NO29G00810, NO29G00810 (gene) Nannochloropsis oceanica

Overview
NameNO29G00810
Unique NameNO29G00810
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length831
Alignment locationchr29:298558..299388 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr29genomechr29:298558..299388 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO29G00810 vs. NCBI_GenBank
Match: EWM21305.1 (hypothetical protein Naga_100350g3 [Nannochloropsis gaditana])

HSP 1 Score: 127.9 bits (320), Expect = 3.400e-26
Identity = 62/91 (68.13%), Postives = 76/91 (83.52%), Query Frame = 0 
Query:   44 SSLPP---PPSET----DLDRLGRDLSACVLEQYVFTVVGIGLGTGLGVYRRSLLPLVAFGAVGSLGDLAYGLGWACKGKFDAYKACRNRV 128
            SS PP   PPS+T    +LD LGRDLS CVLEQYVFT++GIGLGTG+ V+R+S  PLVA+GA GS+GDL YGLG+ACKG++DAYKACRN++
Sbjct:    4 SSSPPASSPPSDTATESELDVLGRDLSGCVLEQYVFTIMGIGLGTGMSVHRKSFFPLVAWGAAGSIGDLMYGLGYACKGQYDAYKACRNKL 94
The following BLAST results are available for this feature:
BLAST of NO29G00810 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21305.13.400e-2668.13hypothetical protein Naga_100350g3 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL061nonsL061Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR038ncniR038Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR081ngnoR081Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005201NSK005201Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO29G00810.1NO29G00810.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601334gene_8254Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100350g3gene9119Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO29G00810.1NO29G00810.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO29G00810 ID=NO29G00810|Name=NO29G00810|organism=Nannochloropsis oceanica|type=gene|length=831bp
GGGAACTTGCCTTATCTGCGGAACAAGCGGATGCGGCGACGCGCGGCGAC
GGCGGCGACGACATGAGCAAGCAACGGACACAAGACCGCTAAATTTGATT
TCAGAGCAAATTCACAACTCTTATACAAAGGGATCACTTCGGGCATCCTT
TGCACGGCGACGGAGGATAAAGAGGCACTGGCTGAGTCCTGACATGTACC
CAGAAACGACGAAACTAACCTCCTCTCCCCCTTTTTTCCTTTTCCCCACT
GTTCTCATCCCCTGCCTCAGCCTCTTCCACGCGCACCCTCACGAAGGCAG
TCGCAAACCAATGGAGTCGTCCTCCTCTCTTCCTCCACCACCAAGCGAGA
CCGACCTCGACCGCCTCGGCCGTGACCTTTCTGCATGCGTCCTAGAACAA
TACGTCTTCACCGTCGTAGGCATCGGGCTAGGCACTGGTCTCGGCGTCTA
TCGCAGGAGCCTCTTGCCCCTTGTTGCCTTCGGTGCCGTGGGCAGCTTGG
GTGACTTAGCCTATGGGTTAGGTTGGGCATGTAAAGGAAAATTTGATGCG
TACAAGGCATGTAGGAATCGAGTGCAGCCTCTAATCATACCACCACCACG
GGTTCCGCCGCCGTTTCCATTACAGTCACAGCCAGACACTTCCTCCTCAT
CCTCTTCTCCGCCCCCCACGTCTTTGTCCTCATCATCCACTTGGTTTAGG
GTCTCGTCATCGTCGACTCCGCCGGCGCCGAAAGTAGGAAAGTCAAGAGC
AGAAAAAGATTGAACGAGTTTTTAAAGATTATGCAGCGATTGTATGGAGA
GATCCAAAGCCAAAATTGTACGTGCGCGGAT
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protein sequence of NO29G00810.1

>NO29G00810.1-protein ID=NO29G00810.1-protein|Name=NO29G00810.1|organism=Nannochloropsis oceanica|type=polypeptide|length=190bp
MYPETTKLTSSPPFFLFPTVLIPCLSLFHAHPHEGSRKPMESSSSLPPPP
SETDLDRLGRDLSACVLEQYVFTVVGIGLGTGLGVYRRSLLPLVAFGAVG
SLGDLAYGLGWACKGKFDAYKACRNRVQPLIIPPPRVPPPFPLQSQPDTS
SSSSSPPPTSLSSSSTWFRVSSSSTPPAPKVGKSRAEKD*
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Synonyms
Publications