NO29G01430.1, NO29G01430.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO29G01430.1
Unique NameNO29G01430.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1918
Alignment locationchr29:455974..457891 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr29genomechr29:455974..457891 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO29G01430.1 vs.
Match: EWM21359.1 (ankyrin unc44 [Nannochloropsis gaditana])

HSP 1 Score: 478.4 bits (1230), Expect = 1.800e-131
Identity = 254/348 (72.99%), Postives = 279/348 (80.17%), Query Frame = 0 
Query:    1 MANALIFAARDGDVTEVRWRLETDATLATYADSHGQTALMWAAVQGHTEVARCLLDFGAALDGTEWEMGRTALYMAAGRGHVSFVELLLGRGANPCLRRAGGRTPLGIAAYNGHTEVVRLLLNDASCDVDSRDDQGCTPLWQAARNGRIQSLRLLLAAGADPSIQGEQGWQAIDVAREKDRGECIALLEGEERAYVLSKARRLWRQAHLLHAALEQGCILEPKEVPTHLISRLRPRGGGKSGSEAVRGKGGGSAGLVLGRMRSNSGGSGGH---------AAGGKTSSPAFVEACQGLPRVATEEDDDYGAKNRSRDDASAAAQYVIEQMRFDVFIVMRDLLALSSSS 340
            MANALIFAARDGDVTEVRWRLE  ATLATYADSHGQTALMWAAVQGHTEVARCLLDFGAALDGTEWEMGRTALYMAAGRGHV+FVELLL RGANP LRR GGRTPLGIAAYNGH EVV+LLL+   CDVD RDDQGCTPLWQAARNGR Q+LRLLLAAGADPSI GEQGWQAIDVAREKDR ECI+LLEGEERAYVLSK RRLWR+ H L A LE+G ++   + P  L++ +  +G G + S  V  +GGG AG   G +    G  GG+           GG  SS    EACQGLPRV TEEDD++G K+R+ D A AAA YV+EQMRFDVFI+MRDLLALSS+S
Sbjct:    1 MANALIFAARDGDVTEVRWRLEAKATLATYADSHGQTALMWAAVQGHTEVARCLLDFGAALDGTEWEMGRTALYMAAGRGHVTFVELLLSRGANPSLRRTGGRTPLGIAAYNGHNEVVKLLLSHEGCDVDGRDDQGCTPLWQAARNGRTQALRLLLAAGADPSIPGEQGWQAIDVAREKDRAECISLLEGEERAYVLSKIRRLWREEH-LQAGLERGRVVRRGKAPPFLVNGM-SKGEGAANSNLVLLRGGG-AGSARGLVHGEGGNGGGNNKVGSDRVRGDGGAASSSQ--EACQGLPRVETEEDDEHGLKSRAPDSAKAAAHYVVEQMRFDVFIIMRDLLALSSTS 343
The following BLAST results are available for this feature:
BLAST of NO29G01430.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21359.11.800e-13172.99ankyrin unc44 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO29G01430NO29G01430Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO29G01430.1NO29G01430.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO29G01430.1.cds1NO29G01430.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO29G01430.1 ID=NO29G01430.1|Name=NO29G01430.1|organism=Nannochloropsis oceanica|type=mRNA|length=1918bp
TGCCCCCTTTTTGATACCCAAACCGCTCATCGGCAACGAGGTGACAGAGG
GAAAGGTCCTGATAATGCATAGGATTGGGGTGGCACATGGTGTTGCGCTT
ACCCAAGCCTTGCCATTGCTGTTTCTTCGTTCGTATCCTTGCTGCAAAGG
GTCGTCGCTCAACGACGACGTCTGCAAAAGCAAGCAGTAACAGCCTGTCT
GCTGATGGCAAGATACATGTTACCCGCACTTAGTCAATTCACGTTATTTG
TTAGATATCCACTCTAATGCCTATGTACACACATATTATAGGCAGCGCAT
CGTGGGGCCTGGTTTTGTTGACTTGTTTTGAGAACGTGGCAGCGCAGGCA
AGGTCATCATCTTTCCGGCATCGTCTCTCCGCCCGTACTGCCTCCTGCCT
CCCCACCCTCATTTCCCGTAGAACACTCGAATAGGCCCGGTGTACACACC
ACTGTCCAACAGTGATATACTCTCGTAAATAGTGGGAACCAAAAACATGG
CGAACGCCCTAATCTTTGCGGCTCGCGATGGGGACGTGACGGAGGTTCGC
TGGCGCCTTGAGACCGACGCCACCCTTGCGACGTACGCAGACAGCCACGG
TCAGACAGCGCTCATGTGGGCGGCCGTTCAGGGCCACACAGAGGTGGCAC
GGTGCCTTCTGGACTTTGGGGCGGCTTTAGATGGGACAGAGTGGGAAATG
GGGCGCACGGCCTTGTATATGGCGGCTGGGCGGGGTCATGTATCGTTCGT
GGAGCTTCTTTTGGGCCGCGGGGCGAACCCGTGCTTGCGTCGGGCAGGCG
GCCGCACGCCCTTGGGCATCGCGGCTTACAATGGGCACACAGAAGTGGTG
AGGCTGCTGCTTAACGACGCAAGCTGTGATGTGGACAGCCGGGACGACCA
GGGCTGCACGCCTCTCTGGCAAGCCGCTCGGAACGGCCGCATCCAATCCT
TGCGCCTCCTCCTAGCCGCGGGGGCCGACCCGTCTATCCAGGGAGAGCAG
GGATGGCAAGCCATTGATGTAGCGCGTGAGAAGGACCGGGGCGAGTGTAT
TGCCTTGCTGGAGGGGGAGGAGCGAGCCTACGTCCTGTCTAAGGCCCGCC
GCTTATGGCGTCAAGCGCACCTTCTCCATGCCGCTCTTGAGCAAGGCTGC
ATCCTGGAGCCCAAGGAGGTGCCCACTCACCTGATAAGCCGTCTACGTCC
ACGAGGGGGAGGCAAGTCGGGCAGCGAAGCGGTACGAGGGAAGGGAGGTG
GCTCTGCAGGGTTGGTGCTTGGACGAATGAGGAGCAACAGCGGAGGCAGT
GGTGGTCATGCTGCTGGTGGGAAGACTTCTTCCCCGGCGTTCGTGGAGGC
ATGTCAGGGACTGCCCCGGGTGGCTACTGAGGAAGATGACGACTACGGGG
CGAAGAACCGTAGCCGCGATGATGCCAGTGCTGCTGCACAATACGTGATC
GAGCAAATGCGCTTCGACGTGTTTATCGTCATGCGCGACCTGCTCGCACT
GTCCTCTTCGTCATCCTAAACCCTCTTCTGACTGATTTGGTCATCGTCTA
TTGTGGTGAACGAAAGAGAAGAGAGAGGGGAAGAGTCTAAACAAATATGA
ACAAGAATCCTGTAATCGAAGCGACAGTGATATGGCACATGACTGGTGAC
CCGCGTGAGGATCACGACGGGAAAGAGAGGCGCGGGTCCTACGGTAGAGG
AAATATGAAGGAGATGCATCAAACGCATTGGACTCCATTACATACTTATA
CCGGTAGTAGACGACGACTGACAGAGAGTAGATGACAAAAGCGCGTAGAG
GAGGAGAATAGAAGCGAGGAACAAAAAAGGATCGTGGTCAATGAAAGTGA
AATGGAATGGGACGTTTCACGAAAGATTTGCAAATGTAAAGCGGAATTGA
AAAATTCATGCCGTGGCG
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protein sequence of NO29G01430.1

>NO29G01430.1-protein ID=NO29G01430.1-protein|Name=NO29G01430.1|organism=Nannochloropsis oceanica|type=polypeptide|length=341bp
MANALIFAARDGDVTEVRWRLETDATLATYADSHGQTALMWAAVQGHTEV
ARCLLDFGAALDGTEWEMGRTALYMAAGRGHVSFVELLLGRGANPCLRRA
GGRTPLGIAAYNGHTEVVRLLLNDASCDVDSRDDQGCTPLWQAARNGRIQ
SLRLLLAAGADPSIQGEQGWQAIDVAREKDRGECIALLEGEERAYVLSKA
RRLWRQAHLLHAALEQGCILEPKEVPTHLISRLRPRGGGKSGSEAVRGKG
GGSAGLVLGRMRSNSGGSGGHAAGGKTSSPAFVEACQGLPRVATEEDDDY
GAKNRSRDDASAAAQYVIEQMRFDVFIVMRDLLALSSSSS*
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mRNA from alignment at chr29:455974..457891+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO29G01430.1 ID=NO29G01430.1|Name=NO29G01430.1|organism=Nannochloropsis oceanica|type=mRNA|length=1918bp|location=Sequence derived from alignment at chr29:455974..457891+ (Nannochloropsis oceanica)
TGCCCCCTTTTTGATACCCAAACCGCTCATCGGCAACGAGGTGACAGAGG
GAAAGGTCCTGATAATGCATAGGATTGGGGTGGCACATGGTGTTGCGCTT
ACCCAAGCCTTGCCATTGCTGTTTCTTCGTTCGTATCCTTGCTGCAAAGG
GTCGTCGCTCAACGACGACGTCTGCAAAAGCAAGCAGTAACAGCCTGTCT
GCTGATGGCAAGATACATGTTACCCGCACTTAGTCAATTCACGTTATTTG
TTAGATATCCACTCTAATGCCTATGTACACACATATTATAGGCAGCGCAT
CGTGGGGCCTGGTTTTGTTGACTTGTTTTGAGAACGTGGCAGCGCAGGCA
AGGTCATCATCTTTCCGGCATCGTCTCTCCGCCCGTACTGCCTCCTGCCT
CCCCACCCTCATTTCCCGTAGAACACTCGAATAGGCCCGGTGTACACACC
ACTGTCCAACAGTGATATACTCTCGTAAATAGTGGGAACCAAAAACATGG
CGAACGCCCTAATCTTTGCGGCTCGCGATGGGGACGTGACGGAGGTTCGC
TGGCGCCTTGAGACCGACGCCACCCTTGCGACGTACGCAGACAGCCACGG
TCAGACAGCGCTCATGTGGGCGGCCGTTCAGGGCCACACAGAGGTGGCAC
GGTGCCTTCTGGACTTTGGGGCGGCTTTAGATGGGACAGAGTGGGAAATG
GGGCGCACGGCCTTGTATATGGCGGCTGGGCGGGGTCATGTATCGTTCGT
GGAGCTTCTTTTGGGCCGCGGGGCGAACCCGTGCTTGCGTCGGGCAGGCG
GCCGCACGCCCTTGGGCATCGCGGCTTACAATGGGCACACAGAAGTGGTG
AGGCTGCTGCTTAACGACGCAAGCTGTGATGTGGACAGCCGGGACGACCA
GGGCTGCACGCCTCTCTGGCAAGCCGCTCGGAACGGCCGCATCCAATCCT
TGCGCCTCCTCCTAGCCGCGGGGGCCGACCCGTCTATCCAGGGAGAGCAG
GGATGGCAAGCCATTGATGTAGCGCGTGAGAAGGACCGGGGCGAGTGTAT
TGCCTTGCTGGAGGGGGAGGAGCGAGCCTACGTCCTGTCTAAGGCCCGCC
GCTTATGGCGTCAAGCGCACCTTCTCCATGCCGCTCTTGAGCAAGGCTGC
ATCCTGGAGCCCAAGGAGGTGCCCACTCACCTGATAAGCCGTCTACGTCC
ACGAGGGGGAGGCAAGTCGGGCAGCGAAGCGGTACGAGGGAAGGGAGGTG
GCTCTGCAGGGTTGGTGCTTGGACGAATGAGGAGCAACAGCGGAGGCAGT
GGTGGTCATGCTGCTGGTGGGAAGACTTCTTCCCCGGCGTTCGTGGAGGC
ATGTCAGGGACTGCCCCGGGTGGCTACTGAGGAAGATGACGACTACGGGG
CGAAGAACCGTAGCCGCGATGATGCCAGTGCTGCTGCACAATACGTGATC
GAGCAAATGCGCTTCGACGTGTTTATCGTCATGCGCGACCTGCTCGCACT
GTCCTCTTCGTCATCCTAAACCCTCTTCTGACTGATTTGGTCATCGTCTA
TTGTGGTGAACGAAAGAGAAGAGAGAGGGGAAGAGTCTAAACAAATATGA
ACAAGAATCCTGTAATCGAAGCGACAGTGATATGGCACATGACTGGTGAC
CCGCGTGAGGATCACGACGGGAAAGAGAGGCGCGGGTCCTACGGTAGAGG
AAATATGAAGGAGATGCATCAAACGCATTGGACTCCATTACATACTTATA
CCGGTAGTAGACGACGACTGACAGAGAGTAGATGACAAAAGCGCGTAGAG
GAGGAGAATAGAAGCGAGGAACAAAAAAGGATCGTGGTCAATGAAAGTGA
AATGGAATGGGACGTTTCACGAAAGATTTGCAAATGTAAAGCGGAATTGA
AAAATTCATGCCGTGGCG
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Coding sequence (CDS) from alignment at chr29:455974..457891+

>NO29G01430.1 ID=NO29G01430.1|Name=NO29G01430.1|organism=Nannochloropsis oceanica|type=CDS|length=1023bp|location=Sequence derived from alignment at chr29:455974..457891+ (Nannochloropsis oceanica)
ATGGCGAACGCCCTAATCTTTGCGGCTCGCGATGGGGACGTGACGGAGGT
TCGCTGGCGCCTTGAGACCGACGCCACCCTTGCGACGTACGCAGACAGCC
ACGGTCAGACAGCGCTCATGTGGGCGGCCGTTCAGGGCCACACAGAGGTG
GCACGGTGCCTTCTGGACTTTGGGGCGGCTTTAGATGGGACAGAGTGGGA
AATGGGGCGCACGGCCTTGTATATGGCGGCTGGGCGGGGTCATGTATCGT
TCGTGGAGCTTCTTTTGGGCCGCGGGGCGAACCCGTGCTTGCGTCGGGCA
GGCGGCCGCACGCCCTTGGGCATCGCGGCTTACAATGGGCACACAGAAGT
GGTGAGGCTGCTGCTTAACGACGCAAGCTGTGATGTGGACAGCCGGGACG
ACCAGGGCTGCACGCCTCTCTGGCAAGCCGCTCGGAACGGCCGCATCCAA
TCCTTGCGCCTCCTCCTAGCCGCGGGGGCCGACCCGTCTATCCAGGGAGA
GCAGGGATGGCAAGCCATTGATGTAGCGCGTGAGAAGGACCGGGGCGAGT
GTATTGCCTTGCTGGAGGGGGAGGAGCGAGCCTACGTCCTGTCTAAGGCC
CGCCGCTTATGGCGTCAAGCGCACCTTCTCCATGCCGCTCTTGAGCAAGG
CTGCATCCTGGAGCCCAAGGAGGTGCCCACTCACCTGATAAGCCGTCTAC
GTCCACGAGGGGGAGGCAAGTCGGGCAGCGAAGCGGTACGAGGGAAGGGA
GGTGGCTCTGCAGGGTTGGTGCTTGGACGAATGAGGAGCAACAGCGGAGG
CAGTGGTGGTCATGCTGCTGGTGGGAAGACTTCTTCCCCGGCGTTCGTGG
AGGCATGTCAGGGACTGCCCCGGGTGGCTACTGAGGAAGATGACGACTAC
GGGGCGAAGAACCGTAGCCGCGATGATGCCAGTGCTGCTGCACAATACGT
GATCGAGCAAATGCGCTTCGACGTGTTTATCGTCATGCGCGACCTGCTCG
CACTGTCCTCTTCGTCATCCTAA
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Synonyms
Publications