NO29G01010.1, NO29G01010.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO29G01010.1
Unique NameNO29G01010.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1488
Alignment locationchr29:346805..348656 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr29genomechr29:346805..348656 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO29G01010.1 vs.
Match: EWM21310.1 (atp-dependent protease la [Nannochloropsis gaditana])

HSP 1 Score: 439.1 bits (1128), Expect = 1.800e-119
Identity = 255/365 (69.86%), Postives = 286/365 (78.36%), Query Frame = 0 
Query:    1 MAESCMVALTWVKAKNRDLVRWMGMVEGREGEGTGGLLIDLLRPDMDVHINFPSCEAEKNGPSAGATVATSLVLMMTGARLRPNVAISGEINLRGELLPIGNVKEKVAAAARQGITHIVLSSANIKQFKRLPTKARNAVKALKADHMVEVLKHAVEPPGRGRGGYVSRYEHCVRKVEKMGTTASLACSHVKGKVQWVECCATFGRGDWHITGNVQEGTRGSVLVARTWVRRHAASIVARLGRGARVRVELCALKGLGPEWRGRGVDGKGQDGEEGGGEGGGGGGGGGGGGGKAGYGTGGRSANGTILPPSSFGVEDPPSSSPLPAPQLDMHVHLPETEVAKDVSINGAAAAVSLIAVMTGLAVRP 366
            MAESCMVAL+WVKAK RDL  WM + EG +GEG+G  L+DL RPD+DVH+NFPSCEAEKNGPSAGATVATSLVLMMTGA+L PN+AISGEINL+G+LLPIGNVKEKVAAAARQGITHIVLSSAN+KQF+RLP + RNAVKALKA+H+VEVLKHAV PPG GR GY +RYEH +R+V  +G  ASLACSHVKG+VQWVECCAT GRG+WHITGNV EGTRGSVLVARTWVRR+AA+IVARLG    V+VELCAL GLGP WR R            G E G  G     G          RS     L PS  G       + LP PQLD+H+H+P T+VAKDVSINGAAAAVS+IAVMTGLAVRP
Sbjct:  241 MAESCMVALSWVKAKKRDLCLWMSL-EGEDGEGSG-CLVDLHRPDLDVHVNFPSCEAEKNGPSAGATVATSLVLMMTGAQLLPNIAISGEINLKGDLLPIGNVKEKVAAAARQGITHIVLSSANVKQFRRLPARIRNAVKALKANHIVEVLKHAVLPPG-GR-GYQARYEHRLREVAGLGLAASLACSHVKGRVQWVECCATTGRGEWHITGNVLEGTRGSVLVARTWVRRNAAAIVARLGGKTSVQVELCALHGLGPAWRLR------------GKETGAVGPALAAGTPSLPLEPSRRSNGKHPLSPSP-GTLASGDPALLPPPQLDLHIHMPGTDVAKDVSINGAAAAVSMIAVMTGLAVRP 588
The following BLAST results are available for this feature:
BLAST of NO29G01010.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21310.11.800e-11969.86atp-dependent protease la [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO29G01010NO29G01010Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO29G01010.1NO29G01010.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO29G01010.1.cds1NO29G01010.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO29G01010.1.cds2NO29G01010.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO29G01010.1.cds3NO29G01010.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO29G01010.1 ID=NO29G01010.1|Name=NO29G01010.1|organism=Nannochloropsis oceanica|type=mRNA|length=1488bp
ATGGCAGAGAGCTGTATGGTGGCTCTGACGTGGGTCAAGGCGAAAAATCG
AGACTTGGTGCGTTGGATGGGGATGGTAGAAGGAAGGGAGGGGGAGGGCA
CCGGGGGCTTGTTGATTGATTTGCTCCGGCCGGATATGGACGTGCACATT
AATTTCCCGAGCTGTGAAGCGGAGAAGAATGGGCCGAGCGCGGGTGCGAC
GGTGGCGACGAGTTTGGTGCTGATGATGACAGGGGCGAGGCTGAGGCCTA
ATGTGGCCATTTCGGGGGAGATTAATTTGAGGGGAGAACTGTTGCCGATC
GGAAACGTCAAGGAGAAGGTGGCGGCGGCTGCCCGGCAAGGGATTACGCA
CATTGTCCTCTCAAGTGCGAACATCAAGCAGTTCAAACGGCTGCCGACGA
AAGCCCGAAACGCCGTTAAGGCCCTCAAGGCCGATCACATGGTGGAGGTT
TTAAAGCACGCAGTGGAGCCTCCTGGGAGAGGGCGGGGCGGATACGTGAG
TCGGTACGAGCATTGCGTCAGGAAAGTGGAGAAAATGGGGACCACGGCGT
CGTTGGCATGCAGCCATGTGAAGGGGAAGGTGCAGTGGGTGGAGTGCTGC
GCGACCTTCGGGCGGGGTGACTGGCACATCACGGGGAATGTGCAAGAAGG
CACGAGAGGATCGGTGCTGGTGGCGCGGACGTGGGTGAGGCGCCACGCGG
CGAGCATTGTGGCCCGGCTGGGACGAGGGGCACGGGTACGTGTGGAATTG
TGTGCGTTGAAGGGACTGGGTCCCGAGTGGAGGGGGAGGGGGGTGGATGG
GAAGGGGCAAGATGGAGAAGAAGGAGGAGGAGAAGGGGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGGAAGGCGGGGTATGGGACGGGTGGTAGG
AGTGCAAACGGTACGATTCTCCCTCCCTCTTCCTTTGGTGTGGAGGATCC
TCCTTCCTCTTCACCTCTACCCGCGCCGCAGTTGGATATGCACGTGCACC
TTCCCGAGACGGAGGTGGCTAAGGACGTATCAATCAATGGCGCGGCTGCT
GCAGTGAGTTTGATTGCCGTCATGACGGGCTTGGCTGTTCGTCCAGACGT
AGCAGTGCTGGGAGAAATTACCCTGTCAGGCGTCTTGTGGCCCCTCGAAC
AAGTGAACGAGGCCGAGGTCCGGACGGCCATAGACGCCAACATCTCTCTC
CTCATCCTCCCGATGGATAATGTGAGGCAGATAGAAAAGGTTCCGGAGGA
GATGAGGAAAGGCCTCCGGGTCGTGGGCACCGTGCGCCTGCTCGACGTCT
TGGAAGAGCTTTTTATATTTCCTAGGGAGGAGGAAGGGGAGGAAGAGGGG
AGGGAAGGTGGAGGGAGGGAGGGAAGGACGGGCAACGGGAGTAGTAGTCG
TGCGTATGGGAGGGAGATGGTGGAGGGAAGGAAGGGAGGGAGGGAGGGGG
AGGTGTCGATGATGGTGGTGGATGGGGGAACGGGATAA
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protein sequence of NO29G01010.1

>NO29G01010.1-protein ID=NO29G01010.1-protein|Name=NO29G01010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=496bp
MAESCMVALTWVKAKNRDLVRWMGMVEGREGEGTGGLLIDLLRPDMDVHI
NFPSCEAEKNGPSAGATVATSLVLMMTGARLRPNVAISGEINLRGELLPI
GNVKEKVAAAARQGITHIVLSSANIKQFKRLPTKARNAVKALKADHMVEV
LKHAVEPPGRGRGGYVSRYEHCVRKVEKMGTTASLACSHVKGKVQWVECC
ATFGRGDWHITGNVQEGTRGSVLVARTWVRRHAASIVARLGRGARVRVEL
CALKGLGPEWRGRGVDGKGQDGEEGGGEGGGGGGGGGGGGGKAGYGTGGR
SANGTILPPSSFGVEDPPSSSPLPAPQLDMHVHLPETEVAKDVSINGAAA
AVSLIAVMTGLAVRPDVAVLGEITLSGVLWPLEQVNEAEVRTAIDANISL
LILPMDNVRQIEKVPEEMRKGLRVVGTVRLLDVLEELFIFPREEEGEEEG
REGGGREGRTGNGSSSRAYGREMVEGRKGGREGEVSMMVVDGGTG*
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mRNA from alignment at chr29:346805..348656+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO29G01010.1 ID=NO29G01010.1|Name=NO29G01010.1|organism=Nannochloropsis oceanica|type=mRNA|length=1852bp|location=Sequence derived from alignment at chr29:346805..348656+ (Nannochloropsis oceanica)
ATGGCAGAGAGCTGTATGGTGGCTCTGACGTGGGTCAAGGCGAAAAATCG
AGACTTGGTGCGTTGGATGGGGATGGTAGAAGGAAGGGAGGGGGAGGGCA
CCGGGGGCTTGTTGATTGATTTGCTCCGGCCGGATATGGACGTGCACATT
AATTTCCCGAGCTGTGAAGCGGAGAAGAATGGGCCGAGCGCGGGTGCGAC
GGTGGCGACGAGTTTGGTGCTGATGATGACAGGGGCGAGGCTGAGGCCTA
ATGTGGCCATTTCGGGGGAGATTAATTTGAGGGGAGAACTGTTGCCGATC
GGAAACGTCAAGGAGAAGGTGGCGGCGGCTGCCCGGCAAGGGATTACGCA
CATTGTCCTCTCAAGTGCGAACATCAAGCAGTTCAAACGGCTGCCGACGA
AAGCCCGAAACGCCGTTAAGGCCCTCAAGGCCGATCACATGGTGGAGGTT
TTAAAGCACGCAGTGGAGCCTCCTGGGAGAGGGCGGGGCGGATACGTGAG
TCGGTACGAGCATTGCGTCAGGAAAGTGGAGAAAATGGGGACCACGGCGT
CGTTGGCATGCAGCCATGTGAAGGGGAAGGTGCAGTGGGTGGAGTGCTGC
GCGACCTTCGGGCGGGGTGACTGGCACATCACGGGGAATGTGCAAGAAGG
CACGAGAGGATCGGTGCTGGTGGCGCGGACGTGGGTGAGGCGCCACGCGG
CGAGCATTGTGGCCCGGCTGGGACGAGGGGCACGGGTACGTGTGGAATTG
TGTGCGTTGAAGGGACTGGGTCCCGAGTGGAGGGGGAGGGGGGTGGATGG
GAAGGGGCAAGATGGAGAAGAAGGAGGAGGAGAAGGGGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGGAAGGCGGGGTATGGGACGGGTGGTAGG
AGTGCAAACGGTACGATTCTCCCTCCCTCTTCCTTTGGTGTGGAGGATCC
TCCTTCCTCTTCACCTCTACCCGCGCCGCAGTTGGATATGCACGTGCACC
TTCCCGAGACGGAGGTGGCTAAGGACGTATCAATCAATGGCGCGGCTGCT
GCAGTGAGTTTGATTGCCGTCATGACGGGCTTGGCTGTTCGTCCAGGTAT
GTGGTACACCCTCCCTCCCTTTTTCTCTCCCCTGCTCCCTCTCTCCTTCC
TTCCTCTCCCTTCTTCCTTCCCTTCCCCTCTCACTCACCTAAAAAATGCA
ATTTAAATGCCATGCACATGTCTGGAATGGCTCGATATGGAGTGCACTGG
CTGTATATAGGTGTCAAGGCATGGCCACGTGTGCTTATGTGGATAGTCGT
TCTTGCCGCAACTGACCCAAATCCACCCTCCCTCCTTCTCTCCCTCCCTC
CAGACGTAGCAGTGCTGGGAGAAATTACCCTGTCAGGCGTCTTGTGGCCC
CTCGAACAAGTGAACGAGGCCGAGGTCCGGACGGCCATAGACGCCAACAT
CTCTCTCCTCATCCTCCCGATGGTAAGCTCTCCCTCCCTCCGTCATTCCT
TCCCTCCCTTCCTTGGATGTGAGTTCCTTTTTCACCGAGAAGCTCACATC
TCATCCCCTTCCTCCCTCATACTTTCCAGGATAATGTGAGGCAGATAGAA
AAGGTTCCGGAGGAGATGAGGAAAGGCCTCCGGGTCGTGGGCACCGTGCG
CCTGCTCGACGTCTTGGAAGAGCTTTTTATATTTCCTAGGGAGGAGGAAG
GGGAGGAAGAGGGGAGGGAAGGTGGAGGGAGGGAGGGAAGGACGGGCAAC
GGGAGTAGTAGTCGTGCGTATGGGAGGGAGATGGTGGAGGGAAGGAAGGG
AGGGAGGGAGGGGGAGGTGTCGATGATGGTGGTGGATGGGGGAACGGGAT
AA
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Coding sequence (CDS) from alignment at chr29:346805..348656+

>NO29G01010.1 ID=NO29G01010.1|Name=NO29G01010.1|organism=Nannochloropsis oceanica|type=CDS|length=1488bp|location=Sequence derived from alignment at chr29:346805..348656+ (Nannochloropsis oceanica)
ATGGCAGAGAGCTGTATGGTGGCTCTGACGTGGGTCAAGGCGAAAAATCG
AGACTTGGTGCGTTGGATGGGGATGGTAGAAGGAAGGGAGGGGGAGGGCA
CCGGGGGCTTGTTGATTGATTTGCTCCGGCCGGATATGGACGTGCACATT
AATTTCCCGAGCTGTGAAGCGGAGAAGAATGGGCCGAGCGCGGGTGCGAC
GGTGGCGACGAGTTTGGTGCTGATGATGACAGGGGCGAGGCTGAGGCCTA
ATGTGGCCATTTCGGGGGAGATTAATTTGAGGGGAGAACTGTTGCCGATC
GGAAACGTCAAGGAGAAGGTGGCGGCGGCTGCCCGGCAAGGGATTACGCA
CATTGTCCTCTCAAGTGCGAACATCAAGCAGTTCAAACGGCTGCCGACGA
AAGCCCGAAACGCCGTTAAGGCCCTCAAGGCCGATCACATGGTGGAGGTT
TTAAAGCACGCAGTGGAGCCTCCTGGGAGAGGGCGGGGCGGATACGTGAG
TCGGTACGAGCATTGCGTCAGGAAAGTGGAGAAAATGGGGACCACGGCGT
CGTTGGCATGCAGCCATGTGAAGGGGAAGGTGCAGTGGGTGGAGTGCTGC
GCGACCTTCGGGCGGGGTGACTGGCACATCACGGGGAATGTGCAAGAAGG
CACGAGAGGATCGGTGCTGGTGGCGCGGACGTGGGTGAGGCGCCACGCGG
CGAGCATTGTGGCCCGGCTGGGACGAGGGGCACGGGTACGTGTGGAATTG
TGTGCGTTGAAGGGACTGGGTCCCGAGTGGAGGGGGAGGGGGGTGGATGG
GAAGGGGCAAGATGGAGAAGAAGGAGGAGGAGAAGGGGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGGAAGGCGGGGTATGGGACGGGTGGTAGG
AGTGCAAACGGTACGATTCTCCCTCCCTCTTCCTTTGGTGTGGAGGATCC
TCCTTCCTCTTCACCTCTACCCGCGCCGCAGTTGGATATGCACGTGCACC
TTCCCGAGACGGAGGTGGCTAAGGACGTATCAATCAATGGCGCGGCTGCT
GCAGTGAGTTTGATTGCCGTCATGACGGGCTTGGCTGTTCGTCCAGACGT
AGCAGTGCTGGGAGAAATTACCCTGTCAGGCGTCTTGTGGCCCCTCGAAC
AAGTGAACGAGGCCGAGGTCCGGACGGCCATAGACGCCAACATCTCTCTC
CTCATCCTCCCGATGGATAATGTGAGGCAGATAGAAAAGGTTCCGGAGGA
GATGAGGAAAGGCCTCCGGGTCGTGGGCACCGTGCGCCTGCTCGACGTCT
TGGAAGAGCTTTTTATATTTCCTAGGGAGGAGGAAGGGGAGGAAGAGGGG
AGGGAAGGTGGAGGGAGGGAGGGAAGGACGGGCAACGGGAGTAGTAGTCG
TGCGTATGGGAGGGAGATGGTGGAGGGAAGGAAGGGAGGGAGGGAGGGGG
AGGTGTCGATGATGGTGGTGGATGGGGGAACGGGATAA
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Synonyms
Publications