NO29G01550.1, NO29G01550.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO29G01550.1
Unique Name	NO29G01550.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2441
Alignment location	chr29:483402..486968 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr29	genome	chr29:483402..486968 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO29G01550.1 vs.
Match: XP_005854226.1 (hypothetical protein NGA_0223401 [Nannochloropsis gaditana CCMP526]; XP_005855066.1 hypothetical protein NGA_0223402 [Nannochloropsis gaditana CCMP526]; EKU21289.1 hypothetical protein NGA_0223402 [Nannochloropsis gaditana CCMP526]; EKU22133.1 hypothetical protein NGA_0223401 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 235.0 bits (598), Expect = 3.100e-58
Identity = 128/267 (47.94%), Postives = 175/267 (65.54%), Query Frame = 0

Query:   28 NSLFNKIRQQDYAQASEAAAASGKFNFEHRRMNTEEEATAEATKAETDLDADMNILKMVKAGTFDFFKDALPGMLD-------------TVTKEEAGLIFENFKFMKTTEAWKAFEATGNADDEEAVSAAMIKSVQEMGKVMIAARPITKDADSVTAFTDEFVQNLKDNDPSTAGLFDAVKGGDRMAVNTLQQKFADKYMGGIDLDTFADSEWIERARSKFFANEDLLRLIDDEDVLDVLRNPELKLHKASEMGSADPSRLLSSLMG 282
            +SLF+KI +Q   +  +++  S K +   RR +++      ATK+ T LD D ++++ +KAGTFDFF+D+LPGML+             TVTK EA  IFE F FMKTT  WK F  TG   DE+A +AAM+++V+EMG  +I AR ITKDAD+V    ++F+ +LK ND S+  L  + K G   A+ TLQQKF D+Y+GGIDL+TF   +W++RAR  FFA+E+LLR + DE VL  LRNP L+  K SE   ADP+R+LSSL G
Sbjct:   28 SSLFDKIHEQHPQKGDKSSKTSRKSSSGQRRASSQASTEEAATKSSTVLDPDFDMIRRIKAGTFDFFRDSLPGMLEYVGGDGSEKDWEETVTKREARQIFEQFPFMKTTNVWKRFIETGEVADEDAAAAAMVEAVREMGATLIEARSITKDADTVVQHANDFLDDLKANDASSPELVASAKRGSPRAIATLQQKFVDQYLGGIDLETF---QWVDRARDNFFADENLLRAVGDESVLSNLRNPNLRPLKVSEYEEADPARILSSLTG 291

The following BLAST results are available for this feature:

BLAST of NO29G01550.1 vs.

BLAST of NO29G01550.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
XP_005854226.1	3.100e-58	47.94	hypothetical protein NGA_0223401 [Nannochloropsis ...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO29G01550	NO29G01550	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO29G01550.1	NO29G01550.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO29G01550.1.cds1	NO29G01550.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO29G01550.1.cds2	NO29G01550.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO29G01550.1.cds3	NO29G01550.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO29G01550.1.cds4	NO29G01550.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO29G01550.1.cds5	NO29G01550.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO29G01550.1.cds6	NO29G01550.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO29G01550.1.cds7	NO29G01550.1.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr29:483402..486968-
coding sequence from alignment at chr29:483402..486968-

mRNA sequence

>NO29G01550.1 ID=NO29G01550.1|Name=NO29G01550.1|organism=Nannochloropsis oceanica|type=mRNA|length=2441bp
CGTTTACAGCGTATCGACGATTTCCGGATTATGGCGTCACGTCGTTTTTT
CCCCTATGTAGTGACCGAAGGATTATTTCCTCGGTAAAGCCAGTAGGAAT
ACGCGCGAGGAAATCCACCATGATGGCCTTTGCCTGTGTTGACGCGCGGG
ACACCCACTCTTGCTTGGATCATACGTTTCAAACTCTCAACCCTGAACCT
GTACATGACTGTTATCCACAGTAAAAACGACCCCATTCACTTCTTGTTAG
GAAGCAAAAAGTAATACAACAATGTCTCGCGATGCGTAGCATAAGGTGAT
TAAGGCACGAGGGGAGCAAGCAAAAGGACGCTGACACCCCCTTCCTTCGC
CTTCATAGTCGAGCTGTAGGCAAAGTACACTCATTGAACAATCCTCGCTC
CATTCTAAGGAGTTTCAAATGCTCTCTATCTCAATCTTCCCCCCATTTAC
ACGATAGAGGTCAATCCATTCACAGCAGAGGAACGTTCCCCCCTCCCCCT
CTCTTAATCATCTTCACCTGCCCGCCATGTCACAACGCTTCTCTATAACA
CTCCTCCTGCTCGCTGTAGTCGTTCAGATCATGGTACAAGCCAGGGATCG
CCGCGTTAATTCGCTATTTAACAAAATCCGTCAACAAGACTACGCCCAAG
CAAGTGAAGCCGCCGCAGCCTCGGGCAAGTTCAACTTTGAACATCGTCGT
ATGAACACGGAGGAGGAAGCCACAGCGGAGGCCACCAAGGCAGAGACTGA
CTTAGACGCGGACATGAATATCCTCAAGATGGTCAAGGCCGGCACCTTCG
ACTTCTTCAAGGACGCACTCCCCGGCATGCTCGACACCGTCACCAAAGAG
GAAGCTGGACTTATCTTCGAGAACTTTAAGTTCATGAAGACGACCGAGGC
ATGGAAGGCCTTCGAGGCCACCGGTAATGCCGATGACGAGGAGGCAGTCT
CCGCCGCTATGATCAAGTCGGTGCAAGAGATGGGAAAAGTGATGATTGCC
GCACGCCCCATCACTAAGGACGCGGACTCAGTCACGGCTTTCACTGATGA
ATTCGTCCAGAATCTGAAAGATAATGACCCCTCTACTGCCGGCCTGTTCG
ACGCCGTCAAGGGCGGGGACCGCATGGCGGTCAACACACTGCAACAAAAG
TTTGCAGACAAGTATATGGGAGGAATTGACTTGGATACGTTCGCGGACAG
CGAGTGGATTGAACGGGCCCGTTCGAAATTCTTCGCCAACGAGGACCTTC
TCCGGCTCATCGACGATGAGGACGTCCTGGATGTACTCAGAAATCCCGAG
CTCAAGCTCCACAAGGCCAGCGAGATGGGCAGCGCCGACCCCTCTCGTCT
GCTGTCCTCCCTCATGGGCACCCCCGTGGAATTTAACGGCAATGAGCACG
AGGTGATGACAGGTGGAATGTGAAGAAGAAATAGGATGAGGGAGAAATGG
AGGAAGGGAAGGAAGGTGTGCTCCTGGTTCGCCATCATGTGGTCTGAAAT
TTGAAGGAAGGAAGGAGGGAGGGAGGGAGGGAGGATGCAAAAGATACATA
CACTACTCGAAGATTCCACGAATGTCGTTGTGATATATGCAGGAGGAAAG
AGAAGAGAGAGAATAAAAAGAGGAAGGAAAAAAAAAGCACCAAACAAACC
GAGAACAAAAGACTGAAAGAGAGGGAAGGATGTTGCGGCGCGTACATATA
TACCGGAGATCAGGCACAGTTCACCAATCGGTCAGCCCGGTACAGCAATT
GCACCGTCGGTGGGCGGGTCATGTTCATCGAAACCATGGTAGGGTGCAAA
TTTAGCTTCTTAAATGCTTTGTCAACGTCCTCGTTCTCGCTGACACTTGC
AGAAATCCCAAACTCGGCGAGCTCATCAGTAGCAAGAACAGCATCTCCTC
CTTGGACACTGTGTGCGATAGGAATTGGAGTGTAATAGGATTGATACGAG
ATGATTGATGAAGGCTCAAAGGCGGCATAGGTAAAGTAGTCCGAGCCACC
TCCGATGGAAAGCACAGGTACCCCGGGCTTGATAGACGAAACAAATCAGG
TCCAAATACACACCTGACTAGGACTCGGGAGGAAGACAACAAGGCAAGAC
TGACAAGGAGTCAAAAGGACCACAGTTTACTGATGATGACACGGTGCTGA
GAACAACGCGGAGGGGCTATCGGCATGTTTGCTTGCTTGCTTATGGGACT
TTGGCGCGGGCTGGTATATGTCTGTGTGAGGGTGGGTAGGCAGATCGGAG
GATACCTGGGTTCGTGCGATGAGTTCAAGTCGATGGAGGGGGGTGCGACA
CAGGGGCTGAGGCCACAATAAACATAGACCCCGATATGCGGTACACGTCC
TCATGAATGGTCCAGTGCACGGCTCGAAAGGAAGGAAAAACCGTGCGTGA
GGTTCACGAGGAATTTATACTCCGGGGATCGAAAGCAACGG

protein sequence of NO29G01550.1

>NO29G01550.1-protein ID=NO29G01550.1-protein|Name=NO29G01550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=299bp
MSQRFSITLLLLAVVVQIMVQARDRRVNSLFNKIRQQDYAQASEAAAASG
KFNFEHRRMNTEEEATAEATKAETDLDADMNILKMVKAGTFDFFKDALPG
MLDTVTKEEAGLIFENFKFMKTTEAWKAFEATGNADDEEAVSAAMIKSVQ
EMGKVMIAARPITKDADSVTAFTDEFVQNLKDNDPSTAGLFDAVKGGDRM
AVNTLQQKFADKYMGGIDLDTFADSEWIERARSKFFANEDLLRLIDDEDV
LDVLRNPELKLHKASEMGSADPSRLLSSLMGTPVEFNGNEHEVMTGGM*

mRNA from alignment at chr29:483402..486968-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO29G01550.1 ID=NO29G01550.1|Name=NO29G01550.1|organism=Nannochloropsis oceanica|type=mRNA|length=3567bp|location=Sequence derived from alignment at chr29:483402..486968- (Nannochloropsis oceanica)
CGTTTACAGCGTATCGACGATTTCCGGATTATGGCGTCACGTCGTTTTTT
CCCCTATGTAGTGACCGAAGGATTATTTCCTCGGTAAAGCCAGTAGGAAT
ACGCGCGAGGAAATCCACCATGATGGCCTTTGCCTGTGTTGACGCGCGGG
ACACCCACTCTTGCTTGGATCATACGTTTCAAACTCTCAACCCTGAACCT
GTACATGACTGTTATCCACAGTAAAAACGACCCCATTCACTTCTTGTTAG
GAAGCAAAAAGTAATACAACAATGTCTCGCGATGCGTAGCATAAGGTGAT
TAAGGCACGAGGGGAGCAAGCAAAAGGACGCTGACACCCCCTTCCTTCGC
CTTCATAGTCGAGCTGTAGGCAAAGTACACTCATTGAACAATCCTCGCTC
CATTCTAAGGAGTTTCAAATGCTCTCTATCTCAATCTTCCCCCCATTTAC
ACGATAGAGGTCAATCCATTCACAGCAGAGGAACGTTCCCCCCTCCCCCT
CTCTTAATCATCTTCACCTGCCCGCCATGTCACAACGCTTCTCTATAACA
CTCCTCCTGCTCGCTGTAGTCGTTCAGATCATGGTACAAGCCAGGGATCG
CCGCGTTAATTCGCTATTTAACAAAATCCGTCAACAAGACTACGCCCAAG
CAAGTGAAGCCGCCGCAGCCTCGGGCAAGTTCAACTTTGAACATCGTCGT
ATGAACACGGAGGAGGAAGCCACAGCGGAGGCCACCAAGGCAGAGACTGA
CTTAGACGCGGACATGAATATCCTCAAGTGAGTCAGGTGGCAGGGAGAGG
AGCGAAGAAGGGAGAGAAGGGAGAGAAGAAGCAGGAAGATAATTTTGAGA
GTTGCCTAGGAAATACCTTTGCAAGAATGAGAGAGTGGCCTGTTCGAGGA
AGAAAGTGTCCTCGAAGCTTTACGGTATCTCACGCTCTCGCATCCATCTG
TACGACCAACAGGATGGTCAAGGCCGGCACCTTCGACTTCTTCAAGGACG
CACTCCCCGGCATGCTCGAGTAAGCTCCCGTCTAACAAGAGGGACGAGGA
CGAACAGGAGGAATGGGAAGGAGGAGAGCCTGTATGTAGTTGGTGCCGTG
TGCATCGTATTCCTCCATTCAAAGTTCGACCATTTTATCCTTGCCGTGGC
ACCTCGTGATAAGAGACCCACATCTTCTGTCCACCCTCCCTCCCTCTTTC
CCTTCAGCACCGTCACCAAAGAGGAAGCTGGACTTATCTTCGAGAACTTT
AAGTTCATGAAGACGACCGAGGCATGGAAGGCCTTCGAGGCCACCGGTAA
TGCCGATGACGAGGAGGCAGTACGTTTACCTGACTCGCTATTTCTCTCTC
TGTGTCATATGTGCATGCCTTCCTTCCCTCCCTCCCTTCCTCCCTTCCTC
CTTTCCTCCCTTCCTTTCTTCCTCGGTTGCGTTCTTGTCTTCATGTGTAA
GGATTTGCTGACGTGGACAATACCTGCAGTGTCAAGGACCATAAAAAAAC
TCGGGAAGCTGATTTCCTTCCCTGCCGCCTTCTCTTCCACTGGTCCTCCC
TCTAGGTCTCCGCCGCTATGATCAAGTCGGTGCAAGAGATGGGAAAAGTG
ATGATTGCCGCACGCCCCATCACTAAGGACGCGGACTCAGTCACGGCTTT
CACTGATGAATTCGTCCAGAATGTAGGGAGAAAGGGAGAAGAGGGAGGAG
AGGGGACAAAGGCGTTCTTGATGGAAATGGAAGGAGACCCGCTGTCGGGC
ACGTCTCGTTCAGGCCTTCTCAAGCCCTCCCTCCCTCCCTCCCTCTCCTT
TTCTCGCAGCTGAAAGATAATGACCCCTCTACTGCCGGCCTGTTCGACGC
CGTCAAGGGCGGGGACCGCATGGCGGTCAACACACTGCAACAAAAGTTTG
CAGACAAGTATATGGGAGGAATTGACTTGGATACGTTCGCGGTAGGTGAG
GAGGAAGGGAGGCATTCTTCTCTCAGTGCCAATGCCGCGGCGTCCCCCTT
CATGGCACGGTACCCTCACACCCGTTCCATACCCTCAAACCCCTTCCTAC
CTCCAGGACAGCGAGTGGATTGAACGGGCCCGTTCGAAATTCTTCGCCAA
CGAGGACCTTCTCCGGCTCATCGACGATGAGGACGTCCTGGATGTACTCA
GAAATCCCGAGCTCAAGCTCCACAAGGTACGACCGCCCCCACCCCCTCCT
TTCCTCTTTCTCTCCCTTCCCTCCTTCCTACCTCCCTCTTTCTCTCTCTG
CTCTCGTTCCCCCTTCCATCAAATTGTCAACATGGACAGAAACGTAAGGA
TGGCCGCCCTCTTTCCCTCTTTCCCTCCCTCCCTCCCGCATTTACTCTCT
TCCTCTCTCTTCCTTTTGTGCCCCTGAGGATTAAGGCCGTCTTCTTACGC
CTCCCTTCCATCCCTCACTTGCTTCCTCTTCCCCCTTCCAGGCCAGCGAG
ATGGGCAGCGCCGACCCCTCTCGTCTGCTGTCCTCCCTCATGGGCACCCC
CGTGGAATTTAACGGCAATGAGCACGAGGTGATGACAGGTGGAATGTGAA
GAAGAAATAGGATGAGGGAGAAATGGAGGAAGGGAAGGAAGGTGTGCTCC
TGGTTCGCCATCATGTGGTCTGAAATTTGAAGGAAGGAAGGAGGGAGGGA
GGGAGGGAGGATGCAAAAGATACATACACTACTCGAAGATTCCACGAATG
TCGTTGTGATATATGCAGGAGGAAAGAGAAGAGAGAGAATAAAAAGAGGA
AGGAAAAAAAAAGCACCAAACAAACCGAGAACAAAAGACTGAAAGAGAGG
GAAGGATGTTGCGGCGCGTACATATATACCGGAGATCAGGCACAGTTCAC
CAATCGGTCAGCCCGGTACAGCAATTGCACCGTCGGTGGGCGGGTCATGT
TCATCGAAACCATGGTAGGGTGCAAATTTAGCTTCTTAAATGCTTTGTCA
ACGTCCTCGTTCTCGCTGACACTTGCAGAAATCCCAAACTCGGCGAGCTC
ATCAGTAGCAAGAACAGCATCTCCTCCTTGGACACTGTGTGCGATAGGAA
TTGGAGTGTAATAGGATTGATACGAGATGATTGATGAAGGCTCAAAGGCG
GCATAGGTAAAGTAGTCCGAGCCACCTCCGATGGAAAGCACAGGTACCCC
GGGCTTGATAGACGAAACAAATCAGGTCCAAATACACACCTGACTAGGAC
TCGGGAGGAAGACAACAAGGCAAGACTGACAAGGAGTCAAAAGGACCACA
GTTTACTGATGATGACACGGTGCTGAGAACAACGCGGAGGGGCTATCGGC
ATGTTTGCTTGCTTGCTTATGGGACTTTGGCGCGGGCTGGTATATGTCTG
TGTGAGGGTGGGTAGGCAGATCGGAGGATACCTGGGTTCGTGCGATGAGT
TCAAGTCGATGGAGGGGGGTGCGACACAGGGGCTGAGGCCACAATAAACA
TAGACCCCGATATGCGGTACACGTCCTCATGAATGGTCCAGTGCACGGCT
CGAAAGGAAGGAAAAACCGTGCGTGAGGTTCACGAGGAATTTATACTCCG
GGGATCGAAAGCAACGG

Coding sequence (CDS) from alignment at chr29:483402..486968-

>NO29G01550.1 ID=NO29G01550.1|Name=NO29G01550.1|organism=Nannochloropsis oceanica|type=CDS|length=897bp|location=Sequence derived from alignment at chr29:483402..486968- (Nannochloropsis oceanica)
ATGTCACAACGCTTCTCTATAACACTCCTCCTGCTCGCTGTAGTCGTTCA
GATCATGGTACAAGCCAGGGATCGCCGCGTTAATTCGCTATTTAACAAAA
TCCGTCAACAAGACTACGCCCAAGCAAGTGAAGCCGCCGCAGCCTCGGGC
AAGTTCAACTTTGAACATCGTCGTATGAACACGGAGGAGGAAGCCACAGC
GGAGGCCACCAAGGCAGAGACTGACTTAGACGCGGACATGAATATCCTCA
AGATGGTCAAGGCCGGCACCTTCGACTTCTTCAAGGACGCACTCCCCGGC
ATGCTCGACACCGTCACCAAAGAGGAAGCTGGACTTATCTTCGAGAACTT
TAAGTTCATGAAGACGACCGAGGCATGGAAGGCCTTCGAGGCCACCGGTA
ATGCCGATGACGAGGAGGCAGTCTCCGCCGCTATGATCAAGTCGGTGCAA
GAGATGGGAAAAGTGATGATTGCCGCACGCCCCATCACTAAGGACGCGGA
CTCAGTCACGGCTTTCACTGATGAATTCGTCCAGAATCTGAAAGATAATG
ACCCCTCTACTGCCGGCCTGTTCGACGCCGTCAAGGGCGGGGACCGCATG
GCGGTCAACACACTGCAACAAAAGTTTGCAGACAAGTATATGGGAGGAAT
TGACTTGGATACGTTCGCGGACAGCGAGTGGATTGAACGGGCCCGTTCGA
AATTCTTCGCCAACGAGGACCTTCTCCGGCTCATCGACGATGAGGACGTC
CTGGATGTACTCAGAAATCCCGAGCTCAAGCTCCACAAGGCCAGCGAGAT
GGGCAGCGCCGACCCCTCTCGTCTGCTGTCCTCCCTCATGGGCACCCCCG
TGGAATTTAACGGCAATGAGCACGAGGTGATGACAGGTGGAATGTGA

Synonyms

Publications