NO29G01430, NO29G01430 (gene) Nannochloropsis oceanica

Overview
NameNO29G01430
Unique NameNO29G01430
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1918
Alignment locationchr29:455974..457891 +

Link to JBrowse

Properties
Property NameValue
DescriptionAnkyrin unc44
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr29genomechr29:455974..457891 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036770Ankyrin_rpt-contain_sf
IPR020683Ankyrin_rpt-contain_dom
IPR002110Ankyrin_rpt
Homology
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BLAST of NO29G01430 vs. NCBI_GenBank
Match: EWM21359.1 (ankyrin unc44 [Nannochloropsis gaditana])

HSP 1 Score: 221.1 bits (562), Expect = 5.300e-54
Identity = 252/346 (72.83%), Postives = 270/346 (78.03%), Query Frame = 0 
Query:    1 MANALIFAARDGDVTEVRWRLETDATLATYADSHGQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPCLRRAGXXXXXXXXXXXXXXXXXXXXXXDASCDVDSRDDQXXXXXXXXXXXXXXXXXXXXXAAGADPSIQGEQGWQAIDVAREKDRGECIALLEGEERAYVLSKARRLWRQAHLLHAALEQGCILEPKEVPTHLISRL-RPRGGGKSGSEAVRGKGGGSA-GLVLGR-----MRSNSGGSGGHAAGGKTSSPAFVEACQGLPRVATEEDDDYGAKNRSRDDASAAAQYVIEQMRFDVFIVMRDLLALSSSS 340
            MANALIFAARDGDVTEVRWRLE  ATLATYADSHGQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNP LRR GXXXXXXXXXXXXXXXXXXXXXX            XXXXXXXXXXXXXXXXXXXXX AGADPSI GEQGWQAIDVAREKDR ECI+LLEGEERAYVLSK RRLWR+ H L A LE+G ++   + P  L++ + +  G   S    +RG G GSA GLV G           G       GG  SS    EACQGLPRV TEEDD++G K+R+ D A AAA YV+EQMRFDVFI+MRDLLALSS+S
Sbjct:    1 MANALIFAARDGDVTEVRWRLEAKATLATYADSHGQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPSLRRTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGADPSIPGEQGWQAIDVAREKDRAECISLLEGEERAYVLSKIRRLWREEH-LQAGLERGRVVRRGKAPPFLVNGMSKGEGAANSNLVLLRGGGAGSARGLVHGEGGXXXXXXXVGSDRVRGDGGAASSSQ--EACQGLPRVETEEDDEHGLKSRAPDSAKAAAHYVVEQMRFDVFIIMRDLLALSSTS 343
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BLAST of NO29G01430 vs. NCBI_GenBank
Match: XP_005853813.1 (ankyrin repeat-containing protein, partial [Nannochloropsis gaditana CCMP526] >EKU22546.1 ankyrin repeat-containing protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 193.7 bits (491), Expect = 9.100e-46
Identity = 142/220 (64.55%), Postives = 160/220 (72.73%), Query Frame = 0 
Query:  127 CDVDSRDDQXXXXXXXXXXXXXXXXXXXXXAAGADPSIQGEQGWQAIDVAREKDRGECIALLEGEERAYVLSKARRLWRQAHLLHAALEQGCILEPKEVPTHLISRL-RPRGGGKSGSEAVRGKGGGSA-GLVLGR-----MRSNSGGSGGHAAGGKTSSPAFVEACQGLPRVATEEDDDYGAKNRSRDDASAAAQYVIEQMRFDVFIVMRDLLALSSSS 340
            CDVD RDDQXXXXXXXXXXXXXXXXXXXXXAAGADPSI GEQGWQAIDVAREKDR ECI+LLEGEERAYVLSK RRLWR+ H L A LE+G ++   + P  L++ + +  G   S    +RG G GSA GLV G           G       GG  SS    EACQGLPRV TEEDD++G K+R+ D A AAA YV+EQMRFDVFI+MRDLLALSS+S
Sbjct:   31 CDVDGRDDQXXXXXXXXXXXXXXXXXXXXXAAGADPSIPGEQGWQAIDVAREKDRAECISLLEGEERAYVLSKIRRLWREEH-LQAGLERGRVVRRGKAPPFLVNGMSKGEGAANSNLVLLRGGGAGSARGLVHGEGGXXXXXXXVGSDRVRGDGGAASSSQ--EACQGLPRVETEEDDEHGLKSRAPDSAKAAAHYVVEQMRFDVFIIMRDLLALSSTS 247
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BLAST of NO29G01430 vs. NCBI_GenBank
Match: XP_005853814.1 (ankyrin, partial [Nannochloropsis gaditana CCMP526] >EKU22547.1 ankyrin, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 73.9 bits (180), Expect = 1.000e-9
Identity = 35/37 (94.59%), Postives = 35/37 (94.59%), Query Frame = 0 
Query:    1 MANALIFAARDGDVTEVRWRLETDATLATYADSHGQT 38
            MANALIFAARDGDVTEVRWRLE  ATLATYADSHGQT
Sbjct:    1 MANALIFAARDGDVTEVRWRLEAKATLATYADSHGQT 37
The following BLAST results are available for this feature:
BLAST of NO29G01430 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM21359.15.300e-5472.83ankyrin unc44 [Nannochloropsis gaditana][more]
XP_005853813.19.100e-4664.55ankyrin repeat-containing protein, partial [Nannoc... [more]
XP_005853814.11.000e-994.59ankyrin, partial [Nannochloropsis gaditana CCMP526... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL062nonsL062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL061nonsL061Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR038ncniR038Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR081ngnoR081Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR079ngnoR079Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005276NSK005276Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO29G01430.1NO29G01430.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601571gene_8321Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100357g3gene9063Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO29G01430.1NO29G01430.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO29G01430 ID=NO29G01430|Name=NO29G01430|organism=Nannochloropsis oceanica|type=gene|length=1918bp
TGCCCCCTTTTTGATACCCAAACCGCTCATCGGCAACGAGGTGACAGAGG
GAAAGGTCCTGATAATGCATAGGATTGGGGTGGCACATGGTGTTGCGCTT
ACCCAAGCCTTGCCATTGCTGTTTCTTCGTTCGTATCCTTGCTGCAAAGG
GTCGTCGCTCAACGACGACGTCTGCAAAAGCAAGCAGTAACAGCCTGTCT
GCTGATGGCAAGATACATGTTACCCGCACTTAGTCAATTCACGTTATTTG
TTAGATATCCACTCTAATGCCTATGTACACACATATTATAGGCAGCGCAT
CGTGGGGCCTGGTTTTGTTGACTTGTTTTGAGAACGTGGCAGCGCAGGCA
AGGTCATCATCTTTCCGGCATCGTCTCTCCGCCCGTACTGCCTCCTGCCT
CCCCACCCTCATTTCCCGTAGAACACTCGAATAGGCCCGGTGTACACACC
ACTGTCCAACAGTGATATACTCTCGTAAATAGTGGGAACCAAAAACATGG
CGAACGCCCTAATCTTTGCGGCTCGCGATGGGGACGTGACGGAGGTTCGC
TGGCGCCTTGAGACCGACGCCACCCTTGCGACGTACGCAGACAGCCACGG
TCAGACAGCGCTCATGTGGGCGGCCGTTCAGGGCCACACAGAGGTGGCAC
GGTGCCTTCTGGACTTTGGGGCGGCTTTAGATGGGACAGAGTGGGAAATG
GGGCGCACGGCCTTGTATATGGCGGCTGGGCGGGGTCATGTATCGTTCGT
GGAGCTTCTTTTGGGCCGCGGGGCGAACCCGTGCTTGCGTCGGGCAGGCG
GCCGCACGCCCTTGGGCATCGCGGCTTACAATGGGCACACAGAAGTGGTG
AGGCTGCTGCTTAACGACGCAAGCTGTGATGTGGACAGCCGGGACGACCA
GGGCTGCACGCCTCTCTGGCAAGCCGCTCGGAACGGCCGCATCCAATCCT
TGCGCCTCCTCCTAGCCGCGGGGGCCGACCCGTCTATCCAGGGAGAGCAG
GGATGGCAAGCCATTGATGTAGCGCGTGAGAAGGACCGGGGCGAGTGTAT
TGCCTTGCTGGAGGGGGAGGAGCGAGCCTACGTCCTGTCTAAGGCCCGCC
GCTTATGGCGTCAAGCGCACCTTCTCCATGCCGCTCTTGAGCAAGGCTGC
ATCCTGGAGCCCAAGGAGGTGCCCACTCACCTGATAAGCCGTCTACGTCC
ACGAGGGGGAGGCAAGTCGGGCAGCGAAGCGGTACGAGGGAAGGGAGGTG
GCTCTGCAGGGTTGGTGCTTGGACGAATGAGGAGCAACAGCGGAGGCAGT
GGTGGTCATGCTGCTGGTGGGAAGACTTCTTCCCCGGCGTTCGTGGAGGC
ATGTCAGGGACTGCCCCGGGTGGCTACTGAGGAAGATGACGACTACGGGG
CGAAGAACCGTAGCCGCGATGATGCCAGTGCTGCTGCACAATACGTGATC
GAGCAAATGCGCTTCGACGTGTTTATCGTCATGCGCGACCTGCTCGCACT
GTCCTCTTCGTCATCCTAAACCCTCTTCTGACTGATTTGGTCATCGTCTA
TTGTGGTGAACGAAAGAGAAGAGAGAGGGGAAGAGTCTAAACAAATATGA
ACAAGAATCCTGTAATCGAAGCGACAGTGATATGGCACATGACTGGTGAC
CCGCGTGAGGATCACGACGGGAAAGAGAGGCGCGGGTCCTACGGTAGAGG
AAATATGAAGGAGATGCATCAAACGCATTGGACTCCATTACATACTTATA
CCGGTAGTAGACGACGACTGACAGAGAGTAGATGACAAAAGCGCGTAGAG
GAGGAGAATAGAAGCGAGGAACAAAAAAGGATCGTGGTCAATGAAAGTGA
AATGGAATGGGACGTTTCACGAAAGATTTGCAAATGTAAAGCGGAATTGA
AAAATTCATGCCGTGGCG
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protein sequence of NO29G01430.1

>NO29G01430.1-protein ID=NO29G01430.1-protein|Name=NO29G01430.1|organism=Nannochloropsis oceanica|type=polypeptide|length=341bp
MANALIFAARDGDVTEVRWRLETDATLATYADSHGQTALMWAAVQGHTEV
ARCLLDFGAALDGTEWEMGRTALYMAAGRGHVSFVELLLGRGANPCLRRA
GGRTPLGIAAYNGHTEVVRLLLNDASCDVDSRDDQGCTPLWQAARNGRIQ
SLRLLLAAGADPSIQGEQGWQAIDVAREKDRGECIALLEGEERAYVLSKA
RRLWRQAHLLHAALEQGCILEPKEVPTHLISRLRPRGGGKSGSEAVRGKG
GGSAGLVLGRMRSNSGGSGGHAAGGKTSSPAFVEACQGLPRVATEEDDDY
GAKNRSRDDASAAAQYVIEQMRFDVFIVMRDLLALSSSSS*
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Synonyms
Publications