCCGCTTTCTGCTGGACACTGCCCATTTTCCCCTTGAAC
AGCGGGATAGTAAGCTGCGGACCCCTATTCATTTAGCGACCAAGTCAGGC
AGCATCGCGGTTGTAAGACTTCTCCTGGAACGCGGCGCTGACCCCGATAG
GATGGATGAAGCGCAACGGACTGCCCTGACGTACGCCGCCGCCGCGCACA
ATGTGACGTTACTGAGTTGTTTGTTGGATGGTGGCGCCGATCCCGATGTA
ACGGATCAATCGCTTCGGTCTTGTTTGCACTATCTGGCGGAAGGGGGCCA
CTCGCACTGTGGCGGTGGGAGAGGAGGGACATGTGGGAGGGCAGGAGAGG
AGGCTGCGGCAGAGGCAGGGGTGAAGTTGTTGTTGCTGTATGGGGCCCAG
GTTGATATTGGGGATACATCAGGGCATACGCCTTTGCACCTGGCGGCGGC
ATCGTCGTCTGTAGGGGTGGTAAGGTTGTTGTTGGAATTGGGAGGGGCGG
ATCCGACGAAAAGGGACAGGCAGGGCATGCTAGCCTTGGGGTTGGCGAAG
GGGAGGGAGGTGGAGGCTATGTTGAAGGCCGCGCCGTACCAGGTGTATTG
CTTGAATAAGTTGAGGTGTGTGGTGGGCATGATGGTCGAGGGACGAGAAG
AGGGAGGGGTGGGAGCGGAGGAGGAGAGGCAAAAGGGGGGGAATGGTGAG
AAGTATGGAAGGGAGAAAGAGCGGGATTCAAATGAACTTGTATCTTCCTC
TCGCTCCCAATTCGCTCTGCCGTTGACGAAGACGGATTGCCAGCATTTGA
CGGCGGTGGAGGAGGTGCGGCATGCGATCGGTCGAGTTCGGCAAGCCATA
GAGCCACCCCGGCCGATGCCCCGCGCGGAGTTTCACCACATGACGGACAC
AGGAAGCGAGGGAGAGGAGCAAGACGGCAGTGACGGTAAGAGTGGGGATG
TGAATGGAGGAGCGTGGACAATGGCTTCTTTTTCTTCTCCGGTAGTACTG
TCAGCACCACAAGCACCAGAAGTATCACCAGAAACAGCACCAGCACCAGC
AGTAACAGCAGTATCACCATCACCAGAAAAAGCACCAGCACCAGCGGTAC
CAGTAGCAGACCTAGCTGCGCGCGTTTTGGAGGAGGCCACCCGACGCATG
AATGGTGATTTGTTTTTTGAGCTTCTTGGCATGTTGTGGTCCTGGAGCTA
CAAATAG
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Synonyms
Publications