NO29G01280.1, NO29G01280.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO29G01280.1
Unique NameNO29G01280.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length339
Alignment locationchr29:408522..409465 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr29genomechr29:408522..409465 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO29G01280.1 vs.
Match: CBJ28443.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 73.2 bits (178), Expect = 5.900e-10
Identity = 35/80 (43.75%), Postives = 53/80 (66.25%), Query Frame = 0 
Query:   19 ALRHFLVTLFLLIGGYRAAMSAPGISFIWSLCGSSMGFLLCLTLPCAFYLKIRHRKQHVLNKTSCHMVLVGSTLSILLCT 99
            A+RH   T+ ++      A+S PG+  +WS+CGSS+GF++C  LP  FYLKIR  KQ  + K    +V+V S+L+I++CT
Sbjct:  252 AVRHVGTTVAIMGFSLFCALSVPGVGVVWSICGSSVGFMICYLLPGVFYLKIRWHKQFNIRKAGAFLVVVVSSLAIVICT 331
The following BLAST results are available for this feature:
BLAST of NO29G01280.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBJ28443.15.900e-1043.75conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO29G01280NO29G01280Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO29G01280.1NO29G01280.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO29G01280.1.cds1NO29G01280.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO29G01280.1.cds2NO29G01280.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO29G01280.1.cds3NO29G01280.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO29G01280.1.cds4NO29G01280.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO29G01280.1 ID=NO29G01280.1|Name=NO29G01280.1|organism=Nannochloropsis oceanica|type=mRNA|length=339bp
ATGGATGATTATGAATTGAGCTCGGCATCGATCGAAAGGGCGGAGGCGCT
GCAGGCCCTCAGGCACTTTCTGGTGACGCTCTTCCTCCTCATAGGCGGAT
ATCGGGCCGCCATGTCCGCGCCCGGGATCTCGTTTATTTGGAGCCTGTGC
GGCTCGAGTATGGGATTTCTGCTTTGCCTGACCCTGCCGTGCGCCTTCTA
TCTCAAGATCCGGCATCGCAAGCAGCACGTGCTCAATAAAACCTCCTGTC
ATATGGTGCTAGTGGGGAGCACCCTTAGCATTCTTCTGTGCACATCAGCG
ACCCTCCATTCCCTCTACCTCGCCTCTCGCTCCGAGTAA
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protein sequence of NO29G01280.1

>NO29G01280.1-protein ID=NO29G01280.1-protein|Name=NO29G01280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=113bp
MDDYELSSASIERAEALQALRHFLVTLFLLIGGYRAAMSAPGISFIWSLC
GSSMGFLLCLTLPCAFYLKIRHRKQHVLNKTSCHMVLVGSTLSILLCTSA
TLHSLYLASRSE*
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mRNA from alignment at chr29:408522..409465-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO29G01280.1 ID=NO29G01280.1|Name=NO29G01280.1|organism=Nannochloropsis oceanica|type=mRNA|length=944bp|location=Sequence derived from alignment at chr29:408522..409465- (Nannochloropsis oceanica)
ATGGATGATTATGAATTGAGCTCGGCATCGATCGAAAGGGCGGAGGCGCT
GCAGGTAGGGAAAGAGGAAGGGGGAAAGGAGAAGAAGGAGGGATGACAAG
AGCAATAGAGGAAAATGACGTAACACACATTTGTTGATGCTTCCTCGCCC
TCTCCCTCCGTCGCTCCCTTCCCAGGCCCTCAGGCACTTTCTGGTGACGC
TCTTCCTCCTCATAGGCGGATATCGGGCCGCCATGTCCGCGCCCGGGATC
TCGGTAAGGGGGGGGTAAGACCAAACGGACAGACAGGAGAAGAAGGGGGC
AAACCGGGCTTGATTCGATTGATTGGTTTATTGTCTTGTTCAATTTAAAT
TGATTTCCCCCGATTTGGTCGGTCTCGCGTCTCTCACTTTTCTCTCATTA
TCCCGGCACGACGGCGACATGTGTGCAGTTGCTCACCCACTCATTCGCCC
ACCTTTTATTTATACAACGCGTGCGCTTCCGCCGCGAACGAATCCATTAA
ACAGTTTATTTGGAGCCTGTGCGGCTCGAGTATGGGATTTCTGCTTTGCC
TGACCCTGCCGTGCGCCTTCTATCTCAAGGTACGAATGGGAAGTGGGGGG
GCAGATCGGAAGGGGTAAGGGGGGTGCGAGGGAGACGAGGAGGAGAATGA
GATAGAAGGGCCTTGCCTCCTGCCTTCTACCTCGAGGCATGGGCTAAATC
GGCGGGGGGACGGAGCGAAAGGAGCACGAGTCATCATTTTAGCATGAGGG
AGGAGAGAACACTTACACCATCCATCCATCCTCCTTCCCTCCCTCCTCTC
CTCCCTCCCAAGATCCGGCATCGCAAGCAGCACGTGCTCAATAAAACCTC
CTGTCATATGGTGCTAGTGGGGAGCACCCTTAGCATTCTTCTGTGCACAT
CAGCGACCCTCCATTCCCTCTACCTCGCCTCTCGCTCCGAGTAA
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Coding sequence (CDS) from alignment at chr29:408522..409465-

>NO29G01280.1 ID=NO29G01280.1|Name=NO29G01280.1|organism=Nannochloropsis oceanica|type=CDS|length=339bp|location=Sequence derived from alignment at chr29:408522..409465- (Nannochloropsis oceanica)
ATGGATGATTATGAATTGAGCTCGGCATCGATCGAAAGGGCGGAGGCGCT
GCAGGCCCTCAGGCACTTTCTGGTGACGCTCTTCCTCCTCATAGGCGGAT
ATCGGGCCGCCATGTCCGCGCCCGGGATCTCGTTTATTTGGAGCCTGTGC
GGCTCGAGTATGGGATTTCTGCTTTGCCTGACCCTGCCGTGCGCCTTCTA
TCTCAAGATCCGGCATCGCAAGCAGCACGTGCTCAATAAAACCTCCTGTC
ATATGGTGCTAGTGGGGAGCACCCTTAGCATTCTTCTGTGCACATCAGCG
ACCCTCCATTCCCTCTACCTCGCCTCTCGCTCCGAGTAA
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Synonyms
Publications