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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr29 | genome | chr29:392557..394663 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO29G01200.1 vs.
Match: EWM21355.1 (conserved unknown protein [Nannochloropsis gaditana]) HSP 1 Score: 467.6 bits (1202), Expect = 3.000e-128 Identity = 259/320 (80.94%), Postives = 279/320 (87.19%), Query Frame = 0
Query: 3 AKKNITTTTFLLVLTLFCYCFSYVFGAAAPVNIVVTLRGKKYDLTASSVQDIQSQMEGKSGLKPTQQAILFKGKQLSSTEELLAAGVTEGDTLNIVPTKGDAPRAPPPSRPRPPLPT----DTDLSESAPAAPAAPAASAAAGPSTPDELLSMLNGMLGNSGLGGLAGAGSPEDAAKMFQGMDMGKVAKMYQAFIWKLVRSPIVARYLSSEEDMEMLRLKLKESFENVSQDPKVAAQMAPFLNDDFRAMMEDTQKFREEIQKVVDFYMKMPDPDVDGSAFSGLDMSMFEGLAKSPDEDASDDLDNLADDDDEDG---GEL 316
A + I T TFLLV+TL C C + +FG AAPVN+VVTLRGKKYDL+A SVQDIQ+QMEGKSGLKP QQAILFKGKQL ++E L AAGV EGDTLNIVPTKGD PRAPPP RPR + D DL+ PA ++PAA AGPSTPDELL+MLNGMLGNSGLGGLAGA SPEDAAK+FQGMDMGKVAKMYQAFIWKLVRSPIVARYLSSEEDME LRLKLKESFENVSQDPKVAAQMAPFLNDDFRAMMEDT+KFREEIQKVVDFYMKMPDPD DGSAFSGLDMSMFEGLAKSPDEDASDDLDNL D+D+++G GEL
Sbjct: 2 AFRKIVTATFLLVVTLLCCCLTNIFGTAAPVNVVVTLRGKKYDLSAESVQDIQAQMEGKSGLKPGQQAILFKGKQLGASESLSAAGVVEGDTLNIVPTKGDVPRAPPP-RPRASFSSASAEDEDLA--TPAGVSSPAAG--AGPSTPDELLAMLNGMLGNSGLGGLAGASSPEDAAKVFQGMDMGKVAKMYQAFIWKLVRSPIVARYLSSEEDMEQLRLKLKESFENVSQDPKVAAQMAPFLNDDFRAMMEDTRKFREEIQKVVDFYMKMPDPDADGSAFSGLDMSMFEGLAKSPDEDASDDLDNLGDEDEDEGDGEGEL 316
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO29G01200.1 ID=NO29G01200.1|Name=NO29G01200.1|organism=Nannochloropsis oceanica|type=mRNA|length=1523bp
ACAGGCACACAAGGATCATCACCTCCCTATTCAGCATCTAGCAGCAGCAA
GCAAAAGCAATCTCAAAACGATGGCGGCCAAGAAGAATATCACCACGACC
ACATTCCTGCTTGTCTTGACCCTCTTCTGCTATTGTTTTTCCTATGTGTT
TGGCGCTGCGGCCCCTGTCAACATTGTCGTCACCCTACGCGGCAAGAAGT
ATGACCTGACTGCCAGCAGCGTGCAAGATATCCAGTCTCAAATGGAGGGC
AAAAGCGGGCTCAAGCCTACCCAGCAAGCCATCCTTTTCAAAGGCAAGCA
GCTCTCTTCCACCGAGGAGCTCCTGGCCGCCGGTGTCACGGAGGGAGACA
CCCTCAACATAGTCCCCACCAAAGGTGATGCCCCCCGCGCCCCTCCTCCC
TCCCGTCCTCGCCCTCCCCTTCCTACGGACACGGACCTGTCCGAGTCCGC
CCCAGCTGCTCCTGCTGCCCCTGCTGCTTCTGCTGCTGCGGGCCCGTCTA
CACCTGATGAGCTTCTGTCGATGCTCAATGGCATGCTTGGAAACAGCGGT
CTTGGCGGGCTAGCGGGCGCTGGGTCCCCCGAGGACGCCGCGAAGATGTT
CCAGGGGATGGACATGGGTAAGGTGGCGAAGATGTACCAAGCCTTCATCT
GGAAGCTTGTCCGTTCCCCCATTGTGGCGCGTTACCTTTCTTCTGAAGAG
GACATGGAGATGCTCCGATTGAAGCTGAAGGAGAGCTTCGAGAATGTGTC
GCAGGACCCCAAGGTGGCGGCCCAGATGGCTCCCTTCTTGAACGATGACT
TCAGGGCCATGATGGAGGACACCCAGAAATTCAGAGAGGAAATTCAAAAA
GTGGTGGATTTCTACATGAAGATGCCTGACCCGGACGTGGACGGCTCGGC
TTTCAGTGGCTTGGACATGTCAATGTTCGAAGGGCTGGCCAAGAGCCCCG
ATGAAGACGCGAGTGATGATCTGGATAATCTGGCGGATGATGATGATGAA
GATGGAGGGGAACTTTAGGTTTTCTAGAGAGAGGGAGAGAGGGAGGGTAG
GAGGGGAGAAGAAGGAGGAGCTGGAGGAGCAGGAGTAACCGGAGCAGGAG
GATAATCAAGACAAAGAAACAAAAAAGACATTTGTAAAGAATGCGATCGA
CTGGAATGAAAGGTATTTCTTTGTTGTATTTTCCATTCTGAAAATACCAA
GGCAAAAAAAGAACGACGGCCTCAAGTCAAGGTTCAAAATCCCACTTTTT
GGCAGAAGCTCAGAAAGTTGTACTCGTCATCATTCGCCGCCCCACGCAAC
CCCCCTTGCCCTCTGCCGCCTCGTTGCTCTGAATCGCCTCTGTTGCCTTG
TCAGCACCCTTGCCCGAAGCCCATCATACCTGTAGATAGCTTGCTAGAAG
CCAGCATCCTGTACAGGCTCTTTAGAATCCACGGACTATTAGTCTTCCTC
AAGTCACATGTCCTCTCTTCGAGACCCTCATTTTTTTTACAACCAGCATC
ACACTCTACATCTATCGACACCG back to topprotein sequence of NO29G01200.1 >NO29G01200.1-protein ID=NO29G01200.1-protein|Name=NO29G01200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=316bp
MAAKKNITTTTFLLVLTLFCYCFSYVFGAAAPVNIVVTLRGKKYDLTASS
VQDIQSQMEGKSGLKPTQQAILFKGKQLSSTEELLAAGVTEGDTLNIVPT
KGDAPRAPPPSRPRPPLPTDTDLSESAPAAPAAPAASAAAGPSTPDELLS
MLNGMLGNSGLGGLAGAGSPEDAAKMFQGMDMGKVAKMYQAFIWKLVRSP
IVARYLSSEEDMEMLRLKLKESFENVSQDPKVAAQMAPFLNDDFRAMMED
TQKFREEIQKVVDFYMKMPDPDVDGSAFSGLDMSMFEGLAKSPDEDASDD
LDNLADDDDEDGGEL* back to topmRNA from alignment at chr29:392557..394663- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO29G01200.1 ID=NO29G01200.1|Name=NO29G01200.1|organism=Nannochloropsis oceanica|type=mRNA|length=2107bp|location=Sequence derived from alignment at chr29:392557..394663- (Nannochloropsis oceanica)
ACAGGCACACAAGGATCATCACCTCCCTATTCAGCATCTAGCAGCAGCAA
GCAAAAGCAATCTCAAAACGATGGCGGCCAAGAAGAATATCACCACGACC
ACATTCCTGCTTGTCTTGACCCTCTTCTGCTATTGTTTTTCCTATGTGTT
TGGCGCTGCGGTACGTTTTCTTCGGGGAGCTGTTCGTCTGTGAAGATAGG
AACCAGGGAAGGGGTCCTCGTCCTGCAGTTGCTGTAGAGATGGGGATGGT
GCTCCTTTATCAGTGACTCGGTGTTCATTTCCTGTTATCTTCATCCTTAT
GTACTGTTCGTTGTTCGTTGTTCTGCTACTTGTAGGGCACGATTCAATCC
GTGTCCATGTGTGTAATCGGAGGCAATGCAAGCGAAGGTGTTGGTCCCAG
TACAATATGAGGCGAAGCATGATTCACTTTGACCTCGCCCTTTCCTCCTT
CTTTCATCACCTTAGGCCCCTGTCAACATTGTCGTCACCCTACGCGGCAA
GAAGTATGACCTGACTGCCAGCAGCGTGCAAGATATCCAGTCTCAAATGG
AGGGCAAAAGCGGGCTCAAGCCTACCCAGCAAGCCATCCTTTTCAAAGGC
AAGCAGCTCTCTTCCACCGAGGAGCTCCTGGCCGCCGGTGTCACGGAGGG
AGACACCCTCAACATAGTCCCCACCAAAGGTGATGCCCCCCGCGCCCCTC
CTCCCTCCCGTCCTCGCCCTCCCCTTCCTACGGACACGGACCTGTCCGAG
TCCGCCCCAGCTGCTCCTGCTGCCCCTGCTGCTTCTGCTGCTGCGGGCCC
GTCTACACCTGATGAGCTTCTGTCGATGCTCAATGGCATGCTTGGAAACA
GCGGTCTTGGTAAGCGATTTCCTCTTTCTCCCCCCTTGCCGCCTCCTTGA
CTAACCTCTTCCTCCTCCCTCCTTTCCCCCTCCCACATCAGGCGGGCTAG
CGGGCGCTGGGTCCCCCGAGGACGCCGCGAAGATGTTCCAGGGGATGGAC
ATGGGTAAGGTGGCGAAGATGTACCAAGCCTTCATCTGGAAGCTTGTCCG
TTCCCCCATTGTGGCGCGTTACCTTTCTTCTGAAGAGGACATGGAGATGC
TCCGATTGAAGCTGAAGGAGAGCTTCGAGAATGTGTCGCAGGACCCCAAG
GTGGCGGCCCAGATGGCTCCCTTCTTGAACGATGACTTCAGGGCCATGAT
GGAGGACACCCAGAAATTCAGAGAGGTAGGGAGGGAGGGAGGAAGGAAGG
GAGAGAGGGAGGAAAGGAGACTCAAAGCAATGAAATACCTGTGTTCCTAT
GACAGAGGCGCACAGGCGCACACACATACGAATACAGGCACACACGTTCT
TCCGACTTTCTGACCCCACATTTTCTCCTTCTCTTCTTTTTCCCTTGCAA
CTTTTTTTCTACTCCCCTACAGGAAATTCAAAAAGTGGTGGATTTCTACA
TGAAGATGCCTGACCCGGACGTGGACGGCTCGGCTTTCAGTGGCTTGGAC
ATGTCAATGTTCGAAGGGCTGGCCAAGAGCCCCGATGAAGACGCGAGTGA
TGATCTGGATAATCTGGCGGATGATGATGATGAAGATGGAGGGGAACTTT
AGGTTTTCTAGAGAGAGGGAGAGAGGGAGGGTAGGAGGGGAGAAGAAGGA
GGAGCTGGAGGAGCAGGAGTAACCGGAGCAGGAGGATAATCAAGACAAAG
AAACAAAAAAGACATTTGTAAAGAATGCGATCGACTGGAATGAAAGGTAT
TTCTTTGTTGTATTTTCCATTCTGAAAATACCAAGGCAAAAAAAGAACGA
CGGCCTCAAGTCAAGGTTCAAAATCCCACTTTTTGGCAGAAGCTCAGAAA
GTTGTACTCGTCATCATTCGCCGCCCCACGCAACCCCCCTTGCCCTCTGC
CGCCTCGTTGCTCTGAATCGCCTCTGTTGCCTTGTCAGCACCCTTGCCCG
AAGCCCATCATACCTGTAGATAGCTTGCTAGAAGCCAGCATCCTGTACAG
GCTCTTTAGAATCCACGGACTATTAGTCTTCCTCAAGTCACATGTCCTCT
CTTCGAGACCCTCATTTTTTTTACAACCAGCATCACACTCTACATCTATC
GACACCG back to topCoding sequence (CDS) from alignment at chr29:392557..394663- >NO29G01200.1 ID=NO29G01200.1|Name=NO29G01200.1|organism=Nannochloropsis oceanica|type=CDS|length=948bp|location=Sequence derived from alignment at chr29:392557..394663- (Nannochloropsis oceanica)
ATGGCGGCCAAGAAGAATATCACCACGACCACATTCCTGCTTGTCTTGAC
CCTCTTCTGCTATTGTTTTTCCTATGTGTTTGGCGCTGCGGCCCCTGTCA
ACATTGTCGTCACCCTACGCGGCAAGAAGTATGACCTGACTGCCAGCAGC
GTGCAAGATATCCAGTCTCAAATGGAGGGCAAAAGCGGGCTCAAGCCTAC
CCAGCAAGCCATCCTTTTCAAAGGCAAGCAGCTCTCTTCCACCGAGGAGC
TCCTGGCCGCCGGTGTCACGGAGGGAGACACCCTCAACATAGTCCCCACC
AAAGGTGATGCCCCCCGCGCCCCTCCTCCCTCCCGTCCTCGCCCTCCCCT
TCCTACGGACACGGACCTGTCCGAGTCCGCCCCAGCTGCTCCTGCTGCCC
CTGCTGCTTCTGCTGCTGCGGGCCCGTCTACACCTGATGAGCTTCTGTCG
ATGCTCAATGGCATGCTTGGAAACAGCGGTCTTGGCGGGCTAGCGGGCGC
TGGGTCCCCCGAGGACGCCGCGAAGATGTTCCAGGGGATGGACATGGGTA
AGGTGGCGAAGATGTACCAAGCCTTCATCTGGAAGCTTGTCCGTTCCCCC
ATTGTGGCGCGTTACCTTTCTTCTGAAGAGGACATGGAGATGCTCCGATT
GAAGCTGAAGGAGAGCTTCGAGAATGTGTCGCAGGACCCCAAGGTGGCGG
CCCAGATGGCTCCCTTCTTGAACGATGACTTCAGGGCCATGATGGAGGAC
ACCCAGAAATTCAGAGAGGAAATTCAAAAAGTGGTGGATTTCTACATGAA
GATGCCTGACCCGGACGTGGACGGCTCGGCTTTCAGTGGCTTGGACATGT
CAATGTTCGAAGGGCTGGCCAAGAGCCCCGATGAAGACGCGAGTGATGAT
CTGGATAATCTGGCGGATGATGATGATGAAGATGGAGGGGAACTTTAG back to top
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