NO29G01200.1, NO29G01200.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO29G01200.1
Unique NameNO29G01200.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1523
Alignment locationchr29:392557..394663 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr29genomechr29:392557..394663 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO29G01200.1 vs.
Match: EWM21355.1 (conserved unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 467.6 bits (1202), Expect = 3.000e-128
Identity = 259/320 (80.94%), Postives = 279/320 (87.19%), Query Frame = 0 
Query:    3 AKKNITTTTFLLVLTLFCYCFSYVFGAAAPVNIVVTLRGKKYDLTASSVQDIQSQMEGKSGLKPTQQAILFKGKQLSSTEELLAAGVTEGDTLNIVPTKGDAPRAPPPSRPRPPLPT----DTDLSESAPAAPAAPAASAAAGPSTPDELLSMLNGMLGNSGLGGLAGAGSPEDAAKMFQGMDMGKVAKMYQAFIWKLVRSPIVARYLSSEEDMEMLRLKLKESFENVSQDPKVAAQMAPFLNDDFRAMMEDTQKFREEIQKVVDFYMKMPDPDVDGSAFSGLDMSMFEGLAKSPDEDASDDLDNLADDDDEDG---GEL 316
            A + I T TFLLV+TL C C + +FG AAPVN+VVTLRGKKYDL+A SVQDIQ+QMEGKSGLKP QQAILFKGKQL ++E L AAGV EGDTLNIVPTKGD PRAPPP RPR    +    D DL+   PA  ++PAA   AGPSTPDELL+MLNGMLGNSGLGGLAGA SPEDAAK+FQGMDMGKVAKMYQAFIWKLVRSPIVARYLSSEEDME LRLKLKESFENVSQDPKVAAQMAPFLNDDFRAMMEDT+KFREEIQKVVDFYMKMPDPD DGSAFSGLDMSMFEGLAKSPDEDASDDLDNL D+D+++G   GEL
Sbjct:    2 AFRKIVTATFLLVVTLLCCCLTNIFGTAAPVNVVVTLRGKKYDLSAESVQDIQAQMEGKSGLKPGQQAILFKGKQLGASESLSAAGVVEGDTLNIVPTKGDVPRAPPP-RPRASFSSASAEDEDLA--TPAGVSSPAAG--AGPSTPDELLAMLNGMLGNSGLGGLAGASSPEDAAKVFQGMDMGKVAKMYQAFIWKLVRSPIVARYLSSEEDMEQLRLKLKESFENVSQDPKVAAQMAPFLNDDFRAMMEDTRKFREEIQKVVDFYMKMPDPDADGSAFSGLDMSMFEGLAKSPDEDASDDLDNLGDEDEDEGDGEGEL 316
The following BLAST results are available for this feature:
BLAST of NO29G01200.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
200400600800100012001400Expect = 3.00e-128 / Id = 80.94SequenceEWM21355.1
Match NameE-valueIdentityDescription
EWM21355.13.000e-12880.94conserved unknown protein [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO29G01200NO29G01200Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO29G01200.1NO29G01200.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO29G01200.1.cds1NO29G01200.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO29G01200.1.cds2NO29G01200.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO29G01200.1.cds3NO29G01200.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO29G01200.1.cds4NO29G01200.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO29G01200.1 ID=NO29G01200.1|Name=NO29G01200.1|organism=Nannochloropsis oceanica|type=mRNA|length=1523bp
ACAGGCACACAAGGATCATCACCTCCCTATTCAGCATCTAGCAGCAGCAA
GCAAAAGCAATCTCAAAACGATGGCGGCCAAGAAGAATATCACCACGACC
ACATTCCTGCTTGTCTTGACCCTCTTCTGCTATTGTTTTTCCTATGTGTT
TGGCGCTGCGGCCCCTGTCAACATTGTCGTCACCCTACGCGGCAAGAAGT
ATGACCTGACTGCCAGCAGCGTGCAAGATATCCAGTCTCAAATGGAGGGC
AAAAGCGGGCTCAAGCCTACCCAGCAAGCCATCCTTTTCAAAGGCAAGCA
GCTCTCTTCCACCGAGGAGCTCCTGGCCGCCGGTGTCACGGAGGGAGACA
CCCTCAACATAGTCCCCACCAAAGGTGATGCCCCCCGCGCCCCTCCTCCC
TCCCGTCCTCGCCCTCCCCTTCCTACGGACACGGACCTGTCCGAGTCCGC
CCCAGCTGCTCCTGCTGCCCCTGCTGCTTCTGCTGCTGCGGGCCCGTCTA
CACCTGATGAGCTTCTGTCGATGCTCAATGGCATGCTTGGAAACAGCGGT
CTTGGCGGGCTAGCGGGCGCTGGGTCCCCCGAGGACGCCGCGAAGATGTT
CCAGGGGATGGACATGGGTAAGGTGGCGAAGATGTACCAAGCCTTCATCT
GGAAGCTTGTCCGTTCCCCCATTGTGGCGCGTTACCTTTCTTCTGAAGAG
GACATGGAGATGCTCCGATTGAAGCTGAAGGAGAGCTTCGAGAATGTGTC
GCAGGACCCCAAGGTGGCGGCCCAGATGGCTCCCTTCTTGAACGATGACT
TCAGGGCCATGATGGAGGACACCCAGAAATTCAGAGAGGAAATTCAAAAA
GTGGTGGATTTCTACATGAAGATGCCTGACCCGGACGTGGACGGCTCGGC
TTTCAGTGGCTTGGACATGTCAATGTTCGAAGGGCTGGCCAAGAGCCCCG
ATGAAGACGCGAGTGATGATCTGGATAATCTGGCGGATGATGATGATGAA
GATGGAGGGGAACTTTAGGTTTTCTAGAGAGAGGGAGAGAGGGAGGGTAG
GAGGGGAGAAGAAGGAGGAGCTGGAGGAGCAGGAGTAACCGGAGCAGGAG
GATAATCAAGACAAAGAAACAAAAAAGACATTTGTAAAGAATGCGATCGA
CTGGAATGAAAGGTATTTCTTTGTTGTATTTTCCATTCTGAAAATACCAA
GGCAAAAAAAGAACGACGGCCTCAAGTCAAGGTTCAAAATCCCACTTTTT
GGCAGAAGCTCAGAAAGTTGTACTCGTCATCATTCGCCGCCCCACGCAAC
CCCCCTTGCCCTCTGCCGCCTCGTTGCTCTGAATCGCCTCTGTTGCCTTG
TCAGCACCCTTGCCCGAAGCCCATCATACCTGTAGATAGCTTGCTAGAAG
CCAGCATCCTGTACAGGCTCTTTAGAATCCACGGACTATTAGTCTTCCTC
AAGTCACATGTCCTCTCTTCGAGACCCTCATTTTTTTTACAACCAGCATC
ACACTCTACATCTATCGACACCG
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protein sequence of NO29G01200.1

>NO29G01200.1-protein ID=NO29G01200.1-protein|Name=NO29G01200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=316bp
MAAKKNITTTTFLLVLTLFCYCFSYVFGAAAPVNIVVTLRGKKYDLTASS
VQDIQSQMEGKSGLKPTQQAILFKGKQLSSTEELLAAGVTEGDTLNIVPT
KGDAPRAPPPSRPRPPLPTDTDLSESAPAAPAAPAASAAAGPSTPDELLS
MLNGMLGNSGLGGLAGAGSPEDAAKMFQGMDMGKVAKMYQAFIWKLVRSP
IVARYLSSEEDMEMLRLKLKESFENVSQDPKVAAQMAPFLNDDFRAMMED
TQKFREEIQKVVDFYMKMPDPDVDGSAFSGLDMSMFEGLAKSPDEDASDD
LDNLADDDDEDGGEL*
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mRNA from alignment at chr29:392557..394663-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO29G01200.1 ID=NO29G01200.1|Name=NO29G01200.1|organism=Nannochloropsis oceanica|type=mRNA|length=2107bp|location=Sequence derived from alignment at chr29:392557..394663- (Nannochloropsis oceanica)
ACAGGCACACAAGGATCATCACCTCCCTATTCAGCATCTAGCAGCAGCAA
GCAAAAGCAATCTCAAAACGATGGCGGCCAAGAAGAATATCACCACGACC
ACATTCCTGCTTGTCTTGACCCTCTTCTGCTATTGTTTTTCCTATGTGTT
TGGCGCTGCGGTACGTTTTCTTCGGGGAGCTGTTCGTCTGTGAAGATAGG
AACCAGGGAAGGGGTCCTCGTCCTGCAGTTGCTGTAGAGATGGGGATGGT
GCTCCTTTATCAGTGACTCGGTGTTCATTTCCTGTTATCTTCATCCTTAT
GTACTGTTCGTTGTTCGTTGTTCTGCTACTTGTAGGGCACGATTCAATCC
GTGTCCATGTGTGTAATCGGAGGCAATGCAAGCGAAGGTGTTGGTCCCAG
TACAATATGAGGCGAAGCATGATTCACTTTGACCTCGCCCTTTCCTCCTT
CTTTCATCACCTTAGGCCCCTGTCAACATTGTCGTCACCCTACGCGGCAA
GAAGTATGACCTGACTGCCAGCAGCGTGCAAGATATCCAGTCTCAAATGG
AGGGCAAAAGCGGGCTCAAGCCTACCCAGCAAGCCATCCTTTTCAAAGGC
AAGCAGCTCTCTTCCACCGAGGAGCTCCTGGCCGCCGGTGTCACGGAGGG
AGACACCCTCAACATAGTCCCCACCAAAGGTGATGCCCCCCGCGCCCCTC
CTCCCTCCCGTCCTCGCCCTCCCCTTCCTACGGACACGGACCTGTCCGAG
TCCGCCCCAGCTGCTCCTGCTGCCCCTGCTGCTTCTGCTGCTGCGGGCCC
GTCTACACCTGATGAGCTTCTGTCGATGCTCAATGGCATGCTTGGAAACA
GCGGTCTTGGTAAGCGATTTCCTCTTTCTCCCCCCTTGCCGCCTCCTTGA
CTAACCTCTTCCTCCTCCCTCCTTTCCCCCTCCCACATCAGGCGGGCTAG
CGGGCGCTGGGTCCCCCGAGGACGCCGCGAAGATGTTCCAGGGGATGGAC
ATGGGTAAGGTGGCGAAGATGTACCAAGCCTTCATCTGGAAGCTTGTCCG
TTCCCCCATTGTGGCGCGTTACCTTTCTTCTGAAGAGGACATGGAGATGC
TCCGATTGAAGCTGAAGGAGAGCTTCGAGAATGTGTCGCAGGACCCCAAG
GTGGCGGCCCAGATGGCTCCCTTCTTGAACGATGACTTCAGGGCCATGAT
GGAGGACACCCAGAAATTCAGAGAGGTAGGGAGGGAGGGAGGAAGGAAGG
GAGAGAGGGAGGAAAGGAGACTCAAAGCAATGAAATACCTGTGTTCCTAT
GACAGAGGCGCACAGGCGCACACACATACGAATACAGGCACACACGTTCT
TCCGACTTTCTGACCCCACATTTTCTCCTTCTCTTCTTTTTCCCTTGCAA
CTTTTTTTCTACTCCCCTACAGGAAATTCAAAAAGTGGTGGATTTCTACA
TGAAGATGCCTGACCCGGACGTGGACGGCTCGGCTTTCAGTGGCTTGGAC
ATGTCAATGTTCGAAGGGCTGGCCAAGAGCCCCGATGAAGACGCGAGTGA
TGATCTGGATAATCTGGCGGATGATGATGATGAAGATGGAGGGGAACTTT
AGGTTTTCTAGAGAGAGGGAGAGAGGGAGGGTAGGAGGGGAGAAGAAGGA
GGAGCTGGAGGAGCAGGAGTAACCGGAGCAGGAGGATAATCAAGACAAAG
AAACAAAAAAGACATTTGTAAAGAATGCGATCGACTGGAATGAAAGGTAT
TTCTTTGTTGTATTTTCCATTCTGAAAATACCAAGGCAAAAAAAGAACGA
CGGCCTCAAGTCAAGGTTCAAAATCCCACTTTTTGGCAGAAGCTCAGAAA
GTTGTACTCGTCATCATTCGCCGCCCCACGCAACCCCCCTTGCCCTCTGC
CGCCTCGTTGCTCTGAATCGCCTCTGTTGCCTTGTCAGCACCCTTGCCCG
AAGCCCATCATACCTGTAGATAGCTTGCTAGAAGCCAGCATCCTGTACAG
GCTCTTTAGAATCCACGGACTATTAGTCTTCCTCAAGTCACATGTCCTCT
CTTCGAGACCCTCATTTTTTTTACAACCAGCATCACACTCTACATCTATC
GACACCG
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Coding sequence (CDS) from alignment at chr29:392557..394663-

>NO29G01200.1 ID=NO29G01200.1|Name=NO29G01200.1|organism=Nannochloropsis oceanica|type=CDS|length=948bp|location=Sequence derived from alignment at chr29:392557..394663- (Nannochloropsis oceanica)
ATGGCGGCCAAGAAGAATATCACCACGACCACATTCCTGCTTGTCTTGAC
CCTCTTCTGCTATTGTTTTTCCTATGTGTTTGGCGCTGCGGCCCCTGTCA
ACATTGTCGTCACCCTACGCGGCAAGAAGTATGACCTGACTGCCAGCAGC
GTGCAAGATATCCAGTCTCAAATGGAGGGCAAAAGCGGGCTCAAGCCTAC
CCAGCAAGCCATCCTTTTCAAAGGCAAGCAGCTCTCTTCCACCGAGGAGC
TCCTGGCCGCCGGTGTCACGGAGGGAGACACCCTCAACATAGTCCCCACC
AAAGGTGATGCCCCCCGCGCCCCTCCTCCCTCCCGTCCTCGCCCTCCCCT
TCCTACGGACACGGACCTGTCCGAGTCCGCCCCAGCTGCTCCTGCTGCCC
CTGCTGCTTCTGCTGCTGCGGGCCCGTCTACACCTGATGAGCTTCTGTCG
ATGCTCAATGGCATGCTTGGAAACAGCGGTCTTGGCGGGCTAGCGGGCGC
TGGGTCCCCCGAGGACGCCGCGAAGATGTTCCAGGGGATGGACATGGGTA
AGGTGGCGAAGATGTACCAAGCCTTCATCTGGAAGCTTGTCCGTTCCCCC
ATTGTGGCGCGTTACCTTTCTTCTGAAGAGGACATGGAGATGCTCCGATT
GAAGCTGAAGGAGAGCTTCGAGAATGTGTCGCAGGACCCCAAGGTGGCGG
CCCAGATGGCTCCCTTCTTGAACGATGACTTCAGGGCCATGATGGAGGAC
ACCCAGAAATTCAGAGAGGAAATTCAAAAAGTGGTGGATTTCTACATGAA
GATGCCTGACCCGGACGTGGACGGCTCGGCTTTCAGTGGCTTGGACATGT
CAATGTTCGAAGGGCTGGCCAAGAGCCCCGATGAAGACGCGAGTGATGAT
CTGGATAATCTGGCGGATGATGATGATGAAGATGGAGGGGAACTTTAG
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Synonyms
Publications