NO29G00890, NO29G00890 (gene) Nannochloropsis oceanica

Overview
NameNO29G00890
Unique NameNO29G00890
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1837
Alignment locationchr29:314708..316544 -

Link to JBrowse

Properties
Property NameValue
DescriptionCystathionine beta-lyase
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr29genomechr29:314708..316544 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0030170pyridoxal phosphate binding
GO:0030170pyridoxal phosphate binding
GO:0005488binding
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR015424PyrdxlP-dep_Trfase
IPR000277Cys/Met-Metab_PyrdxlP-dep_enz
Homology
BLAST of NO29G00890 vs. NCBI_GenBank
Match: EWM21308.1 (cystathionine gamma-synthase [Nannochloropsis gaditana])

HSP 1 Score: 547.4 bits (1409), Expect = 4.300e-152
Identity = 271/457 (59.30%), Postives = 343/457 (75.05%), Query Frame = 0
Query:    1 MSAANLPKKASIETILAQAGIRYQEITSISSRDIIPPLHLSTTFERDIDGTYSNGFVYSRHDHPTRALLEKGGSNAERRKIHFSNPSLPPSLPLFFLPVMTDIEEGAEWSAAFASGMQAATVLLQAFGANAYLILPNDLYQGIRILVRSTFEEWGLRNECVDMTDLGAVKEIMDRVFADAGTSRVLVWMESPSNPLLKVTDVRAIVALARHYSKKHGKDFLSILDTTWHSPFLLQALLPLGIDITYGSATKFLGGHSDLLAGVITGRKRKALVSGGGGMVDLEIPVRHLQQTMGGGLAPFDCWLLLRGLKTLPCRMRTHCENAQKLSRFFETHPRISVVHFPGLESHPGHGLHRAMMRKEGMDGSMLSIQMKGEEG----GTEDETAVEEEVFKVLARLKIFRRATSLGATESLCEHRRSVEGPLSQTPRNLVRISVGLEGYEDLEEDWRQALSEEG 454
            +S  ++P++  IETILAQAG+ YQ+IT++SSRD+IPPLHLSTTFER  DG+Y  GFVY+RH +PTRALLEK                           VMTD+E GA+WSAAF  GMQA T +  AFGA A ++L  +LYQGIR+L+ + F  WGLR + VDMTDLGA++  M RVFAD  T+RVL+W+E+PSNP+L++ DVRA++A+A   ++ H KDF+S+LDTTW +P+LLQA+ PL ID+T  SATKFLGGHSDLLAGV+TGR+RK   + G   +DLE P+R LQ+  GG L PF+ WLLLRGLK+LP RMRTHCENA +L+ FF +HPRI+ VH+PGL SHPGH +H AMM +EG+ GSM++IQ++  +G    G E+   VE  V +V+ARL++FRRATSLG TESLCEHRRSVEG  S+TP +LVR+SVGLE YEDLEEDW QAL EEG
Sbjct:   18 ISYTHMPRR--IETILAQAGLHYQDITAVSSRDVIPPLHLSTTFERGSDGSYPGGFVYARHGNPTRALLEK---------------------------VMTDLEGGADWSAAFTCGMQAVTAVFLAFGAQATVLLNQELYQGIRLLLDAPFGSWGLRAQVVDMTDLGALEVAMARVFADPATARVLLWLETPSNPMLQIIDVRAVIAMAEGQARLHRKDFVSVLDTTWLTPYLLQAVGPLRIDLTLASATKFLGGHSDLLAGVLTGRRRKLSHATGTTFLDLEAPIRQLQRHAGGNLPPFEAWLLLRGLKSLPARMRTHCENAHRLAHFFASHPRIAAVHYPGLPSHPGHAVHSAMMSREGLSGSMMAIQVRARDGEGEDGREEGAEVEAMVLRVVARLRVFRRATSLGGTESLCEHRRSVEGAESRTPWDLVRLSVGLEAYEDLEEDWVQALGEEG 445          
BLAST of NO29G00890 vs. NCBI_GenBank
Match: WP_092019013.1 (aminotransferase class V-fold PLP-dependent enzyme [Pseudarcicella hirudinis] >SFQ32372.1 cystathionine gamma-synthase [Pseudarcicella hirudinis])

HSP 1 Score: 303.9 bits (777), Expect = 8.300e-79
Identity = 176/439 (40.09%), Postives = 242/439 (55.13%), Query Frame = 0
Query:   12 IETILAQAGIRYQEITSISSRDIIPPLHLSTTFERDIDGTYSNGFVYSRHDHPTRALLEKGGSNAERRKIHFSNPSLPPSLPLFFLPVMTDIEEGAEWSAAFASGMQAATVLLQAFGANAYLILPNDLYQGIRILVRSTFEEWGLRNECVDMTDLGAVKEIMDRVFADAGTSRVLVWMESPSNPLLKVTDVRAIVALARHYSKKHGKDFLSILDTTWHSPFLLQALLPLGIDITYGSATKFLGGHSDLLAGVITGRKRKALVSGGGGMVDLEIPVRHLQQTMGGGLAPFDCWLLLRGLKTLPCRMRTHCENAQKLSRFFETHPRISVVHFPGLESHPGHGLHRAMMRKEGMDGSMLSIQMKGEEGGTEDETAVEEEVFKVLARLKIFRRATSLGATESLCEHRRSVEGPLSQTPRNLVRISVGLEGYEDLEEDWRQALS 451
            IET LA    R+++  + S   +  P+ LSTTFER+ DG+Y+NG++Y+R D+P R  LEK  ++ E   + F                            AFASGMQA T L Q+     ++I PND Y    +L++  F  WGL    VDMT+        + + A    +  LVW+E+PSNP LK++D+ AI A+A      H  D L ++D TW SP + Q  L L  DI   S TK+ GGHSD+L G +  +K   L             +R +Q+  GG  +PFDCWL+ RG+KTLP R++   ENA KLS F E HP I  VH+PGL SHP + + +  M      G+MLS+Q+KG           E++  ++  +LK+F  ATSLG  ESL EHR+SVEG  S TP NL+R+SVGLE  +D+ EDW  AL+
Sbjct:    3 IET-LAITSTRFEDKNAGS---VASPIFLSTTFERETDGSYANGYIYTRADNPNRQTLEKSIASLENGAVGF----------------------------AFASGMQATTALFQSLEPGNHIITPNDAYFATNVLIQEVFSRWGLEMTMVDMTN-------PENIRAAIRPNTRLVWIETPSNPQLKISDITAIAAIA------HENDALCVVDNTWASP-VGQQPLNLDADIVMHSTTKYFGGHSDVLGGALVLKKDNELAQ----------KLRDIQKLTGGVPSPFDCWLITRGIKTLPLRVKAQTENAYKLSLFLENHPEIEAVHYPGLPSHPQYAIAKKQMLG---FGAMLSVQVKGN----------EQKAMEITGKLKLFTTATSLGGVESLVEHRKSVEGIHSSTPENLLRVSVGLENIDDMIEDWNNALA 372          
BLAST of NO29G00890 vs. NCBI_GenBank
Match: WP_087459148.1 (aminotransferase class V-fold PLP-dependent enzyme [Tumebacillus avium] >ARU63819.1 cystathionine gamma-synthase [Tumebacillus avium])

HSP 1 Score: 298.1 bits (762), Expect = 4.600e-77
Identity = 170/416 (40.87%), Postives = 235/416 (56.49%), Query Frame = 0
Query:   34 IIPPLHLSTTFERDIDGTYSNGFVYSRHDHPTRALLEKGGSNAERRKIHFSNPSLPPSLPLFFLPVMTDIEEGAEWSAAFASGMQAATVLLQAFGANAYLILPNDLYQGIRILVRSTFEEWGLRNECVDMTDLGAVKEIMDRVFADAGTSRVLVWMESPSNPLLKVTDVRAIVALARHYSKKHGKDFLSILDTTWHSPFLLQALLPLGIDITYGSATKFLGGHSDLLAGVITGRKRKALVSGGGGMVDLEIPVRHLQQTMGGGLAPFDCWLLLRGLKTLPCRMRTHCENAQKLSRFFETHPRISVVHFPGLESHPGHGLHRAMMRKEGMDGSMLSIQMKGEEGGTEDETAVEEEVFKVLARLKIFRRATSLGATESLCEHRRSVEGPLSQTPRNLVRISVGLEGYEDLEEDWRQAL 450
            +  P++LSTTFER+ DG++  G+VYSR  +P RA LE                             M+ +EEGA  + AFASG  A   + QA    A++I P D+Y G ++ ++  F  WGL+   +DM+DL A+K       A    +  LVW+E+PSNPLLK+TD+ A+ A+A      H      ++D TW +P LLQ+   LG D+   S+TK+LGGHSD+L GV+  +             D    +R LQ   G   +PFDCWL+LRG++TLP RMR H +NA ++++F + HPR+  V +PGL  HPGH +    M+     G MLS+Q+ G            +    V AR++IF RATSLG TESL EHR S+EGP S+TP NL+R+SVGLE  +DL  D  QAL
Sbjct:   21 VAQPIYLSTTFEREADGSFPAGYVYSRSANPNRAALE---------------------------TCMSSLEEGAS-AIAFASGSAATMSVFQALSPGAHVIAPEDVYYGTKLQLQDIFARWGLQASFIDMSDLEALK-------AACRPNTELVWIETPSNPLLKITDISAVAAIA------HEAGARVVVDNTWATP-LLQSPFELGADLIMHSSTKYLGGHSDVLGGVLVAKVED----------DFTRSIRALQGAGGAVPSPFDCWLVLRGIQTLPWRMRAHSDNAGRVAQFLQEHPRVERVFYPGLPEHPGHEIAAGQMKG---FGGMLSVQITGG----------ADAAMSVAARVQIFTRATSLGGTESLLEHRASIEGPASKTPPNLLRVSVGLEHADDLIADLEQAL 371          
BLAST of NO29G00890 vs. NCBI_GenBank
Match: WP_026996702.1 (aminotransferase class V-fold PLP-dependent enzyme [Flectobacillus major])

HSP 1 Score: 297.7 bits (761), Expect = 6.000e-77
Identity = 168/438 (38.36%), Postives = 244/438 (55.71%), Query Frame = 0
Query:   12 IETILAQAGIRYQEITSISSRDIIPPLHLSTTFERDIDGTYSNGFVYSRHDHPTRALLEKGGSNAERRKIHFSNPSLPPSLPLFFLPVMTDIEEGAEWSAAFASGMQAATVLLQAFGANAYLILPNDLYQGIRILVRSTFEEWGLRNECVDMTDLGAVKEIMDRVFADAGTSRVLVWMESPSNPLLKVTDVRAIVALARHYSKKHGKDFLSILDTTWHSPFLLQALLPLGIDITYGSATKFLGGHSDLLAGVITGRKRKALVSGGGGMVDLEIPVRHLQQTMGGGLAPFDCWLLLRGLKTLPCRMRTHCENAQKLSRFFETHPRISVVHFPGLESHPGHGLHRAMMRKEGMDGSMLSIQMKGEEGGTEDETAVEEEVFKVLARLKIFRRATSLGATESLCEHRRSVEGPLSQTPRNLVRISVGLEGYEDLEEDWRQAL 450
            IET+     I+  ++T  ++  +  P++LSTT+ER+ DG+Y++G++YSR+D+P R LLEK  +  E  ++ F                            AFASGM A T L QAF +  ++I P+D Y    +L+   F  WGL    VDMTDL A+K+ +         +  L+W+ESPSNP LK++D++AI  LA      HG   L  +D TW +P ++Q  L LG DI   S TK+ GGH D+L G +  ++   L S           +R++Q+  G   +PF+CWL+ RG+KTL  R++    NA+ L+ +   HP+I  VH+PGL SHP + + +  M      G+MLS+Q+KG+           +    +  +L +F  ATSLG  ESL EHR+S+EGP S TP NL+R+SVGLE  EDL  DW QAL
Sbjct:    3 IETL----AIKSTQMTDSNAGAVASPIYLSTTYERETDGSYAHGYIYSRNDNPNRQLLEKSIALLENGQVGF----------------------------AFASGMAATTALFQAFKSGDHIITPDDAYFATNVLIEEVFGGWGLSLTKVDMTDLTAIKQAI-------RPNTRLIWIESPSNPQLKISDIQAISELA------HGVGALCAVDNTWATP-IIQRPLDLGADIVMHSTTKYFGGHGDVLGGALVVKEDVYLAS----------KLRNIQKLTGAVPSPFECWLVARGIKTLALRVKAQTANAKALADYLNQHPQIEAVHYPGLPSHPQYAIAQKQMSD---TGAMLSVQIKGD----------AQNAMNITGKLALFTTATSLGGVESLIEHRKSIEGPTSLTPDNLLRVSVGLENIEDLIADWEQAL 371          
BLAST of NO29G00890 vs. NCBI_GenBank
Match: PLS81242.1 (cystathionine gamma-synthase [Chloroflexi bacterium])

HSP 1 Score: 297.4 bits (760), Expect = 7.800e-77
Identity = 184/441 (41.72%), Postives = 245/441 (55.56%), Query Frame = 0
Query:   11 SIETILAQAGIRYQEITSISSRDIIPPLHLSTTFERDIDGTYSNGFVYSRHDHPTRALLEKGGSNAERRKIHFSNPSLPPSLPLFFLPVMTDIEEGAEWSAAFASGMQAATVLLQAFGANAYLILPNDLYQGIRILVRSTFEEWGLRNECVDMTDLGAVKEIMDRVFADAGTSRVLVWMESPSNPLLKVTDVRAIVALARHYSKKHGKDFLSILDTTWHSPFLLQALLPLGIDITYGSATKFLGGHSDLLAGVITGRKRKALVSGGGGMVDLEIPVRHLQQTMGGGLAPFDCWLLLRGLKTLPCRMRTHCENAQKLSRFFETHPRISVVHFPGLESHPGHGLHRAMMRKEGMDGSMLSIQMKGEEGGTEDETAVEEEVFKVLARLKIFRRATSLGATESLCEHRRSVEGPLSQTPRNLVRISVGLEGYEDLEEDWRQALSE 452
            +IETI   AG   QEI   ++  +IPP++LSTTFER  DG++ +G +Y R+ +P R +LE+                            +T +E GA+  AAF+SG+ A   + QA     ++I P+D Y G+  L+R     WGL    VDMTD+ AV+       A       LVW+E+PSNP LKV D+ AI A+A      H    L ++D TW SP + Q  L LG D+   S TK+LGGHSDLL G +  R+   +             VR LQ   G   APFDCWLLLRG++TL  R+R H E+A ++++F   HPRI  VH+PGLE+HPGH +    MR     G MLSI+++G E               + ARL+IF RATSLG  ESL EHR SVEGP S+TP  L+R+SVGLE  +DL  D +QAL +
Sbjct:    2 NIETIAIHAG---QEIDP-TTGSVIPPIYLSTTFERAEDGSFPHGNLYIRNGNPNRTMLER---------------------------CLTALEGGAD-CAAFSSGLAATMSIFQALQPGDHVIAPDDAYHGVSRLLREIMAPWGLNYTVVDMTDVAAVQ-------AAVQPQTRLVWIETPSNPQLKVADIAAIAAVA------HEAAALCVVDNTWASP-IQQRPLELGADLVLHSTTKYLGGHSDLLGGAVVTRELSPIWE----------RVRFLQANGGAVPAPFDCWLLLRGIQTLAYRVRAHAEHALRIAQFLACHPRIERVHYPGLETHPGHAVAVRQMRG---FGGMLSIEVRGGEAA----------AMALAARLQIFTRATSLGGIESLIEHRASVEGPESKTPPGLLRVSVGLEHPDDLIADLKQALGD 373          
BLAST of NO29G00890 vs. NCBI_GenBank
Match: WP_012626738.1 (aminotransferase class V-fold PLP-dependent enzyme [Cyanothece sp. PCC 7425] >ACL43644.1 Cystathionine gamma-synthase [Cyanothece sp. PCC 7425])

HSP 1 Score: 295.8 bits (756), Expect = 2.300e-76
Identity = 174/438 (39.73%), Postives = 238/438 (54.34%), Query Frame = 0
Query:   12 IETILAQAGIRYQEITSISSRDIIPPLHLSTTFERDIDGTYSNGFVYSRHDHPTRALLEKGGSNAERRKIHFSNPSLPPSLPLFFLPVMTDIEEGAEWSAAFASGMQAATVLLQAFGANAYLILPNDLYQGIRILVRSTFEEWGLRNECVDMTDLGAVKEIMDRVFADAGTSRVLVWMESPSNPLLKVTDVRAIVALARHYSKKHGKDFLSILDTTWHSPFLLQALLPLGIDITYGSATKFLGGHSDLLAGVITGRKRKALVSGGGGMVDLEIPVRHLQQTMGGGLAPFDCWLLLRGLKTLPCRMRTHCENAQKLSRFFETHPRISVVHFPGLESHPGHGLHRAMMRKEGMDGSMLSIQMKGEEGGTEDETAVEEEVFKVLARLKIFRRATSLGATESLCEHRRSVEGPLSQTPRNLVRISVGLEGYEDLEEDWRQAL 450
            IET++   G      T      IIPP+HLSTTFER  DG+Y +G++Y+R  +P R  LE                             +  +E GA  +  FASG  A   L         +I+P  +Y G   L+R+ F  WGL    V+MTDL  V++ +        T   L+W+E+PSNPLL++TD+  + A+A      H  + L + D TW +P LLQ  L LG D    ++TK+LGGHSD+L GV   ++            D    VRH Q T G   +PFDCWLLLRG++TL CRMRTHCENA +++ F   HP++  VH+PGL SHP H L +  M +    G M+S Q+KG+           E+   V A++++F RATSLG  ESL EHR S+EGP ++TP NL+R+S+GLE  +DL  D  QAL
Sbjct:    3 IETLVVHGGGEVDPATGA----IIPPIHLSTTFERQADGSYPHGYIYTRSGNPNRTALEN---------------------------CLAALEGGA-GAITFASGAAATMSLFHCLSPGDQVIVPRQMYHGTTQLLRNIFIPWGLTVAVVEMTDLAQVEQALQ-------TRTKLIWVETPSNPLLQITDIARVAAIA------HQANALCVCDNTWATP-LLQHPLDLGADWVIHASTKYLGGHSDVLGGVAIAKQTD----------DFYQRVRHYQITGGAVPSPFDCWLLLRGIRTLACRMRTHCENAAQIATFLSHHPQVEAVHYPGLPSHPDHALAQQQMTQ---FGGMVSFQVKGK----------GEKAKAVAAQVQLFTRATSLGGMESLIEHRASIEGPGTETPDNLLRLSLGLEHPQDLIADLGQAL 371          
BLAST of NO29G00890 vs. NCBI_GenBank
Match: WP_014065890.1 (cystathionine gamma-synthase [Rhodothermus marinus] >AEN72114.1 Cys/Met metabolism pyridoxal-phosphate-dependent protein [Rhodothermus marinus SG0.5JP17-172])

HSP 1 Score: 294.7 bits (753), Expect = 5.000e-76
Identity = 175/445 (39.33%), Postives = 244/445 (54.83%), Query Frame = 0
Query:    7 PKKASIETILAQAGIRYQEITSISSRDIIPPLHLSTTFERDIDGTYSNGFVYSRHDHPTRALLEKGGSNAERRKIHFSNPSLPPSLPLFFLPVMTDIEEGAEWSAAFASGMQAATVLLQAFGANAYLILPNDLYQGIRILVRSTFEEWGLRNECVDMTDLGAVKEIMDRVFADAGTSRVLVWMESPSNPLLKVTDVRAIVALARHYSKKHGKDFLSILDTTWHSPFLLQALLPLGIDITYGSATKFLGGHSDLLAGVITGRKRKALVSGGGGMVDLEIPVRHLQQTMGGGLAPFDCWLLLRGLKTLPCRMRTHCENAQKLSRFFETHPRISVVHFPGLESHPGHGLHRAMMRKEGMDGSMLSIQMKGEEGGTEDETAVEEEVFKVLARLKIFRRATSLGATESLCEHRRSVEGPLSQTPRNLVRISVGLEGYEDLEEDWRQALSE 452
            P++  ++T+LA+AG      T      ++ P +LSTTFERD DG+Y  G++YSRHD+PTR  LE   +                              EG +  A FASGM AAT LLQA   ++++++P+D+Y G+R L+ + F   GL     D TDL AV+       A    +  L+W E+PSNPLLK+TD+  +  LA      H      ++D+TW +P  +Q  L LG D+   S TK+L GHSD++ G +  R+            D    VR +QQT G  L PF  WL LRGL+TL  R++  CENA++L+ F   HPR+  V++PGL  HPGH + R  M      G+MLS ++ G+           E+   V AR ++F RATSLG TESL EHR S+E P ++TP NL+R+SVGLE  +DL  D  QAL +
Sbjct:    3 PRELHLDTLLAKAGCAPDPATGA----VVSPPYLSTTFERDPDGSYPRGYIYSRHDNPTRHQLESTLAQL----------------------------EGGQDCATFASGMAAATALLQALEPDSHVLIPDDIYYGVRNLLENVFANQGLHYSTADFTDLEAVR-------AALRPNTRLIWAETPSNPLLKITDLAELARLA------HEAGARLVVDSTW-APPPVQRPLDLGADLVLHSLTKYLSGHSDVMGGALIAREAD----------DFFARVRMIQQTAGAVLDPFSAWLTLRGLRTLAVRLQRQCENARRLAAFLRDHPRVVRVYYPGLPEHPGHEIARRQMWD---FGAMLSFEIDGD----------AEQALAVAARTRVFVRATSLGGTESLIEHRASIETPPTRTPPNLLRLSVGLEHVDDLLADLSQALED 378          
BLAST of NO29G00890 vs. NCBI_GenBank
Match: WP_007931135.1 (MULTISPECIES: aminotransferase class V-fold PLP-dependent enzyme [Pelosinus] >EIW20352.1 Cys/Met metabolism pyridoxal-phosphate-dependent protein [Pelosinus fermentans B4] >EIW25589.1 Cys/Met metabolism pyridoxal-phosphate-dependent protein [Pelosinus fermentans A11] >OAM93311.1 Cys/Met metabolism pyridoxal-phosphate-dependent protein [Pelosinus fermentans DSM 17108] >SDQ73542.1 cystathionine gamma-synthase [Pelosinus fermentans])

HSP 1 Score: 294.7 bits (753), Expect = 5.000e-76
Identity = 166/416 (39.90%), Postives = 230/416 (55.29%), Query Frame = 0
Query:   34 IIPPLHLSTTFERDIDGTYSNGFVYSRHDHPTRALLEKGGSNAERRKIHFSNPSLPPSLPLFFLPVMTDIEEGAEWSAAFASGMQAATVLLQAFGANAYLILPNDLYQGIRILVRSTFEEWGLRNECVDMTDLGAVKEIMDRVFADAGTSRVLVWMESPSNPLLKVTDVRAIVALARHYSKKHGKDFLSILDTTWHSPFLLQALLPLGIDITYGSATKFLGGHSDLLAGVITGRKRKALVSGGGGMVDLEIPVRHLQQTMGGGLAPFDCWLLLRGLKTLPCRMRTHCENAQKLSRFFETHPRISVVHFPGLESHPGHGLHRAMMRKEGMDGSMLSIQMKGEEGGTEDETAVEEEVFKVLARLKIFRRATSLGATESLCEHRRSVEGPLSQTPRNLVRISVGLEGYEDLEEDWRQAL 450
            I PP+HLSTTFERD DG+Y  G+VYSR  +P R  LEK                                 EG E +AAF+SG+ A   + QA     ++I+  DLY G   +++   E WGL+   VD+ D   V+ ++        ++  ++++E+PSNPLLK+TD+ A+ A+A      H    L + D TW +P +LQ  L LG DI   S TK+ GGHSD+L G +  + + A              +R LQQ  G   APFDCWL+LRG++TL CRM+ H ENA ++++F + HPR+  V++PGL  HPGH +   ++R+    G MLS Q++G            +E    + RLKI +RATSLG  ESL EHR S+EGP S+TP NL+R SVGLE  +DL  D   AL
Sbjct:   21 IAPPIHLSTTFERDADGSYPRGYVYSRLSNPNRDALEKCLCGL----------------------------EGGEGAAAFSSGLAAILNVFQALLPGDHVIVSQDLYHGTTRILQDILEPWGLQVSYVDVNDFSQVRAVIK-------SNTKIIYLETPSNPLLKITDISALSAIA------HEAGALCVCDNTWPTP-MLQRPLELGADIVVHSTTKYFGGHSDVLGGAVISKVKDAFFD----------KIRMLQQIGGAVPAPFDCWLVLRGIQTLNCRMKNHSENALEIAKFLQKHPRVEKVYYPGLVDHPGHDI---VLRQMSQFGGMLSFQVRGN----------RDEALAFIGRLKIIQRATSLGGVESLIEHRASIEGPQSKTPDNLLRFSVGLENIDDLIADLNTAL 371          
BLAST of NO29G00890 vs. NCBI_GenBank
Match: WP_007957136.1 (aminotransferase class V-fold PLP-dependent enzyme [Pelosinus fermentans] >AJQ26529.1 Cystathionine gamma-lyase [Pelosinus fermentans JBW45])

HSP 1 Score: 294.3 bits (752), Expect = 6.600e-76
Identity = 167/416 (40.14%), Postives = 227/416 (54.57%), Query Frame = 0
Query:   34 IIPPLHLSTTFERDIDGTYSNGFVYSRHDHPTRALLEKGGSNAERRKIHFSNPSLPPSLPLFFLPVMTDIEEGAEWSAAFASGMQAATVLLQAFGANAYLILPNDLYQGIRILVRSTFEEWGLRNECVDMTDLGAVKEIMDRVFADAGTSRVLVWMESPSNPLLKVTDVRAIVALARHYSKKHGKDFLSILDTTWHSPFLLQALLPLGIDITYGSATKFLGGHSDLLAGVITGRKRKALVSGGGGMVDLEIPVRHLQQTMGGGLAPFDCWLLLRGLKTLPCRMRTHCENAQKLSRFFETHPRISVVHFPGLESHPGHGLHRAMMRKEGMDGSMLSIQMKGEEGGTEDETAVEEEVFKVLARLKIFRRATSLGATESLCEHRRSVEGPLSQTPRNLVRISVGLEGYEDLEEDWRQAL 450
            I PP+HLSTTFERD DG+Y  G VYSR  +P R  LEK                                 EG E +AAF+SG+ A   + QA     ++++  DLY G   ++R   E WGL+   VD+ D   V+ ++         +  ++++E+PSNPLLK+TD+ A+ A+A      H    L + D TW +P +LQ  L LG DI   S TK+ GGHSD+L G +  + + A              +R LQQ  G   APFDCWL+LRG++TL CRM+ H ENA +++ F + HPRI  V++PGL  HPGH +   ++R+    G MLS Q++G            E+    + RLKI +RATSLG  ESL EHR S+EGP S+TP NL+R SVGLE  +DL  D   AL
Sbjct:   21 IAPPIHLSTTFERDADGSYPRGHVYSRLSNPNRDALEKCLCGL----------------------------EGGEGAAAFSSGLAAILNVFQALLPGDHVVVSQDLYHGTTRILRDILEPWGLQVSYVDVNDFSQVRTVIK-------ANTKIIYLETPSNPLLKITDISALSAIA------HEAGALCVCDNTWPTP-ILQRPLELGADIVVHSTTKYFGGHSDVLGGAVISKVKDAFFD----------KIRMLQQIGGAVPAPFDCWLVLRGIQTLSCRMKNHSENALEIANFLQKHPRIEKVYYPGLVDHPGHDI---VLRQMSQFGGMLSFQVRGN----------REDALAFIGRLKIIQRATSLGGVESLIEHRASIEGPQSKTPDNLLRFSVGLENIDDLIADLNDAL 371          
BLAST of NO29G00890 vs. NCBI_GenBank
Match: WP_106175498.1 (aminotransferase class V-fold PLP-dependent enzyme [filamentous cyanobacterium CCP2] >PSB07836.1 cystathionine gamma-synthase [filamentous cyanobacterium CCP2])

HSP 1 Score: 294.3 bits (752), Expect = 6.600e-76
Identity = 171/438 (39.04%), Postives = 232/438 (52.97%), Query Frame = 0
Query:   12 IETILAQAGIRYQEITSISSRDIIPPLHLSTTFERDIDGTYSNGFVYSRHDHPTRALLEKGGSNAERRKIHFSNPSLPPSLPLFFLPVMTDIEEGAEWSAAFASGMQAATVLLQAFGANAYLILPNDLYQGIRILVRSTFEEWGLRNECVDMTDLGAVKEIMDRVFADAGTSRVLVWMESPSNPLLKVTDVRAIVALARHYSKKHGKDFLSILDTTWHSPFLLQALLPLGIDITYGSATKFLGGHSDLLAGVITGRKRKALVSGGGGMVDLEIPVRHLQQTMGGGLAPFDCWLLLRGLKTLPCRMRTHCENAQKLSRFFETHPRISVVHFPGLESHPGHGLHRAMMRKEGMDGSMLSIQMKGEEGGTEDETAVEEEVFKVLARLKIFRRATSLGATESLCEHRRSVEGPLSQTPRNLVRISVGLEGYEDLEEDWRQAL 450
            IET+    G        +++  +  P++LSTTFER+ DG+Y +GF Y R  +P R +LE                                  EG   +AAFASG  A   + QA     ++I P D Y G   L+RS F  WGL    VDMTD+  VK+ +         +  L+W+E+PSNPLLKVTD+  +  +A      H  + +   D TW SPF LQ     G+D+   S TK+LGGHSD+L G +  ++            D    +R +Q   G   +PFDCWL+LRG++TLPCRMRTH  NA K++ F + HP I  VH+PGL  HPGH +  A  +     G MLS+Q+KG+           E  F VLA++ +F RATSLG  ESL EHR S+EG  ++TP NL+R+S+GLE  +DL  D  QAL
Sbjct:    3 IETLAIHGG----RSVDLATGAVATPIYLSTTFEREPDGSYPHGFEYIRSGNPNRKMLED----------------------------CLAALEGGSVAAAFASGSAATASVFQALAPGDHVIAPEDAYTGTGTLLRSIFAPWGLAVTFVDMTDVEQVKQAVH-------PNTRLIWIETPSNPLLKVTDIAKVATIA------HQANAICACDNTWASPF-LQRPFQQGVDLVVHSTTKYLGGHSDVLGGAVVAQQDS----------DFFQRIRQVQTAGGAVASPFDCWLVLRGIQTLPCRMRTHAANALKIATFLDQHPAIEAVHYPGLPHHPGHTI--ATQQMSNGYGGMLSVQVKGD----------RERAFSVLAKMSLFTRATSLGGVESLIEHRASIEGAGTKTPDNLLRLSIGLEHGDDLIADLEQAL 372          
The following BLAST results are available for this feature:
BLAST of NO29G00890 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM21308.14.300e-15259.30cystathionine gamma-synthase [Nannochloropsis gadi... [more]
WP_092019013.18.300e-7940.09aminotransferase class V-fold PLP-dependent enzyme... [more]
WP_087459148.14.600e-7740.87aminotransferase class V-fold PLP-dependent enzyme... [more]
WP_026996702.16.000e-7738.36aminotransferase class V-fold PLP-dependent enzyme... [more]
PLS81242.17.800e-7741.72cystathionine gamma-synthase [Chloroflexi bacteriu... [more]
WP_012626738.12.300e-7639.73aminotransferase class V-fold PLP-dependent enzyme... [more]
WP_014065890.15.000e-7639.33cystathionine gamma-synthase [Rhodothermus marinus... [more]
WP_007931135.15.000e-7639.90MULTISPECIES: aminotransferase class V-fold PLP-de... [more]
WP_007957136.16.600e-7640.14aminotransferase class V-fold PLP-dependent enzyme... [more]
WP_106175498.16.600e-7639.04aminotransferase class V-fold PLP-dependent enzyme... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL061nonsL061Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR038ncniR038Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR081ngnoR081Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005209NSK005209Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO29G00890.2NO29G00890.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO29G00890.1NO29G00890.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601360gene_8261Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100535g3gene9114Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO29G00890.2NO29G00890.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO29G00890.1NO29G00890.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO29G00890 ID=NO29G00890|Name=NO29G00890|organism=Nannochloropsis oceanica|type=gene|length=1837bp
TGGGAATGAGTGTGGGGTGGAAATGCTTCAGTGTAGCAGCTGGGGCTCAA
CATCGCCAACAGCAAGCTACGTTGCGTAGTTGCGTCATGCGCCTTCTCAT
GGTCTCATTTTGTCTCTCCCTGCGTATATTGGAGCACCAGACTTCATTCC
AGACGCTGGATATAGTTGTATTGACTTGGTGTGGAATTCAGATATCCATT
CCCTGAAGTTCTTGTGGCATAATTATTGCGCTATCCTCTCATCTAACCTC
CCCCTCATATCAGAGTAGCTTCCACCATGTCTGCCGCCAATCTTCCTAAA
AAAGCAAGCATTGAAACCATCCTTGCTCAAGCAGGGATCCGCTACCAGGA
GATTACTAGCATCTCCTCCCGCGATATAATTCCGCCCCTCCACCTCTCGA
CTACCTTTGAACGCGACATCGACGGAACCTACTCTAATGGATTTGTCTAT
TCGCGGCATGACCATCCCACGCGGGCTTTGTTGGAGAAAGgtgggtcaaa
tgcagagagaagaaagatacatttctctaacccttccctccctccctccc
tccctcttttcttccttccagTCATGACAGACATTGAAGAAGGTGCCGAG
TGGTCCGCTGCCTTTGCTAGCGGGATGCAAGCAGCCACTGTGCTCCTTCA
AGCTTTTGGCGCGAATGCCTATTTGATTCTACCGAATGACCTTTACCAAG
GTATCCGTATCCTCGTGCGGTCGACTTTTGAAGAGTGGGGGTTAAGGAAT
GAGTGTGTAGATATGACAGACCTAGGAGCAGTAAAAGAGATAATGGACCG
AGTATTCGCTGATGCAGGAACAAGCAGGGTCTTGGTGTGGATGGAGAGTC
CCTCCAATCCTCTCTTGAAGgtaggcaaggagggagggaagaaggaagga
agaggaagtgagggcggaaataaaatagacgaaaggcagccatgcgtcat
tttctccttctccttctccctcattcctttcttcagGTCACTGATGTCCG
GGCAATTGTGGCCCTTGCAAGGCATTATAGCAAGAAGCACGGGAAAGATT
TTTTGTCCATCCTTGACACCACCTGGCACTCGCCCTTCCTCCTTCAAGCC
CTCCTTCCCCTCGGTATCGACATCACGTACGGAAGTGCCACCAAATTCCT
CGGCGGTCATTCCGACCTCCTGGCCGGTGTTATTACGGGTCGAAAACGCA
AGGCCTTAGTGAGCGGAGGGGGCGGAATGGTGGATCTAGAGATACCTGTA
CGTCACTTGCAACAAACCATGGGAGGGGGGCTCGCGCCGTTCGATTGCTG
GTTGCTTCTGAGGGGGCTGAAGACCCTTCCTTGTCGAATGCGGACACATT
GCGAGAACGCACAGAAATTGAGTCGATTTTTTGAGACTCACCCGCGAATC
AGCGTCGTACATTTCCCGGGGTTGGAGTCTCACCCCGGTCATGGGTTGCA
CAGAGCGATGATGAGGAAGGAAGGGATGGATGGGAGCATGCTCTCGATAC
AGATGAAAGGTGAAGAGGGCGGGACGGAGGACGAGACAGCAGTGGAAGAA
GAAGTGTTTAAGGTATTGGCCAGGCTGAAGATCTTTCGGAGGGCGACCTC
GTTGGGAGCCACGGAGAGTTTGTGTGAGCATAGAAGGAGCGTGGAGGGGC
CTTTGAGTCAAACGCCGCGGAACTTGGTTAGGATTAGTGTGGGATTGGAG
GGGTATGAAGACTTGGAGGAGGACTGGCGACAGGCGTTGAGTGAAGAAGG
GAGTTGAAGAGGAAGAAAAGGAGGAGGAGGAGGTGGAGGTGGAGTGATTC
GAAGGGGGGGAGGCTGGACTGCTTGTTAAAAGGGGGG
back to top

protein sequence of NO29G00890.2

>NO29G00890.2-protein ID=NO29G00890.2-protein|Name=NO29G00890.2|organism=Nannochloropsis oceanica|type=polypeptide|length=455bp
MSAANLPKKASIETILAQAGIRYQEITSISSRDIIPPLHLSTTFERDIDG
TYSNGFVYSRHDHPTRALLEKGGSNAERRKIHFSNPSLPPSLPLFFLPVM
TDIEEGAEWSAAFASGMQAATVLLQAFGANAYLILPNDLYQGIRILVRST
FEEWGLRNECVDMTDLGAVKEIMDRVFADAGTSRVLVWMESPSNPLLKVT
DVRAIVALARHYSKKHGKDFLSILDTTWHSPFLLQALLPLGIDITYGSAT
KFLGGHSDLLAGVITGRKRKALVSGGGGMVDLEIPVRHLQQTMGGGLAPF
DCWLLLRGLKTLPCRMRTHCENAQKLSRFFETHPRISVVHFPGLESHPGH
GLHRAMMRKEGMDGSMLSIQMKGEEGGTEDETAVEEEVFKVLARLKIFRR
ATSLGATESLCEHRRSVEGPLSQTPRNLVRISVGLEGYEDLEEDWRQALS
EEGS*
back to top

protein sequence of NO29G00890.1

>NO29G00890.1-protein ID=NO29G00890.1-protein|Name=NO29G00890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=428bp
MSAANLPKKASIETILAQAGIRYQEITSISSRDIIPPLHLSTTFERDIDG
TYSNGFVYSRHDHPTRALLEKVMTDIEEGAEWSAAFASGMQAATVLLQAF
GANAYLILPNDLYQGIRILVRSTFEEWGLRNECVDMTDLGAVKEIMDRVF
ADAGTSRVLVWMESPSNPLLKVTDVRAIVALARHYSKKHGKDFLSILDTT
WHSPFLLQALLPLGIDITYGSATKFLGGHSDLLAGVITGRKRKALVSGGG
GMVDLEIPVRHLQQTMGGGLAPFDCWLLLRGLKTLPCRMRTHCENAQKLS
RFFETHPRISVVHFPGLESHPGHGLHRAMMRKEGMDGSMLSIQMKGEEGG
TEDETAVEEEVFKVLARLKIFRRATSLGATESLCEHRRSVEGPLSQTPRN
LVRISVGLEGYEDLEEDWRQALSEEGS*
back to top
Synonyms
Publications