NO29G01600, NO29G01600 (gene) Nannochloropsis oceanica

Overview
NameNO29G01600
Unique NameNO29G01600
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1463
Alignment locationchr29:503885..505347 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr29genomechr29:503885..505347 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR029069HotDog_dom
IPR027961DUF4442
Homology
BLAST of NO29G01600 vs. NCBI_GenBank
Match: EWM21345.1 (hypothetical protein Naga_100075g19 [Nannochloropsis gaditana])

HSP 1 Score: 316.2 bits (809), Expect = 6.100e-83
Identity = 157/169 (92.90%), Postives = 163/169 (96.45%), Query Frame = 0
Query:    1 MATRKLNRLATQVAKLTSPLPPAYKPWGYTFAFDMMVKLAGTARIWVEEMSDQRAVVHLKNRRRVQNHIGGIHACGMALAAESATGIVVGMNVPDSALPLCKSMKVNFVRRCEGDIKAEAHLTEEQLTKIHTEEKGDVLVAVQVTDSSGKSPITAEMVWAWVPKVRKEK 170
            M  RKLNRLATQVAKLTSPLP AYKPWGYT AFDMMVKLAGTAR+WVEEMSD+RAVVHLKNRRRVQNHIGGIHACGMALAAESATGIVVGMNVPDSALPLCKSMKVNFVRRCEGDIKA AHLTEEQLTKI++EEKGDVLVAV+VTDSSGKSPITAEMVWAWVPK+RK K
Sbjct:    1 MTCRKLNRLATQVAKLTSPLPAAYKPWGYTLAFDMMVKLAGTARLWVEEMSDKRAVVHLKNRRRVQNHIGGIHACGMALAAESATGIVVGMNVPDSALPLCKSMKVNFVRRCEGDIKAVAHLTEEQLTKINSEEKGDVLVAVEVTDSSGKSPITAEMVWAWVPKLRKGK 169          
BLAST of NO29G01600 vs. NCBI_GenBank
Match: EJK62712.1 (hypothetical protein THAOC_16666 [Thalassiosira oceanica])

HSP 1 Score: 201.8 bits (512), Expect = 1.700e-48
Identity = 98/167 (58.68%), Postives = 128/167 (76.65%), Query Frame = 0
Query:    3 TRKLNRLATQVAKLTSPLPPAYKPWGYTFAFDMMVKLAGTARIWVEEMSDQRAVVHLKNRRRVQNHIGGIHACGMALAAESATGIVVGMNVPDSALPLCKSMKVNFVRRCEGDIKAEAHLTEEQLTKIHTEEKGDVLVAVQVTDSSGKSPITAEMVWAWVPKVRKEK 170
            T KLN++A+ + ++ S LP +  P+  +F F+ MVKLAGTA I ++E+S ++A + L N RRVQNHIGG+HAC MALAAESATGI++GMNVPD+ LPL K+MKV+FVRRC+GDI+AEA L++E   +IH E+KG+V V   V D SG  PI AEM+WAWV K RK K
Sbjct:    2 TYKLNKMASTIQRIQSTLPESMHPFANSFLFNNMVKLAGTAGIRIDELSHKKATISLANARRVQNHIGGLHACSMALAAESATGILIGMNVPDTHLPLIKTMKVDFVRRCKGDIRAEATLSDEDYRRIHEEDKGEVWVPCTVVDESGNEPIKAEMLWAWVAKRRKSK 168          
BLAST of NO29G01600 vs. NCBI_GenBank
Match: CBJ31287.1 (conserved unknown protein [Ectocarpus siliculosus] >CBJ27405.1 conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 177.6 bits (449), Expect = 3.400e-41
Identity = 88/136 (64.71%), Postives = 105/136 (77.21%), Query Frame = 0
Query:   33 FDMMVKLAGTARIWVEEMSDQRAVVHLKNRRRVQNHIGGIHACGMALAAESATGIVVGMNVPDSALPLCKSMKVNFVRRCEGDIKAEAHLTEEQLTKIHTEEKGDVLVAVQVTDSSGKSPITAEMVWAWVPKVRKE 169
            F   VKLAGTA + VEE++  R+VV + N RRVQNHIG +HACGMALAAESATGI+VGM+VPDS LPLCKSM ++F R  +GD+ A A L+EEQLT +  +EKG+  V V VTD SGK PI AE VWAWVPK RK+
Sbjct:   44 FAFQVKLAGTAGVRVEELTPHRSVVKVANVRRVQNHIGSVHACGMALAAESATGILVGMSVPDSRLPLCKSMAIDFTRLSQGDVTAVAELSEEQLTAVRDQEKGEANVQVTVTDESGKEPIRAEFVWAWVPKRRKK 179          
BLAST of NO29G01600 vs. NCBI_GenBank
Match: OQX35543.1 (DUF4442 domain-containing protein [Oceanospirillales bacterium LUC14_002_19_P2])

HSP 1 Score: 175.3 bits (443), Expect = 1.700e-40
Identity = 85/160 (53.12%), Postives = 111/160 (69.38%), Query Frame = 0
Query:    7 NRLATQVAKLTSPLPPAYKPWGYTFAFDMMVKLAGTARIWVEEMSDQRAVVHLKNRRRVQNHIGGIHACGMALAAESATGIVVGMNVPDSALPLCKSMKVNFVRRCEGDIKAEAHLTEEQLTKIHTEEKGDVLVAVQVTDSSGKSPITAEMVWAWVPKVR 167
            NRL+  VAK T   PP  + W  T  F   +K AGTA++ +  +S Q + + +KNR+RVQNHIG +HAC MAL AESATG +VGMNVPD  +P+ KSM +++V+R  GD+ A AHLT+EQ+ +I T EKG+V VAV +TD  G  PI AEM+W W PK R
Sbjct:    6 NRLSRIVAK-TQKAPPFMQSWLLTKVFGTAIKFAGTAKVDIHHLSHQESRLTIKNRKRVQNHIGSVHACAMALLAESATGYIVGMNVPDDRVPVIKSMHIDYVKRATGDLHAVAHLTDEQIQQIQTTEKGEVTVAVTITDEKGVEPIKAEMIWTWTPKRR 164          
BLAST of NO29G01600 vs. NCBI_GenBank
Match: WP_020405245.1 (DUF4442 domain-containing protein [Hahella ganghwensis])

HSP 1 Score: 172.6 bits (436), Expect = 1.100e-39
Identity = 86/162 (53.09%), Postives = 115/162 (70.99%), Query Frame = 0
Query:    5 KLNRLATQVAKLTSPLPPAYKPWGYTFAFDMMVKLAGTARIWVEEMSDQRAVVHLKNRRRVQNHIGGIHACGMALAAESATGIVVGMNVPDSALPLCKSMKVNFVRRCEGDIKAEAHLTEEQLTKIHTEEKGDVLVAVQVTDSSGKSPITAEMVWAWVPKVR 167
            +LNR+ +++    + LP   +    T  F   VK  GTA   VEE+SDQR VV LKNR+RVQNHIG +HA   AL AE+ATG VVGMN+PDS++P+ K+MK+++V+R  GD++AEA LTEEQ+  I T+EKG++ VAV +TD+  K P+ AEMVWAW P  R
Sbjct:    3 QLNRIVSKI----NLLPRFARSRALTTFFGKTVKFVGTANATVEELSDQRCVVTLKNRKRVQNHIGSVHAVANALIAETATGFVVGMNIPDSSVPVIKTMKLDYVKRSTGDMRAEARLTEEQVEAIRTQEKGEITVAVSITDAENKEPVLAEMVWAWTPNRR 160          
BLAST of NO29G01600 vs. NCBI_GenBank
Match: WP_011394570.1 (DUF4442 domain-containing protein [Hahella chejuensis] >ABC27493.1 conserved hypothetical protein [Hahella chejuensis KCTC 2396])

HSP 1 Score: 171.4 bits (433), Expect = 2.400e-39
Identity = 86/161 (53.42%), Postives = 116/161 (72.05%), Query Frame = 0
Query:    6 LNRLATQVAKLTSPLPPAYKPWGYTFAFDMMVKLAGTARIWVEEMSDQRAVVHLKNRRRVQNHIGGIHACGMALAAESATGIVVGMNVPDSALPLCKSMKVNFVRRCEGDIKAEAHLTEEQLTKIHTEEKGDVLVAVQVTDSSGKSPITAEMVWAWVPKVR 167
            +N+L + V+K+ + LP   +    T  F  +VK AGT  I VEE++  R ++ LKNRR V+NHIG +HA   AL AESATG +VGMNVPD A+P+ K+MK+++V+R +GD++AEAHLTEEQ+  I T EKG+V VAV +TDS  K P+ AEM+WAW PK R
Sbjct:    1 MNKLMSIVSKI-NLLPEIARSRALTLFFGKVVKYAGTTGIVVEELTGHRCIITLKNRRAVRNHIGSVHAVANALIAESATGFLVGMNVPDHAVPVIKTMKLDYVKRAKGDMRAEAHLTEEQIHAIQTLEKGEVTVAVAITDSEDKEPVMAEMIWAWTPKRR 160          
BLAST of NO29G01600 vs. NCBI_GenBank
Match: WP_094705608.1 (DUF4442 domain-containing protein [Hahella sp. CCB-MM4] >OZG75117.1 DUF4442 domain-containing protein [Hahella sp. CCB-MM4])

HSP 1 Score: 171.4 bits (433), Expect = 2.400e-39
Identity = 85/161 (52.80%), Postives = 115/161 (71.43%), Query Frame = 0
Query:    6 LNRLATQVAKLTSPLPPAYKPWGYTFAFDMMVKLAGTARIWVEEMSDQRAVVHLKNRRRVQNHIGGIHACGMALAAESATGIVVGMNVPDSALPLCKSMKVNFVRRCEGDIKAEAHLTEEQLTKIHTEEKGDVLVAVQVTDSSGKSPITAEMVWAWVPKVR 167
            +N+L   V+K+ + LP   +    T  F   VK  GTA   VEE+SD R VV LKNR+R+QNHIG +HA   AL AE+ATG +VGMNVPDS++P+ K+MK+++V+R  GD++AEA LT+EQ+  I T+EKG+V V V +TD+ GK P+ AEM+WAW PK R
Sbjct:    1 MNQLNKIVSKI-NLLPEVARSRALTLFFGKTVKFVGTAGAKVEELSDSRCVVTLKNRKRIQNHIGSVHAVANALIAETATGFIVGMNVPDSSVPVIKTMKLDYVKRTAGDMRAEACLTDEQINAIQTQEKGEVAVPVTITDAEGKEPVVAEMIWAWTPKRR 160          
BLAST of NO29G01600 vs. NCBI_GenBank
Match: OQR80918.1 (hypothetical protein ACHHYP_17064 [Achlya hypogyna])

HSP 1 Score: 170.2 bits (430), Expect = 5.400e-39
Identity = 90/160 (56.25%), Postives = 116/160 (72.50%), Query Frame = 0
Query:    6 LNRLATQVAKLT-SPLPPAYKPWGYTFAFDMMVKLAGTARIWVEEMSDQRAVVHLKNRRRVQNHIGGIHACGMALAAESATGIVVGMNVPDSALPLCKSMKVNFVRRCEGDIKAEAHLTEEQLTKIHTEEKGDVLVAVQVTDSSGKSPITAEMVWAWVPK 165
            +N+L   VAK+  S LP   +    + AF+  VK+AG A I VE +++Q++VV LKN  RVQNHIGG+HACGMAL AESA+G+V GMNV DS LPL KSM +N+V+R +GD+KA A LT+ Q  +I  E+KG+VLV V VTDS+G SP+  EM W WVPK
Sbjct:    5 VNKLGKIVAKINGSGLPSFLRESALSTAFNAQVKMAGVAGIHVESLTEQQSVVSLKNTFRVQNHIGGVHACGMALLAESASGMVFGMNVRDSHLPLLKSMSMNYVKRAKGDLKAIATLTDAQRNEIAKEDKGEVLVNVVVTDSAGDSPVECEMRWVWVPK 164          
BLAST of NO29G01600 vs. NCBI_GenBank
Match: XP_009839692.1 (hypothetical protein H257_13746 [Aphanomyces astaci] >ETV71029.1 hypothetical protein H257_13746 [Aphanomyces astaci])

HSP 1 Score: 169.5 bits (428), Expect = 9.200e-39
Identity = 84/164 (51.22%), Postives = 115/164 (70.12%), Query Frame = 0
Query:    7 NRLATQVAKLT-SPLPPAYKPWGYTFAFDMMVKLAGTARIWVEEMSDQRAVVHLKNRRRVQNHIGGIHACGMALAAESATGIVVGMNVPDSALPLCKSMKVNFVRRCEGDIKAEAHLTEEQLTKIHTEEKGDVLVAVQVTDSSGKSPITAEMVWAWVPKVRKEK 170
            N+LA  VAK+  S LP   +    + AF+  VK+AG A I +E +++ ++V+HLKNR RVQNHIGG+HACGMAL AESA+G+V G+NV D+ LPL KSM +N+V+R  GD+KA A LT EQ   I  ++KG+++V V +TD  G+ P+  +M WAW PK R  K
Sbjct:    5 NKLAGLVAKINQSGLPSFLRESALSLAFNSQVKMAGVAGIHIESLTESQSVLHLKNRFRVQNHIGGVHACGMALLAESASGVVFGVNVKDTHLPLLKSMSINYVKRAHGDLKAVATLTPEQREAIQRDDKGNLVVDVVLTDEKGEQPVECQMTWAWTPKKRSTK 168          
BLAST of NO29G01600 vs. NCBI_GenBank
Match: XP_008605323.1 (hypothetical protein SDRG_01568 [Saprolegnia diclina VS20] >EQC41609.1 hypothetical protein SDRG_01568 [Saprolegnia diclina VS20])

HSP 1 Score: 169.1 bits (427), Expect = 1.200e-38
Identity = 88/160 (55.00%), Postives = 116/160 (72.50%), Query Frame = 0
Query:    6 LNRLATQVAKLTSPLPPAY-KPWGYTFAFDMMVKLAGTARIWVEEMSDQRAVVHLKNRRRVQNHIGGIHACGMALAAESATGIVVGMNVPDSALPLCKSMKVNFVRRCEGDIKAEAHLTEEQLTKIHTEEKGDVLVAVQVTDSSGKSPITAEMVWAWVPK 165
            +N+L   VAK+ S   PA+ +    + AF+  VK+AG A I VE +++Q++VV LKN  RVQNHIGG+HACGMAL AESA+G+V GMNV DS LPL KSM +++V+R +GD+KA A LT+ Q  +I   +KG+VLV V VTDS+G SP+  EM W WVPK
Sbjct:    5 VNKLGKLVAKINSSSAPAFLREGALSTAFNAQVKMAGVAGIHVETLTEQKSVVSLKNSFRVQNHIGGVHACGMALLAESASGMVFGMNVRDSHLPLLKSMSMSYVKRAKGDLKAVATLTDAQRDEIAKSDKGEVLVNVVVTDSAGDSPVECEMRWVWVPK 164          
The following BLAST results are available for this feature:
BLAST of NO29G01600 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM21345.16.100e-8392.90hypothetical protein Naga_100075g19 [Nannochlorops... [more]
EJK62712.11.700e-4858.68hypothetical protein THAOC_16666 [Thalassiosira oc... [more]
CBJ31287.13.400e-4164.71conserved unknown protein [Ectocarpus siliculosus]... [more]
OQX35543.11.700e-4053.13DUF4442 domain-containing protein [Oceanospirillal... [more]
WP_020405245.11.100e-3953.09DUF4442 domain-containing protein [Hahella ganghwe... [more]
WP_011394570.12.400e-3953.42DUF4442 domain-containing protein [Hahella chejuen... [more]
WP_094705608.12.400e-3952.80DUF4442 domain-containing protein [Hahella sp. CCB... [more]
OQR80918.15.400e-3956.25hypothetical protein ACHHYP_17064 [Achlya hypogyna... [more]
XP_009839692.19.200e-3951.22hypothetical protein H257_13746 [Aphanomyces astac... [more]
XP_008605323.11.200e-3855.00hypothetical protein SDRG_01568 [Saprolegnia dicli... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL062nonsL062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR038ncniR038Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR079ngnoR079Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005263NSK005263Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO29G01600.1NO29G01600.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601653gene_8339Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100075g19gene9074Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO29G01600.1NO29G01600.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO29G01600 ID=NO29G01600|Name=NO29G01600|organism=Nannochloropsis oceanica|type=gene|length=1463bp
ACCCCCCCTCTTCTTCTTCTTGTCACCGCCACCAATGCCATTGGGTCCAT
CCTTTTGCAGACATACTCGTGCAGCCTCAGGCTGCCAACAGACCAAGAGC
CAGGTGAAGGCATCCACGCACCGCATCTGGAACAAGAGGCTGAAGTCGTC
TTGTTGGATGACGTTCTCGACGCGGCCTGGTATTAGCTGCTCTTTCATTT
CTTGGGCCACAAGTACCATCGTGGTATAGTCCAGAGTTTGGAGTCGCGGG
AGATGTTGACGTTCGGCATTGATGGCGACAGGGGTAACGACGACGGCTGA
GGTCGAGGCTAGTCTTGATGGTGGGCGGGGAAGTATGGAGGAGGTAAAGA
CGAAGGCATCAAGACATGTCGGAAGCAGGGCAAAGAACAGGAGGTGGAGG
TAACGCCCCTCCATCATCGTCAACGTGAAGAATAAGATGCGGGCTATCGC
GTCTGCATCTGTGTAGTTTGGAGTGAGTTTCGGCTGTAGGGGGGGATATT
GTTGCTTGATGATGACGTGTGTGTTTCCGTGCTGGGATCACTCTCATGAT
GCGAGTCTCATCACTACACTTTGTTTTTTTGACTATGCCATTCCAATCTT
ACGCCCCTCGGACAAGCCAAGCTGACTTCTCCCTTACAGTCCCCATCACA
ATTCGCAAGCAGTGGCGCCGTCGCGTTCCCCAAGCCCTGAGAGCTCGTCA
TAATCAAAACTATCGCCAATCAACCGCATCCCCCGCCCTCCGCTTTACGC
CCTTTTAGAAGCAGCCATGGCGACCCGAAAGCTCAATCGACTGGCAACGC
AGGTGGCTAAGCTCACGAGCCCGCTGCCGCCCGCTTACAAGCCGTGGGGA
TACACGTTTGCCTTTGACATGATGgtatgtacttacctttcccgttagca
tctcctttaattcctatgtcgttttccccttactacgtgatgcccccagc
tcttaacctcaccctttgagcaatacacgcgtcaacacagGTGAAACTGG
CCGGAACGGCCCGGATCTGGGTGGAGGAAATGTCGGACCAACGAGCCGTG
GTGCATTTGAAGAACCGACGCCGGGTCCAGAATCACATCGGCGGCATTCA
CGCTTGTGGGATGGCCCTGGCCGCGGAGAGTGCTACGGGGATTGTGGTAG
GAATGAACGTCCCGGACTCAGCGTTGCCATTGTGCAAGAGTATGAAGGTG
AACTTTGTGCGGCGGTGCGAGGGGGACATCAAGGCCGAGGCCCATCTGAC
CGAGGAGCAGTTGACTAAAATACACACGGAGGAGAAGGGAGACGTGCTGG
TTGCAGTGCAGGTGACAGACTCGAGTGGAAAGAGCCCGATTACTGCAGAG
ATGGTGTGGGCGTGGGTGCCTAAAGTGAGAAAAGAGAAGAAATGAAGTTG
AAGACGGTGGAGGTGGTGGGGCTCTTTGATGCCTCGACGGGCTCAATAGC
AAAAAAAAGGAAA
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protein sequence of NO29G01600.1

>NO29G01600.1-protein ID=NO29G01600.1-protein|Name=NO29G01600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=171bp
MATRKLNRLATQVAKLTSPLPPAYKPWGYTFAFDMMVKLAGTARIWVEEM
SDQRAVVHLKNRRRVQNHIGGIHACGMALAAESATGIVVGMNVPDSALPL
CKSMKVNFVRRCEGDIKAEAHLTEEQLTKIHTEEKGDVLVAVQVTDSSGK
SPITAEMVWAWVPKVRKEKK*
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Synonyms
Publications