NO29G01600.1, NO29G01600.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO29G01600.1
Unique NameNO29G01600.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1347
Alignment locationchr29:503885..505347 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr29genomechr29:503885..505347 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO29G01600.1 vs.
Match: EWM21345.1 (hypothetical protein Naga_100075g19 [Nannochloropsis gaditana])

HSP 1 Score: 316.2 bits (809), Expect = 6.100e-83
Identity = 157/169 (92.90%), Postives = 163/169 (96.45%), Query Frame = 0 
Query:    1 MATRKLNRLATQVAKLTSPLPPAYKPWGYTFAFDMMVKLAGTARIWVEEMSDQRAVVHLKNRRRVQNHIGGIHACGMALAAESATGIVVGMNVPDSALPLCKSMKVNFVRRCEGDIKAEAHLTEEQLTKIHTEEKGDVLVAVQVTDSSGKSPITAEMVWAWVPKVRKEK 170
            M  RKLNRLATQVAKLTSPLP AYKPWGYT AFDMMVKLAGTAR+WVEEMSD+RAVVHLKNRRRVQNHIGGIHACGMALAAESATGIVVGMNVPDSALPLCKSMKVNFVRRCEGDIKA AHLTEEQLTKI++EEKGDVLVAV+VTDSSGKSPITAEMVWAWVPK+RK K
Sbjct:    1 MTCRKLNRLATQVAKLTSPLPAAYKPWGYTLAFDMMVKLAGTARLWVEEMSDKRAVVHLKNRRRVQNHIGGIHACGMALAAESATGIVVGMNVPDSALPLCKSMKVNFVRRCEGDIKAVAHLTEEQLTKINSEEKGDVLVAVEVTDSSGKSPITAEMVWAWVPKLRKGK 169
The following BLAST results are available for this feature:
BLAST of NO29G01600.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21345.16.100e-8392.90hypothetical protein Naga_100075g19 [Nannochlorops... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO29G01600NO29G01600Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO29G01600.1NO29G01600.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO29G01600.1.cds1NO29G01600.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO29G01600.1.cds2NO29G01600.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO29G01600.1 ID=NO29G01600.1|Name=NO29G01600.1|organism=Nannochloropsis oceanica|type=mRNA|length=1347bp
ACCCCCCCTCTTCTTCTTCTTGTCACCGCCACCAATGCCATTGGGTCCAT
CCTTTTGCAGACATACTCGTGCAGCCTCAGGCTGCCAACAGACCAAGAGC
CAGGTGAAGGCATCCACGCACCGCATCTGGAACAAGAGGCTGAAGTCGTC
TTGTTGGATGACGTTCTCGACGCGGCCTGGTATTAGCTGCTCTTTCATTT
CTTGGGCCACAAGTACCATCGTGGTATAGTCCAGAGTTTGGAGTCGCGGG
AGATGTTGACGTTCGGCATTGATGGCGACAGGGGTAACGACGACGGCTGA
GGTCGAGGCTAGTCTTGATGGTGGGCGGGGAAGTATGGAGGAGGTAAAGA
CGAAGGCATCAAGACATGTCGGAAGCAGGGCAAAGAACAGGAGGTGGAGG
TAACGCCCCTCCATCATCGTCAACGTGAAGAATAAGATGCGGGCTATCGC
GTCTGCATCTGTGTAGTTTGGAGTGAGTTTCGGCTGTAGGGGGGGATATT
GTTGCTTGATGATGACGTGTGTGTTTCCGTGCTGGGATCACTCTCATGAT
GCGAGTCTCATCACTACACTTTGTTTTTTTGACTATGCCATTCCAATCTT
ACGCCCCTCGGACAAGCCAAGCTGACTTCTCCCTTACAGTCCCCATCACA
ATTCGCAAGCAGTGGCGCCGTCGCGTTCCCCAAGCCCTGAGAGCTCGTCA
TAATCAAAACTATCGCCAATCAACCGCATCCCCCGCCCTCCGCTTTACGC
CCTTTTAGAAGCAGCCATGGCGACCCGAAAGCTCAATCGACTGGCAACGC
AGGTGGCTAAGCTCACGAGCCCGCTGCCGCCCGCTTACAAGCCGTGGGGA
TACACGTTTGCCTTTGACATGATGGTGAAACTGGCCGGAACGGCCCGGAT
CTGGGTGGAGGAAATGTCGGACCAACGAGCCGTGGTGCATTTGAAGAACC
GACGCCGGGTCCAGAATCACATCGGCGGCATTCACGCTTGTGGGATGGCC
CTGGCCGCGGAGAGTGCTACGGGGATTGTGGTAGGAATGAACGTCCCGGA
CTCAGCGTTGCCATTGTGCAAGAGTATGAAGGTGAACTTTGTGCGGCGGT
GCGAGGGGGACATCAAGGCCGAGGCCCATCTGACCGAGGAGCAGTTGACT
AAAATACACACGGAGGAGAAGGGAGACGTGCTGGTTGCAGTGCAGGTGAC
AGACTCGAGTGGAAAGAGCCCGATTACTGCAGAGATGGTGTGGGCGTGGG
TGCCTAAAGTGAGAAAAGAGAAGAAATGAAGTTGAAGACGGTGGAGGTGG
TGGGGCTCTTTGATGCCTCGACGGGCTCAATAGCAAAAAAAAGGAAA
back to top

protein sequence of NO29G01600.1

>NO29G01600.1-protein ID=NO29G01600.1-protein|Name=NO29G01600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=171bp
MATRKLNRLATQVAKLTSPLPPAYKPWGYTFAFDMMVKLAGTARIWVEEM
SDQRAVVHLKNRRRVQNHIGGIHACGMALAAESATGIVVGMNVPDSALPL
CKSMKVNFVRRCEGDIKAEAHLTEEQLTKIHTEEKGDVLVAVQVTDSSGK
SPITAEMVWAWVPKVRKEKK*
back to top

mRNA from alignment at chr29:503885..505347+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO29G01600.1 ID=NO29G01600.1|Name=NO29G01600.1|organism=Nannochloropsis oceanica|type=mRNA|length=1463bp|location=Sequence derived from alignment at chr29:503885..505347+ (Nannochloropsis oceanica)
ACCCCCCCTCTTCTTCTTCTTGTCACCGCCACCAATGCCATTGGGTCCAT
CCTTTTGCAGACATACTCGTGCAGCCTCAGGCTGCCAACAGACCAAGAGC
CAGGTGAAGGCATCCACGCACCGCATCTGGAACAAGAGGCTGAAGTCGTC
TTGTTGGATGACGTTCTCGACGCGGCCTGGTATTAGCTGCTCTTTCATTT
CTTGGGCCACAAGTACCATCGTGGTATAGTCCAGAGTTTGGAGTCGCGGG
AGATGTTGACGTTCGGCATTGATGGCGACAGGGGTAACGACGACGGCTGA
GGTCGAGGCTAGTCTTGATGGTGGGCGGGGAAGTATGGAGGAGGTAAAGA
CGAAGGCATCAAGACATGTCGGAAGCAGGGCAAAGAACAGGAGGTGGAGG
TAACGCCCCTCCATCATCGTCAACGTGAAGAATAAGATGCGGGCTATCGC
GTCTGCATCTGTGTAGTTTGGAGTGAGTTTCGGCTGTAGGGGGGGATATT
GTTGCTTGATGATGACGTGTGTGTTTCCGTGCTGGGATCACTCTCATGAT
GCGAGTCTCATCACTACACTTTGTTTTTTTGACTATGCCATTCCAATCTT
ACGCCCCTCGGACAAGCCAAGCTGACTTCTCCCTTACAGTCCCCATCACA
ATTCGCAAGCAGTGGCGCCGTCGCGTTCCCCAAGCCCTGAGAGCTCGTCA
TAATCAAAACTATCGCCAATCAACCGCATCCCCCGCCCTCCGCTTTACGC
CCTTTTAGAAGCAGCCATGGCGACCCGAAAGCTCAATCGACTGGCAACGC
AGGTGGCTAAGCTCACGAGCCCGCTGCCGCCCGCTTACAAGCCGTGGGGA
TACACGTTTGCCTTTGACATGATGGTATGTACTTACCTTTCCCGTTAGCA
TCTCCTTTAATTCCTATGTCGTTTTCCCCTTACTACGTGATGCCCCCAGC
TCTTAACCTCACCCTTTGAGCAATACACGCGTCAACACAGGTGAAACTGG
CCGGAACGGCCCGGATCTGGGTGGAGGAAATGTCGGACCAACGAGCCGTG
GTGCATTTGAAGAACCGACGCCGGGTCCAGAATCACATCGGCGGCATTCA
CGCTTGTGGGATGGCCCTGGCCGCGGAGAGTGCTACGGGGATTGTGGTAG
GAATGAACGTCCCGGACTCAGCGTTGCCATTGTGCAAGAGTATGAAGGTG
AACTTTGTGCGGCGGTGCGAGGGGGACATCAAGGCCGAGGCCCATCTGAC
CGAGGAGCAGTTGACTAAAATACACACGGAGGAGAAGGGAGACGTGCTGG
TTGCAGTGCAGGTGACAGACTCGAGTGGAAAGAGCCCGATTACTGCAGAG
ATGGTGTGGGCGTGGGTGCCTAAAGTGAGAAAAGAGAAGAAATGAAGTTG
AAGACGGTGGAGGTGGTGGGGCTCTTTGATGCCTCGACGGGCTCAATAGC
AAAAAAAAGGAAA
back to top

Coding sequence (CDS) from alignment at chr29:503885..505347+

>NO29G01600.1 ID=NO29G01600.1|Name=NO29G01600.1|organism=Nannochloropsis oceanica|type=CDS|length=513bp|location=Sequence derived from alignment at chr29:503885..505347+ (Nannochloropsis oceanica)
ATGGCGACCCGAAAGCTCAATCGACTGGCAACGCAGGTGGCTAAGCTCAC
GAGCCCGCTGCCGCCCGCTTACAAGCCGTGGGGATACACGTTTGCCTTTG
ACATGATGGTGAAACTGGCCGGAACGGCCCGGATCTGGGTGGAGGAAATG
TCGGACCAACGAGCCGTGGTGCATTTGAAGAACCGACGCCGGGTCCAGAA
TCACATCGGCGGCATTCACGCTTGTGGGATGGCCCTGGCCGCGGAGAGTG
CTACGGGGATTGTGGTAGGAATGAACGTCCCGGACTCAGCGTTGCCATTG
TGCAAGAGTATGAAGGTGAACTTTGTGCGGCGGTGCGAGGGGGACATCAA
GGCCGAGGCCCATCTGACCGAGGAGCAGTTGACTAAAATACACACGGAGG
AGAAGGGAGACGTGCTGGTTGCAGTGCAGGTGACAGACTCGAGTGGAAAG
AGCCCGATTACTGCAGAGATGGTGTGGGCGTGGGTGCCTAAAGTGAGAAA
AGAGAAGAAATGA
back to top
Synonyms
Publications