NO29G01200, NO29G01200 (gene) Nannochloropsis oceanica

Overview
NameNO29G01200
Unique NameNO29G01200
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2107
Alignment locationchr29:392557..394663 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr29genomechr29:392557..394663 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR029071Ubiquitin-rel_dom
IPR000626Ubiquitin-like
Homology
[Close]
BLAST of NO29G01200 vs. NCBI_GenBank
Match: EWM21355.1 (conserved unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 362.1 bits (928), Expect = 1.800e-96
Identity = 198/277 (71.48%), Postives = 206/277 (74.37%), Query Frame = 0 
Query:   26 VFGAAAPVNIVVTLRGKKYDLTASSVQDIQSQMEGKSGLKPTQQAILFKGKQLSSTEELLAAGVTEGDTLNIVPTKGDAPRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPEDAAKMFQGMDMGKVAKMYQAFIWKLVRSPIVARYLSSEEDMEMLRLKLKESFENVSQDPKVAAQMAPFLNDDFRAMMEDTQKFREEIQKVVDFYMKMPDPDVDGSAFSGLDMSMFEGLAKSPDEDASDDLD 303
            +FG AAPVN+VVTLRGKKYDL+A SVQDIQ+QMEGKSGLKP QQAILFKGKQL ++E L AAGV EGDTLNIVPTKGD PRA                                                             SPEDAAK+FQGMDMGKVAKMYQAFIWKLVRSPIVARYLSSEEDME LRLKLKESFENVSQDPKVAAQMAPFLNDDFRAMMEDT+KFREEIQKVVDFYMKMPDPD DGSAFSGLDMSMFEGLAKSPDEDASDDLD
Sbjct:   25 IFGTAAPVNVVVTLRGKKYDLSAESVQDIQAQMEGKSGLKPGQQAILFKGKQLGASESLSAAGVVEGDTLNIVPTKGDVPRA-PPPRPRASFSSASAEDEDLATPAGVSSPAAGAGPSTPDELLAMLNGMLGNSGLGGLAGASSPEDAAKVFQGMDMGKVAKMYQAFIWKLVRSPIVARYLSSEEDMEQLRLKLKESFENVSQDPKVAAQMAPFLNDDFRAMMEDTRKFREEIQKVVDFYMKMPDPDADGSAFSGLDMSMFEGLAKSPDEDASDDLD 300
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BLAST of NO29G01200 vs. NCBI_GenBank
Match: CBN78527.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 81.3 bits (199), Expect = 6.100e-12
Identity = 42/77 (54.55%), Postives = 57/77 (74.03%), Query Frame = 0 
Query:   26 VFGAAAPVNIVVTLRGKKYDL-TASSVQDIQSQMEGKSGLKPTQQAILFKGKQLSSTEELLAAGVTEGDTLNIVPTK 102
            V G A PV++ VTLRGKKYD+  A+SV+D+Q  +E ++GL   QQ++LFKG  L    EL  AGV++GDT+NIVP+K
Sbjct:   20 VLGGAGPVSVKVTLRGKKYDVQDATSVEDVQKSVEEQAGLAKEQQSVLFKGSLLKPELELEEAGVSDGDTVNIVPSK 96
[Close]
BLAST of NO29G01200 vs. NCBI_GenBank
Match: XP_002182253.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC46154.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 65.9 bits (159), Expect = 2.600e-7
Identity = 80/293 (27.30%), Postives = 115/293 (39.25%), Query Frame = 0 
Query:   29 AAAPV-NIVVTLRGKKYDLT-ASSVQDIQSQMEGKSG-LKPTQQAILFKGKQLSSTEELLAAGVTEGDTLNIVPTKGDAPRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPEDAAKMFQGMDMGKVAKMYQA--FIWKLVRSPIVARYLSSEEDMEMLRLKLKESFENVSQDPKVAAQMA--PFLNDDFRAMMEDTQKFREEIQKVVDFYMKMPD-----------------PDVDGSAFSG-LDMSMFEGLAKSPDED 297
            A+APV N+ VTLRGKKYD+T   +VQD+Q ++E  SG L P Q  +LF GK+L ST+ L   GV +G  LNIVP+   A +                                                                ++  K   G D GKV  M ++   + +++ SPI   Y+S          KL+ES + +  +P + + MA  P + D    ++ D + +RE +Q     Y  M                   PD  G+ F G LD S         DED
Sbjct:   21 ASAPVPNVQVTLRGKKYDVTDVRTVQDLQDRIEEVSGILAPQQGRVLFDGKRLESTDVLADVGVADGAQLNIVPSSKAAGKVKKTATTTESKTDSAAMMEDYLRQAGLDGDKL--------------------------------DELMKGMSGSD-GKVPSMEESLGMMNEMMNSPIFQEYMSDP-------AKLEESRQMILNNPMLKSMMAGMPGMED----ILNDPEAWREAMQAAASLYKNMDKNQLTQAMMGMGGMGGGMPDFGGNMFDGTLDNSAAAAALDELDED 269
[Close]
BLAST of NO29G01200 vs. NCBI_GenBank
Match: GAX23417.1 (hypothetical protein FisN_15Lh139 [Fistulifera solaris])

HSP 1 Score: 64.3 bits (155), Expect = 7.700e-7
Identity = 32/75 (42.67%), Postives = 55/75 (73.33%), Query Frame = 0 
Query:   26 VFGAAAPVNIVVTLRGKKYDLT-ASSVQDIQSQMEGKSGLKPTQQAILFKGKQLSSTEELLAAGVTEGDTLNIVP 100
            +FG  A +++ VT+RGKKYD++  ++V+D+Q Q++ +SG++P+Q  ILF GK+L   + L  AGV +G  L+++P
Sbjct:   14 LFGVEASIDVQVTVRGKKYDISGVTTVRDLQEQLK-ESGVEPSQHTILFGGKRLEDDDVLSDAGVEDGAQLSVIP 87
[Close]
BLAST of NO29G01200 vs. NCBI_GenBank
Match: GAX22966.1 (hypothetical protein FisN_15Hh139 [Fistulifera solaris])

HSP 1 Score: 64.3 bits (155), Expect = 7.700e-7
Identity = 32/75 (42.67%), Postives = 55/75 (73.33%), Query Frame = 0 
Query:   26 VFGAAAPVNIVVTLRGKKYDLT-ASSVQDIQSQMEGKSGLKPTQQAILFKGKQLSSTEELLAAGVTEGDTLNIVP 100
            +FG  A +++ VT+RGKKYD++  ++V+D+Q Q++ +SG++P+Q  ILF GK+L   + L  AGV +G  L+++P
Sbjct:   14 LFGVEASIDVQVTVRGKKYDISGVTTVKDLQEQLK-ESGVEPSQHTILFGGKRLEDDDVLSDAGVEDGAQLSVIP 87
The following BLAST results are available for this feature:
BLAST of NO29G01200 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 5
Match NameE-valueIdentityDescription
EWM21355.11.800e-9671.48conserved unknown protein [Nannochloropsis gaditan... [more]
CBN78527.16.100e-1254.55conserved unknown protein [Ectocarpus siliculosus][more]
XP_002182253.12.600e-727.30predicted protein [Phaeodactylum tricornutum CCAP ... [more]
GAX23417.17.700e-742.67hypothetical protein FisN_15Lh139 [Fistulifera sol... [more]
GAX22966.17.700e-742.67hypothetical protein FisN_15Hh139 [Fistulifera sol... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL061nonsL061Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR038ncniR038Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR081ngnoR081Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005244NSK005244Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO29G01200.1NO29G01200.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO29G01200.1NO29G01200.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO29G01200 ID=NO29G01200|Name=NO29G01200|organism=Nannochloropsis oceanica|type=gene|length=2107bp
ACAGGCACACAAGGATCATCACCTCCCTATTCAGCATCTAGCAGCAGCAA
GCAAAAGCAATCTCAAAACGATGGCGGCCAAGAAGAATATCACCACGACC
ACATTCCTGCTTGTCTTGACCCTCTTCTGCTATTGTTTTTCCTATGTGTT
TGGCGCTGCGgtacgttttcttcggggagctgttcgtctgtgaagatagg
aaccagggaaggggtcctcgtcctgcagttgctgtagagatggggatggt
gctcctttatcagtgactcggtgttcatttcctgttatcttcatccttat
gtactgttcgttgttcgttgttctgctacttgtagggcacgattcaatcc
gtgtccatgtgtgtaatcggaggcaatgcaagcgaaggtgttggtcccag
tacaatatgaggcgaagcatgattcactttgacctcgccctttcctcctt
ctttcatcaccttagGCCCCTGTCAACATTGTCGTCACCCTACGCGGCAA
GAAGTATGACCTGACTGCCAGCAGCGTGCAAGATATCCAGTCTCAAATGG
AGGGCAAAAGCGGGCTCAAGCCTACCCAGCAAGCCATCCTTTTCAAAGGC
AAGCAGCTCTCTTCCACCGAGGAGCTCCTGGCCGCCGGTGTCACGGAGGG
AGACACCCTCAACATAGTCCCCACCAAAGGTGATGCCCCCCGCGCCCCTC
CTCCCTCCCGTCCTCGCCCTCCCCTTCCTACGGACACGGACCTGTCCGAG
TCCGCCCCAGCTGCTCCTGCTGCCCCTGCTGCTTCTGCTGCTGCGGGCCC
GTCTACACCTGATGAGCTTCTGTCGATGCTCAATGGCATGCTTGGAAACA
GCGGTCTTGgtaagcgatttcctctttctccccccttgccgcctccttga
ctaacctcttcctcctccctcctttccccctcccacatcagGCGGGCTAG
CGGGCGCTGGGTCCCCCGAGGACGCCGCGAAGATGTTCCAGGGGATGGAC
ATGGGTAAGGTGGCGAAGATGTACCAAGCCTTCATCTGGAAGCTTGTCCG
TTCCCCCATTGTGGCGCGTTACCTTTCTTCTGAAGAGGACATGGAGATGC
TCCGATTGAAGCTGAAGGAGAGCTTCGAGAATGTGTCGCAGGACCCCAAG
GTGGCGGCCCAGATGGCTCCCTTCTTGAACGATGACTTCAGGGCCATGAT
GGAGGACACCCAGAAATTCAGAGAGgtagggagggagggaggaaggaagg
gagagagggaggaaaggagactcaaagcaatgaaatacctgtgttcctat
gacagaggcgcacaggcgcacacacatacgaatacaggcacacacgttct
tccgactttctgaccccacattttctccttctcttctttttcccttgcaa
ctttttttctactcccctacagGAAATTCAAAAAGTGGTGGATTTCTACA
TGAAGATGCCTGACCCGGACGTGGACGGCTCGGCTTTCAGTGGCTTGGAC
ATGTCAATGTTCGAAGGGCTGGCCAAGAGCCCCGATGAAGACGCGAGTGA
TGATCTGGATAATCTGGCGGATGATGATGATGAAGATGGAGGGGAACTTT
AGGTTTTCTAGAGAGAGGGAGAGAGGGAGGGTAGGAGGGGAGAAGAAGGA
GGAGCTGGAGGAGCAGGAGTAACCGGAGCAGGAGGATAATCAAGACAAAG
AAACAAAAAAGACATTTGTAAAGAATGCGATCGACTGGAATGAAAGGTAT
TTCTTTGTTGTATTTTCCATTCTGAAAATACCAAGGCAAAAAAAGAACGA
CGGCCTCAAGTCAAGGTTCAAAATCCCACTTTTTGGCAGAAGCTCAGAAA
GTTGTACTCGTCATCATTCGCCGCCCCACGCAACCCCCCTTGCCCTCTGC
CGCCTCGTTGCTCTGAATCGCCTCTGTTGCCTTGTCAGCACCCTTGCCCG
AAGCCCATCATACCTGTAGATAGCTTGCTAGAAGCCAGCATCCTGTACAG
GCTCTTTAGAATCCACGGACTATTAGTCTTCCTCAAGTCACATGTCCTCT
CTTCGAGACCCTCATTTTTTTTACAACCAGCATCACACTCTACATCTATC
GACACCG
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protein sequence of NO29G01200.1

>NO29G01200.1-protein ID=NO29G01200.1-protein|Name=NO29G01200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=316bp
MAAKKNITTTTFLLVLTLFCYCFSYVFGAAAPVNIVVTLRGKKYDLTASS
VQDIQSQMEGKSGLKPTQQAILFKGKQLSSTEELLAAGVTEGDTLNIVPT
KGDAPRAPPPSRPRPPLPTDTDLSESAPAAPAAPAASAAAGPSTPDELLS
MLNGMLGNSGLGGLAGAGSPEDAAKMFQGMDMGKVAKMYQAFIWKLVRSP
IVARYLSSEEDMEMLRLKLKESFENVSQDPKVAAQMAPFLNDDFRAMMED
TQKFREEIQKVVDFYMKMPDPDVDGSAFSGLDMSMFEGLAKSPDEDASDD
LDNLADDDDEDGGEL*
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Synonyms
Publications