NO29G01280, NO29G01280 (gene) Nannochloropsis oceanica

Overview
NameNO29G01280
Unique NameNO29G01280
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length944
Alignment locationchr29:408522..409465 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr29genomechr29:408522..409465 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013057AA_transpt_TM
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
[Close]
BLAST of NO29G01280 vs. NCBI_GenBank
Match: CBJ28443.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 73.2 bits (178), Expect = 5.900e-10
Identity = 35/80 (43.75%), Postives = 53/80 (66.25%), Query Frame = 0 
Query:   19 ALRHFLVTLFLLIGGYRAAMSAPGISFIWSLCGSSMGFLLCLTLPCAFYLKIRHRKQHVLNKTSCHMVLVGSTLSILLCT 99
            A+RH   T+ ++      A+S PG+  +WS+CGSS+GF++C  LP  FYLKIR  KQ  + K    +V+V S+L+I++CT
Sbjct:  252 AVRHVGTTVAIMGFSLFCALSVPGVGVVWSICGSSVGFMICYLLPGVFYLKIRWHKQFNIRKAGAFLVVVVSSLAIVICT 331
The following BLAST results are available for this feature:
BLAST of NO29G01280 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
CBJ28443.15.900e-1043.75conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL061nonsL061Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR038ncniR038Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR081ngnoR081Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO29G01280.1NO29G01280.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|189386gene_8304Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO29G01280.1NO29G01280.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO29G01280 ID=NO29G01280|Name=NO29G01280|organism=Nannochloropsis oceanica|type=gene|length=944bp
ATGGATGATTATGAATTGAGCTCGGCATCGATCGAAAGGGCGGAGGCGCT
GCAGgtagggaaagaggaagggggaaaggagaagaaggagggatgacaag
agcaatagaggaaaatgacgtaacacacatttgttgatgcttcctcgccc
tctccctccgtcgctcccttcccagGCCCTCAGGCACTTTCTGGTGACGC
TCTTCCTCCTCATAGGCGGATATCGGGCCGCCATGTCCGCGCCCGGGATC
TCGgtaaggggggggtaagaccaaacggacagacaggagaagaagggggc
aaaccgggcttgattcgattgattggtttattgtcttgttcaatttaaat
tgatttcccccgatttggtcggtctcgcgtctctcacttttctctcatta
tcccggcacgacggcgacatgtgtgcagttgctcacccactcattcgccc
accttttatttatacaacgcgtgcgcttccgccgcgaacgaatccattaa
acagTTTATTTGGAGCCTGTGCGGCTCGAGTATGGGATTTCTGCTTTGCC
TGACCCTGCCGTGCGCCTTCTATCTCAAGgtacgaatgggaagtgggggg
gcagatcggaaggggtaaggggggtgcgagggagacgaggaggagaatga
gatagaagggccttgcctcctgccttctacctcgaggcatgggctaaatc
ggcggggggacggagcgaaaggagcacgagtcatcattttagcatgaggg
aggagagaacacttacaccatccatccatcctccttccctccctcctctc
ctccctcccaagATCCGGCATCGCAAGCAGCACGTGCTCAATAAAACCTC
CTGTCATATGGTGCTAGTGGGGAGCACCCTTAGCATTCTTCTGTGCACAT
CAGCGACCCTCCATTCCCTCTACCTCGCCTCTCGCTCCGAGTAA
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protein sequence of NO29G01280.1

>NO29G01280.1-protein ID=NO29G01280.1-protein|Name=NO29G01280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=113bp
MDDYELSSASIERAEALQALRHFLVTLFLLIGGYRAAMSAPGISFIWSLC
GSSMGFLLCLTLPCAFYLKIRHRKQHVLNKTSCHMVLVGSTLSILLCTSA
TLHSLYLASRSE*
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Synonyms
Publications