NO29G01550, NO29G01550 (gene) Nannochloropsis oceanica

Overview
NameNO29G01550
Unique NameNO29G01550
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3567
Alignment locationchr29:483402..486968 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr29genomechr29:483402..486968 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
[Close]
BLAST of NO29G01550 vs. NCBI_GenBank
Match: XP_005854226.1 (hypothetical protein NGA_0223401 [Nannochloropsis gaditana CCMP526] >XP_005855066.1 hypothetical protein NGA_0223402 [Nannochloropsis gaditana CCMP526] >EKU21289.1 hypothetical protein NGA_0223402 [Nannochloropsis gaditana CCMP526] >EKU22133.1 hypothetical protein NGA_0223401 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 215.7 bits (548), Expect = 2.000e-52
Identity = 113/218 (51.83%), Postives = 148/218 (67.89%), Query Frame = 0 
Query:   77 DADMNILKMVKAGTFDFFKDALPGML-------------DTVTKEEAGLIFENFKFMKTTEAWKAFEATGNADDEEAVSAAMIKSVQEMGKVMIAARPITKDADSVTAFTDEFVQNLKDNDPSTAGLFDAVKGGDRMAVNTLQQKFADKYMGGIDLDTFADSEWIERARSKFFANEDLLRLIDDEDVLDVLRNPELKLHKASEMGSADPSRLLSSLMG 282
            D D ++++ +KAGTFDFF+D+LPGML             +TVTK EA  IFE F FMKTT  WK F  TG   DE+A +AAM+++V+EMG  +I AR ITKDAD+V    ++F+ +LK ND S+  L  + K G   A+ TLQQKF D+Y+GGIDL+TF   +W++RAR  FFA+E+LLR + DE VL  LRNP L+  K SE   ADP+R+LSSL G
Sbjct:   77 DPDFDMIRRIKAGTFDFFRDSLPGMLEYVGGDGSEKDWEETVTKREARQIFEQFPFMKTTNVWKRFIETGEVADEDAAAAAMVEAVREMGATLIEARSITKDADTVVQHANDFLDDLKANDASSPELVASAKRGSPRAIATLQQKFVDQYLGGIDLETF---QWVDRARDNFFADENLLRAVGDESVLSNLRNPNLRPLKVSEYEEADPARILSSLTG 291
[Close]
BLAST of NO29G01550 vs. NCBI_GenBank
Match: EWM20647.1 (hypothetical protein Naga_100289g4 [Nannochloropsis gaditana])

HSP 1 Score: 193.0 bits (489), Expect = 1.400e-45
Identity = 99/180 (55.00%), Postives = 127/180 (70.56%), Query Frame = 0 
Query:  102 LDTVTKEEAGLIFENFKFMKTTEAWKAFEATGNADDEEAVSAAMIKSVQEMGKVMIAARPITKDADSVTAFTDEFVQNLKDNDPSTAGLFDAVKGGDRMAVNTLQQKFADKYMGGIDLDTFADSEWIERARSKFFANEDLLRLIDDEDVLDVLRNPELKLHKASEMGSADPSRLLSSLMG 282
            L TVTK EA  IFE F FMKTT  WK F  TG A DE+A +AAM+++V+EMG  +I AR ITKDAD+V    ++F+ +LK ND S+  L  + K G   A+ TLQQKF D+Y+GGIDL+TF + +W++RAR  FFA+E+LLR + DE VL  LRNP L+  K SE   ADP+R+LSSL G
Sbjct:   17 LRTVTKREARQIFEQFPFMKTTNVWKRFIETGEAADEDAAAAAMVEAVREMGATLIEARSITKDADTVVQHANDFLDDLKANDASSPELVASAKRGSPRAIATLQQKFVDQYLGGIDLETFQNPQWVDRARDNFFADENLLRAVGDESVLSNLRNPNLRPLKVSEYEEADPARILSSLTG 196
[Close]
BLAST of NO29G01550 vs. NCBI_GenBank
Match: EWM28446.1 (hypothetical protein Naga_100591g1 [Nannochloropsis gaditana])

HSP 1 Score: 167.9 bits (424), Expect = 4.700e-38
Identity = 93/186 (50.00%), Postives = 126/186 (67.74%), Query Frame = 0 
Query:    1 MSQRFSITLLLLAVVVQ----IMVQARDRRVNSLFNKIRQQDYAQASEAAAASG------KFNFEHRRMNTEEEAXXXXXXXXXXXDADMNILKMVKAGTFDFFKDALPGMLDTVTKEEAGLIFENFKFMKTTEAWKAFEATGNADDEEAVSAAMIKSVQEMGKVMIAARPITKDADSVTAFTDEF 177
            M Q  SI ++    +V     ++V  +DRR ++LF + R++    AS  A          K+ FE RR++ EE A           + +MN+++ +KAGTFDFF DALP ML++VTK+EAGLIFENFK MKTT+AWKAF+ +G+ +DEEAV++AMIKSVQEMG++M+ AR  TKDADSVTA TDEF
Sbjct:    1 MRQHVSILVIAYIFLVSMGSLVLVSGKDRRSDTLFGRTRREHGKDASNQAQEEDLENPPPKYTFERRRLSGEEAAKAEATRIDPTYEPEMNLIQRIKAGTFDFFTDALPEMLESVTKDEAGLIFENFKVMKTTKAWKAFQESGDTEDEEAVASAMIKSVQEMGQIMLGARYFTKDADSVTAVTDEF 186
[Close]
BLAST of NO29G01550 vs. NCBI_GenBank
Match: EWM28447.1 (hypothetical protein Naga_100627g1 [Nannochloropsis gaditana])

HSP 1 Score: 160.6 bits (405), Expect = 7.500e-36
Identity = 76/109 (69.72%), Postives = 92/109 (84.40%), Query Frame = 0 
Query:  180 LKDNDPSTAGLFDAVKGGDRMAVNTLQQKFADKYMGGIDLDTFADSEWIERARSKFFANEDLLRLIDDEDVLDVLRNPELKLHKASEMGSADPSRLLSSLMGTPVEFNG 289
            LK NDPS   LFDAV+ GD  AV TLQQ FAD+Y+GG+DLD F D+EWIE+AR++FFANEDLLRL+DD D+LD+LRNP+LKLHKASEMG+ADPSRLL+SLM +    +G
Sbjct:    3 LKANDPSAPRLFDAVREGDPRAVATLQQMFADRYLGGVDLDAFQDNEWIEKARARFFANEDLLRLVDDNDILDILRNPDLKLHKASEMGNADPSRLLNSLMESHARNHG 111
The following BLAST results are available for this feature:
BLAST of NO29G01550 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 4
Match NameE-valueIdentityDescription
XP_005854226.12.000e-5251.83hypothetical protein NGA_0223401 [Nannochloropsis ... [more]
EWM20647.11.400e-4555.00hypothetical protein Naga_100289g4 [Nannochloropsi... [more]
EWM28446.14.700e-3850.00hypothetical protein Naga_100591g1 [Nannochloropsi... [more]
EWM28447.17.500e-3669.72hypothetical protein Naga_100627g1 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL062nonsL062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR038ncniR038Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR079ngnoR079Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO29G01550.1NO29G01550.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|632768gene_8333Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO29G01550.1NO29G01550.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO29G01550 ID=NO29G01550|Name=NO29G01550|organism=Nannochloropsis oceanica|type=gene|length=3567bp
CGTTTACAGCGTATCGACGATTTCCGGATTATGGCGTCACGTCGTTTTTT
CCCCTATGTAGTGACCGAAGGATTATTTCCTCGGTAAAGCCAGTAGGAAT
ACGCGCGAGGAAATCCACCATGATGGCCTTTGCCTGTGTTGACGCGCGGG
ACACCCACTCTTGCTTGGATCATACGTTTCAAACTCTCAACCCTGAACCT
GTACATGACTGTTATCCACAGTAAAAACGACCCCATTCACTTCTTGTTAG
GAAGCAAAAAGTAATACAACAATGTCTCGCGATGCGTAGCATAAGGTGAT
TAAGGCACGAGGGGAGCAAGCAAAAGGACGCTGACACCCCCTTCCTTCGC
CTTCATAGTCGAGCTGTAGGCAAAGTACACTCATTGAACAATCCTCGCTC
CATTCTAAGGAGTTTCAAATGCTCTCTATCTCAATCTTCCCCCCATTTAC
ACGATAGAGGTCAATCCATTCACAGCAGAGGAACGTTCCCCCCTCCCCCT
CTCTTAATCATCTTCACCTGCCCGCCATGTCACAACGCTTCTCTATAACA
CTCCTCCTGCTCGCTGTAGTCGTTCAGATCATGGTACAAGCCAGGGATCG
CCGCGTTAATTCGCTATTTAACAAAATCCGTCAACAAGACTACGCCCAAG
CAAGTGAAGCCGCCGCAGCCTCGGGCAAGTTCAACTTTGAACATCGTCGT
ATGAACACGGAGGAGGAAGCCACAGCGGAGGCCACCAAGGCAGAGACTGA
CTTAGACGCGGACATGAATATCCTCAAgtgagtcaggtggcagggagagg
agcgaagaagggagagaagggagagaagaagcaggaagataattttgaga
gttgcctaggaaatacctttgcaagaatgagagagtggcctgttcgagga
agaaagtgtcctcgaagctttacggtatctcacgctctcgcatccatctg
tacgaccaacagGATGGTCAAGGCCGGCACCTTCGACTTCTTCAAGGACG
CACTCCCCGGCATGCTCGAgtaagctcccgtctaacaagagggacgagga
cgaacaggaggaatgggaaggaggagagcctgtatgtagttggtgccgtg
tgcatcgtattcctccattcaaagttcgaccattttatccttgccgtggc
acctcgtgataagagacccacatcttctgtccaccctccctccctctttc
ccttcagCACCGTCACCAAAGAGGAAGCTGGACTTATCTTCGAGAACTTT
AAGTTCATGAAGACGACCGAGGCATGGAAGGCCTTCGAGGCCACCGGTAA
TGCCGATGACGAGGAGGCAgtacgtttacctgactcgctatttctctctc
tgtgtcatatgtgcatgccttccttccctccctcccttcctcccttcctc
ctttcctcccttcctttcttcctcggttgcgttcttgtcttcatgtgtaa
ggatttgctgacgtggacaatacctgcagtgtcaaggaccataaaaaaac
tcgggaagctgatttccttccctgccgccttctcttccactggtcctccc
tctagGTCTCCGCCGCTATGATCAAGTCGGTGCAAGAGATGGGAAAAGTG
ATGATTGCCGCACGCCCCATCACTAAGGACGCGGACTCAGTCACGGCTTT
CACTGATGAATTCGTCCAGAATgtagggagaaagggagaagagggaggag
aggggacaaaggcgttcttgatggaaatggaaggagacccgctgtcgggc
acgtctcgttcaggccttctcaagccctccctccctccctccctctcctt
ttctcgcagCTGAAAGATAATGACCCCTCTACTGCCGGCCTGTTCGACGC
CGTCAAGGGCGGGGACCGCATGGCGGTCAACACACTGCAACAAAAGTTTG
CAGACAAGTATATGGGAGGAATTGACTTGGATACGTTCGCGgtaggtgag
gaggaagggaggcattcttctctcagtgccaatgccgcggcgtccccctt
catggcacggtaccctcacacccgttccataccctcaaaccccttcctac
ctccagGACAGCGAGTGGATTGAACGGGCCCGTTCGAAATTCTTCGCCAA
CGAGGACCTTCTCCGGCTCATCGACGATGAGGACGTCCTGGATGTACTCA
GAAATCCCGAGCTCAAGCTCCACAAGgtacgaccgcccccaccccctcct
ttcctctttctctcccttccctccttcctacctccctctttctctctctg
ctctcgttcccccttccatcaaattgtcaacatggacagaaacgtaagga
tggccgccctctttccctctttccctccctccctcccgcatttactctct
tcctctctcttccttttgtgcccctgaggattaaggccgtcttcttacgc
ctcccttccatccctcacttgcttcctcttcccccttccagGCCAGCGAG
ATGGGCAGCGCCGACCCCTCTCGTCTGCTGTCCTCCCTCATGGGCACCCC
CGTGGAATTTAACGGCAATGAGCACGAGGTGATGACAGGTGGAATGTGAA
GAAGAAATAGGATGAGGGAGAAATGGAGGAAGGGAAGGAAGGTGTGCTCC
TGGTTCGCCATCATGTGGTCTGAAATTTGAAGGAAGGAAGGAGGGAGGGA
GGGAGGGAGGATGCAAAAGATACATACACTACTCGAAGATTCCACGAATG
TCGTTGTGATATATGCAGGAGGAAAGAGAAGAGAGAGAATAAAAAGAGGA
AGGAAAAAAAAAGCACCAAACAAACCGAGAACAAAAGACTGAAAGAGAGG
GAAGGATGTTGCGGCGCGTACATATATACCGGAGATCAGGCACAGTTCAC
CAATCGGTCAGCCCGGTACAGCAATTGCACCGTCGGTGGGCGGGTCATGT
TCATCGAAACCATGGTAGGGTGCAAATTTAGCTTCTTAAATGCTTTGTCA
ACGTCCTCGTTCTCGCTGACACTTGCAGAAATCCCAAACTCGGCGAGCTC
ATCAGTAGCAAGAACAGCATCTCCTCCTTGGACACTGTGTGCGATAGGAA
TTGGAGTGTAATAGGATTGATACGAGATGATTGATGAAGGCTCAAAGGCG
GCATAGGTAAAGTAGTCCGAGCCACCTCCGATGGAAAGCACAGGTACCCC
GGGCTTGATAGACGAAACAAATCAGGTCCAAATACACACCTGACTAGGAC
TCGGGAGGAAGACAACAAGGCAAGACTGACAAGGAGTCAAAAGGACCACA
GTTTACTGATGATGACACGGTGCTGAGAACAACGCGGAGGGGCTATCGGC
ATGTTTGCTTGCTTGCTTATGGGACTTTGGCGCGGGCTGGTATATGTCTG
TGTGAGGGTGGGTAGGCAGATCGGAGGATACCTGGGTTCGTGCGATGAGT
TCAAGTCGATGGAGGGGGGTGCGACACAGGGGCTGAGGCCACAATAAACA
TAGACCCCGATATGCGGTACACGTCCTCATGAATGGTCCAGTGCACGGCT
CGAAAGGAAGGAAAAACCGTGCGTGAGGTTCACGAGGAATTTATACTCCG
GGGATCGAAAGCAACGG
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protein sequence of NO29G01550.1

>NO29G01550.1-protein ID=NO29G01550.1-protein|Name=NO29G01550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=299bp
MSQRFSITLLLLAVVVQIMVQARDRRVNSLFNKIRQQDYAQASEAAAASG
KFNFEHRRMNTEEEATAEATKAETDLDADMNILKMVKAGTFDFFKDALPG
MLDTVTKEEAGLIFENFKFMKTTEAWKAFEATGNADDEEAVSAAMIKSVQ
EMGKVMIAARPITKDADSVTAFTDEFVQNLKDNDPSTAGLFDAVKGGDRM
AVNTLQQKFADKYMGGIDLDTFADSEWIERARSKFFANEDLLRLIDDEDV
LDVLRNPELKLHKASEMGSADPSRLLSSLMGTPVEFNGNEHEVMTGGM*
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Synonyms
Publications