NO29G01010, NO29G01010 (gene) Nannochloropsis oceanica

Overview
NameNO29G01010
Unique NameNO29G01010
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1852
Alignment locationchr29:346805..348656 +

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Properties
Property NameValue
DescriptionAtp-dependent protease la 1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr29genomechr29:346805..348656 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004252serine-type endopeptidase activity
GO:0004176ATP-dependent peptidase activity
GO:0016787hydrolase activity
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO:0019538protein metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR020568Ribosomal_S5_D2-typ_fold
IPR008269Pept_S16_C
Homology
BLAST of NO29G01010 vs. NCBI_GenBank
Match: EWM21310.1 (atp-dependent protease la [Nannochloropsis gaditana])

HSP 1 Score: 459.5 bits (1181), Expect = 1.300e-125
Identity = 248/365 (67.95%), Postives = 280/365 (76.71%), Query Frame = 0
Query:    1 MAESCMVALTWVKAKNRDLVRWMGMVEGREGEGTGGLLIDLLRPDMDVHINFPSCEAEKNGPSAGATVATSLVLMMTGARLRPNVAISGEINLRGELLPIGNVKEKVAAAARQGITHIVLSSANIKQFKRLPTKARNAVKALKADHMVEVLKHAVEPPGRGRGGYVSRYEHCVRKVEKMGTTASLACSHVKGKVQWVECCATFGRGDWHITGNVQEGTRGSVLVARTWVRRHAASIVARLGRGARVRVELCALKGLGPEWRGRGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTILPPSSFGVEDPPSSSPLPAPQLDMHVHLPETEVAKDVSINGAAAAVSLIAVMTGLAVRP 366
            MAESCMVAL+WVKAK RDL  WM + EG +GEG+ G L+DL RPD+DVH+NFPSCEAEKNGPSAGATVATSLVLMMTGA+L PN+AISGEINL+G+LLPIGNVKEKVAAAARQGITHIVLSSAN+KQF+RLP + RNAVKALKA+H+VEVLKHAV PPG GR GY +RYEH +R+V  +G  ASLACSHVKG+VQWVECCAT GRG+WHITGNV EGTRGSVLVARTWVRR+AA+IVARLG    V+VELCAL GLGP WR RG                                            P +    DP   + LP PQLD+H+H+P T+VAKDVSINGAAAAVS+IAVMTGLAVRP
Sbjct:  241 MAESCMVALSWVKAKKRDLCLWMSL-EGEDGEGS-GCLVDLHRPDLDVHVNFPSCEAEKNGPSAGATVATSLVLMMTGAQLLPNIAISGEINLKGDLLPIGNVKEKVAAAARQGITHIVLSSANVKQFRRLPARIRNAVKALKANHIVEVLKHAVLPPG-GR-GYQARYEHRLREVAGLGLAASLACSHVKGRVQWVECCATTGRGEWHITGNVLEGTRGSVLVARTWVRRNAAAIVARLGGKTSVQVELCALHGLGPAWRLRGKETGAVGPALAAGTPSLPLEPSRRSNGKHPLSP----------SPGTLASGDP---ALLPPPQLDLHIHMPGTDVAKDVSINGAAAAVSMIAVMTGLAVRP 588          
BLAST of NO29G01010 vs. NCBI_GenBank
Match: GAQ80864.1 (Lon protease [Klebsormidium nitens])

HSP 1 Score: 116.7 bits (291), Expect = 2.100e-22
Identity = 64/163 (39.26%), Postives = 97/163 (59.51%), Query Frame = 0
Query:    3 ESCMVALTWVKAKNRDLVRWMGMVEGREGEGTGGLLIDLLRPDMDVHINFPSCEAEKNGPSAGATVATSLVLMMTGARLRPNVAISGEINLRGELLPIGNVKEKVAAAARQGITHIVLSSANIKQFKRLPTKARNAVKALKADHMVEVLKHAVEPPGRGRGGY 166
            ES  +ALTWV+A+ ++L      + G+  +G+       L   +DVHI+FP+    K+GPSAG T+AT+LV +++G  LR + A++GE+ LRG +LP+G VK+KV AA R G+  ++L   N+K  K +P      ++   A  M +VL HA E      GGY
Sbjct:  745 ESAQIALTWVRARAQEL-----NLHGKRADGS-------LVEGLDVHIHFPAGAVPKDGPSAGVTMATALVSLLSGRCLRADTAMTGEVTLRGLVLPVGGVKDKVLAAHRMGVKRVILPERNVKDLKEVPENVLKELEICPALRMEDVLTHAFE------GGY 889          
BLAST of NO29G01010 vs. NCBI_GenBank
Match: KOO31430.1 (ATP-dependent protease la [Chrysochromulina sp. CCMP291])

HSP 1 Score: 111.3 bits (277), Expect = 8.600e-21
Identity = 60/157 (38.22%), Postives = 94/157 (59.87%), Query Frame = 0
Query:    1 MAESCMVALTWVKAKNRDLVRWMGMVEGREGEGTGGLLIDLLRPDMDVHINFPSCEAEKNGPSAGATVATSLVLMMTGARLRPNVAISGEINLRGELLPIGNVKEKVAAAARQGITHIVLSSANIKQFKRLPTKARNAVKALKADHMVEVLKHAVEP 158
            M ES M A +W++A   +L    G+V    G  +GG L   L    D+HI+FP+    K+GPSAG T+ T++V ++TG ++RP++A++GE+ LRG +LP+G +KEKV AA R G+  ++L + N K  + LP      +  +    + EVL  A+ P
Sbjct:  370 MKESAMAARSWIRAHAHEL----GLVGAEPGAVSGGPLGHFLN-STDLHIHFPAGAVPKDGPSAGVTITTAIVSLLTGRKVRPDLAMTGEVTLRGLVLPVGGIKEKVIAAHRGGMRTVILPAKNEKDLRELPQTVLRDMTFILVREIREVLDAALLP 521          
BLAST of NO29G01010 vs. NCBI_GenBank
Match: XP_023752825.1 (lon protease homolog 2, peroxisomal-like isoform X1 [Lactuca sativa] >PLY93801.1 hypothetical protein LSAT_6X89400 [Lactuca sativa])

HSP 1 Score: 111.3 bits (277), Expect = 8.600e-21
Identity = 60/154 (38.96%), Postives = 90/154 (58.44%), Query Frame = 0
Query:    3 ESCMVALTWVKAKNRDLVRWMGMVEGREGEGTGGLLIDLLRPDMDVHINFPSCEAEKNGPSAGATVATSLVLMMTGARLRPNVAISGEINLRGELLPIGNVKEKVAAAARQGITHIVLSSANIKQFKRLPTKARNAVKALKADHMVEVLKHAVE 157
            ES  +ALTWV+A+  +L     +V   E           L    DVHI+FP+    K+GPSAG T+ TSLV + +  R+RP+ A++GE+ LRG +LP+G +K+KV AA R GI  +++   N+K    +P     +++ L A  M +VL+HA E
Sbjct:  731 ESAQIALTWVRARANEL----DLVSAEEKN---------LLEGRDVHIHFPAGAVPKDGPSAGVTLVTSLVSLFSRRRVRPDTAMTGEMTLRGLVLPVGGIKDKVLAAHRYGIKRVIMPERNLKDLVEVPAAVLGSLEILLAKRMEDVLQHAFE 871          
BLAST of NO29G01010 vs. NCBI_GenBank
Match: XP_023752826.1 (lon protease homolog 2, peroxisomal-like isoform X2 [Lactuca sativa] >XP_023752827.1 lon protease homolog 2, peroxisomal-like isoform X2 [Lactuca sativa])

HSP 1 Score: 111.3 bits (277), Expect = 8.600e-21
Identity = 60/154 (38.96%), Postives = 90/154 (58.44%), Query Frame = 0
Query:    3 ESCMVALTWVKAKNRDLVRWMGMVEGREGEGTGGLLIDLLRPDMDVHINFPSCEAEKNGPSAGATVATSLVLMMTGARLRPNVAISGEINLRGELLPIGNVKEKVAAAARQGITHIVLSSANIKQFKRLPTKARNAVKALKADHMVEVLKHAVE 157
            ES  +ALTWV+A+  +L     +V   E           L    DVHI+FP+    K+GPSAG T+ TSLV + +  R+RP+ A++GE+ LRG +LP+G +K+KV AA R GI  +++   N+K    +P     +++ L A  M +VL+HA E
Sbjct:  574 ESAQIALTWVRARANEL----DLVSAEEKN---------LLEGRDVHIHFPAGAVPKDGPSAGVTLVTSLVSLFSRRRVRPDTAMTGEMTLRGLVLPVGGIKDKVLAAHRYGIKRVIMPERNLKDLVEVPAAVLGSLEILLAKRMEDVLQHAFE 714          
BLAST of NO29G01010 vs. NCBI_GenBank
Match: OVA12720.1 (Peptidase S16 [Macleaya cordata])

HSP 1 Score: 110.5 bits (275), Expect = 1.500e-20
Identity = 59/153 (38.56%), Postives = 91/153 (59.48%), Query Frame = 0
Query:    3 ESCMVALTWVKAKNRDL-VRWMGMVEGREGEGTGGLLIDLLRPDMDVHINFPSCEAEKNGPSAGATVATSLVLMMTGARLRPNVAISGEINLRGELLPIGNVKEKVAAAARQGITHIVLSSANIKQFKRLPTKARNAVKALKADHMVEVLKHA 155
            ES  +ALTWV+A+  DL +   G +   EG+              DVHI+FP+    K+GPSAG T+ TSLV + +  R+RP+ A++GE+ LRG +LP+G +K+K+ AA R GI  ++L   N+K    +P    ++++ L    M +VL+HA
Sbjct:  736 ESAQIALTWVRARASDLKLVASGNISLMEGQ--------------DVHIHFPAGAVPKDGPSAGVTLVTSLVSLFSQQRVRPDTAMTGEMTLRGLVLPVGGIKDKILAAHRYGIKRVILPERNLKDLVEVPAAVLSSIEILLVKRMEDVLEHA 874          
BLAST of NO29G01010 vs. NCBI_GenBank
Match: XP_023742192.1 (lon protease homolog 2, peroxisomal-like isoform X1 [Lactuca sativa] >PLY67410.1 hypothetical protein LSAT_6X67340 [Lactuca sativa])

HSP 1 Score: 110.5 bits (275), Expect = 1.500e-20
Identity = 60/154 (38.96%), Postives = 89/154 (57.79%), Query Frame = 0
Query:    3 ESCMVALTWVKAKNRDLVRWMGMVEGREGEGTGGLLIDLLRPDMDVHINFPSCEAEKNGPSAGATVATSLVLMMTGARLRPNVAISGEINLRGELLPIGNVKEKVAAAARQGITHIVLSSANIKQFKRLPTKARNAVKALKADHMVEVLKHAVE 157
            ES  +ALTWV+A+  +L       EG   EG             D+HI+FP+    K+GPSAG T+ TSLV + +  R+R + A++GEI LRG +LP+G +K+KV AA R G+  ++L   N+K    +P     +++ L A  M +VL+HA E
Sbjct:  743 ESAQIALTWVRARAAELNLGCAQGEGNLLEG------------RDIHIHFPAGAVPKDGPSAGVTLVTSLVSLFSRRRVRSDTAMTGEITLRGLVLPVGGIKDKVLAAHRNGLKRVILPERNLKDLVEVPPAVLASMEILLAKRMEDVLEHAFE 884          
BLAST of NO29G01010 vs. NCBI_GenBank
Match: XP_023742193.1 (lon protease homolog 2, peroxisomal-like isoform X2 [Lactuca sativa])

HSP 1 Score: 110.5 bits (275), Expect = 1.500e-20
Identity = 60/154 (38.96%), Postives = 89/154 (57.79%), Query Frame = 0
Query:    3 ESCMVALTWVKAKNRDLVRWMGMVEGREGEGTGGLLIDLLRPDMDVHINFPSCEAEKNGPSAGATVATSLVLMMTGARLRPNVAISGEINLRGELLPIGNVKEKVAAAARQGITHIVLSSANIKQFKRLPTKARNAVKALKADHMVEVLKHAVE 157
            ES  +ALTWV+A+  +L       EG   EG             D+HI+FP+    K+GPSAG T+ TSLV + +  R+R + A++GEI LRG +LP+G +K+KV AA R G+  ++L   N+K    +P     +++ L A  M +VL+HA E
Sbjct:  742 ESAQIALTWVRARAAELNLGCAQGEGNLLEG------------RDIHIHFPAGAVPKDGPSAGVTLVTSLVSLFSRRRVRSDTAMTGEITLRGLVLPVGGIKDKVLAAHRNGLKRVILPERNLKDLVEVPPAVLASMEILLAKRMEDVLEHAFE 883          
BLAST of NO29G01010 vs. NCBI_GenBank
Match: OMP08170.1 (hypothetical protein COLO4_06710 [Corchorus olitorius])

HSP 1 Score: 109.8 bits (273), Expect = 2.500e-20
Identity = 58/154 (37.66%), Postives = 91/154 (59.09%), Query Frame = 0
Query:    3 ESCMVALTWVKAKNRDLVRWMGMVEGREGEGTGGLLIDLLRPDMDVHINFPSCEAEKNGPSAGATVATSLVLMMTGARLRPNVAISGEINLRGELLPIGNVKEKVAAAARQGITHIVLSSANIKQFKRLPTKARNAVKALKADHMVEVLKHAVE 157
            ES  +ALTWV+A+  DL       +   GEGT       L    D+HI+FP+    K+GPSAG T+ T+LV + +   +R + A++GE+ LRG +LP+G +K+K+ AA R G+  ++L   N+K    +P    ++++ L A  M +VL+HA E
Sbjct:  616 ESAQIALTWVRARAADL-------KLAAGEGTN------LLQGRDIHIHFPAGAVPKDGPSAGVTLVTALVSLFSQKSVRADTAMTGEMTLRGLVLPVGGIKDKILAAHRHGVKRVILPERNLKDLVEVPAAVLSSLEILLAKRMEDVLEHAFE 756          
BLAST of NO29G01010 vs. NCBI_GenBank
Match: XP_013457545.1 (lon protease homolog 2, peroxisomal [Medicago truncatula] >KEH31576.1 lon-related ATP-dependent protease, putative [Medicago truncatula])

HSP 1 Score: 109.0 bits (271), Expect = 4.300e-20
Identity = 60/158 (37.97%), Postives = 89/158 (56.33%), Query Frame = 0
Query:    3 ESCMVALTWVKAKNRDL----VRWMGMVEGREGEGTGGLLIDLLRPDMDVHINFPSCEAEKNGPSAGATVATSLVLMMTGARLRPNVAISGEINLRGELLPIGNVKEKVAAAARQGITHIVLSSANIKQFKRLPTKARNAVKALKADHMVEVLKHAVE 157
            ES  +ALTWV+A+  DL     +   ++EGR                 DVHI+FP+    K+GPSAG T+ TSLV + T   +R + A++GE+ LRG +LP+G VK+K+ AA R GI  ++L   N+K    +P      ++ L A  M +VL+HA +
Sbjct:  737 ESAQIALTWVRARTTDLKVDAAKGFNLLEGR-----------------DVHIHFPAGAVPKDGPSAGVTLVTSLVSLFTQKSVRSDTAMTGEMTLRGLVLPVGGVKDKILAAHRYGIKRVILPERNLKDLAEVPASVLANLEILLAKRMEDVLEHAFD 877          
The following BLAST results are available for this feature:
BLAST of NO29G01010 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM21310.11.300e-12567.95atp-dependent protease la [Nannochloropsis gaditan... [more]
GAQ80864.12.100e-2239.26Lon protease [Klebsormidium nitens][more]
KOO31430.18.600e-2138.22ATP-dependent protease la [Chrysochromulina sp. CC... [more]
XP_023752825.18.600e-2138.96lon protease homolog 2, peroxisomal-like isoform X... [more]
XP_023752826.18.600e-2138.96lon protease homolog 2, peroxisomal-like isoform X... [more]
OVA12720.11.500e-2038.56Peptidase S16 [Macleaya cordata][more]
XP_023742192.11.500e-2038.96lon protease homolog 2, peroxisomal-like isoform X... [more]
XP_023742193.11.500e-2038.96lon protease homolog 2, peroxisomal-like isoform X... [more]
OMP08170.12.500e-2037.66hypothetical protein COLO4_06710 [Corchorus olitor... [more]
XP_013457545.14.300e-2037.97lon protease homolog 2, peroxisomal [Medicago trun... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL061nonsL061Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR038ncniR038Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR081ngnoR081Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005222NSK005222Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO29G01010.1NO29G01010.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100233g7gene9107Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO29G01010.1NO29G01010.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO29G01010 ID=NO29G01010|Name=NO29G01010|organism=Nannochloropsis oceanica|type=gene|length=1852bp
ATGGCAGAGAGCTGTATGGTGGCTCTGACGTGGGTCAAGGCGAAAAATCG
AGACTTGGTGCGTTGGATGGGGATGGTAGAAGGAAGGGAGGGGGAGGGCA
CCGGGGGCTTGTTGATTGATTTGCTCCGGCCGGATATGGACGTGCACATT
AATTTCCCGAGCTGTGAAGCGGAGAAGAATGGGCCGAGCGCGGGTGCGAC
GGTGGCGACGAGTTTGGTGCTGATGATGACAGGGGCGAGGCTGAGGCCTA
ATGTGGCCATTTCGGGGGAGATTAATTTGAGGGGAGAACTGTTGCCGATC
GGAAACGTCAAGGAGAAGGTGGCGGCGGCTGCCCGGCAAGGGATTACGCA
CATTGTCCTCTCAAGTGCGAACATCAAGCAGTTCAAACGGCTGCCGACGA
AAGCCCGAAACGCCGTTAAGGCCCTCAAGGCCGATCACATGGTGGAGGTT
TTAAAGCACGCAGTGGAGCCTCCTGGGAGAGGGCGGGGCGGATACGTGAG
TCGGTACGAGCATTGCGTCAGGAAAGTGGAGAAAATGGGGACCACGGCGT
CGTTGGCATGCAGCCATGTGAAGGGGAAGGTGCAGTGGGTGGAGTGCTGC
GCGACCTTCGGGCGGGGTGACTGGCACATCACGGGGAATGTGCAAGAAGG
CACGAGAGGATCGGTGCTGGTGGCGCGGACGTGGGTGAGGCGCCACGCGG
CGAGCATTGTGGCCCGGCTGGGACGAGGGGCACGGGTACGTGTGGAATTG
TGTGCGTTGAAGGGACTGGGTCCCGAGTGGAGGGGGAGGGGGGTGGATGG
GAAGGGGCAAGATGGAGAAGAAGGAGGAGGAGAAGGGGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGGAAGGCGGGGTATGGGACGGGTGGTAGG
AGTGCAAACGGTACGATTCTCCCTCCCTCTTCCTTTGGTGTGGAGGATCC
TCCTTCCTCTTCACCTCTACCCGCGCCGCAGTTGGATATGCACGTGCACC
TTCCCGAGACGGAGGTGGCTAAGGACGTATCAATCAATGGCGCGGCTGCT
GCAGTGAGTTTGATTGCCGTCATGACGGGCTTGGCTGTTCGTCCAGgtat
gtggtacaccctccctccctttttctctcccctgctccctctctccttcc
ttcctctcccttcttccttcccttcccctctcactcacctaaaaaatgca
atttaaatgccatgcacatgtctggaatggctcgatatggagtgcactgg
ctgtatataggtgtcaaggcatggccacgtgtgcttatgtggatagtcgt
tcttgccgcaactgacccaaatccaccctccctccttctctccctccctc
cagACGTAGCAGTGCTGGGAGAAATTACCCTGTCAGGCGTCTTGTGGCCC
CTCGAACAAGTGAACGAGGCCGAGGTCCGGACGGCCATAGACGCCAACAT
CTCTCTCCTCATCCTCCCGATGgtaagctctccctccctccgtcattcct
tccctcccttccttggatgtgagttcctttttcaccgagaagctcacatc
tcatccccttcctccctcatactttccagGATAATGTGAGGCAGATAGAA
AAGGTTCCGGAGGAGATGAGGAAAGGCCTCCGGGTCGTGGGCACCGTGCG
CCTGCTCGACGTCTTGGAAGAGCTTTTTATATTTCCTAGGGAGGAGGAAG
GGGAGGAAGAGGGGAGGGAAGGTGGAGGGAGGGAGGGAAGGACGGGCAAC
GGGAGTAGTAGTCGTGCGTATGGGAGGGAGATGGTGGAGGGAAGGAAGGG
AGGGAGGGAGGGGGAGGTGTCGATGATGGTGGTGGATGGGGGAACGGGAT
AA
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protein sequence of NO29G01010.1

>NO29G01010.1-protein ID=NO29G01010.1-protein|Name=NO29G01010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=496bp
MAESCMVALTWVKAKNRDLVRWMGMVEGREGEGTGGLLIDLLRPDMDVHI
NFPSCEAEKNGPSAGATVATSLVLMMTGARLRPNVAISGEINLRGELLPI
GNVKEKVAAAARQGITHIVLSSANIKQFKRLPTKARNAVKALKADHMVEV
LKHAVEPPGRGRGGYVSRYEHCVRKVEKMGTTASLACSHVKGKVQWVECC
ATFGRGDWHITGNVQEGTRGSVLVARTWVRRHAASIVARLGRGARVRVEL
CALKGLGPEWRGRGVDGKGQDGEEGGGEGGGGGGGGGGGGGKAGYGTGGR
SANGTILPPSSFGVEDPPSSSPLPAPQLDMHVHLPETEVAKDVSINGAAA
AVSLIAVMTGLAVRPDVAVLGEITLSGVLWPLEQVNEAEVRTAIDANISL
LILPMDNVRQIEKVPEEMRKGLRVVGTVRLLDVLEELFIFPREEEGEEEG
REGGGREGRTGNGSSSRAYGREMVEGRKGGREGEVSMMVVDGGTG*
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Synonyms
Publications