NO29G00810.1, NO29G00810.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO29G00810.1
Unique NameNO29G00810.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length831
Alignment locationchr29:298558..299388 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr29genomechr29:298558..299388 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO29G00810.1 vs.
Match: EWM21305.1 (hypothetical protein Naga_100350g3 [Nannochloropsis gaditana])

HSP 1 Score: 132.5 bits (332), Expect = 1.400e-27
Identity = 66/103 (64.08%), Postives = 81/103 (78.64%), Query Frame = 0 
Query:   44 SSLPP---PPSET----DLDRLGRDLSACVLEQYVFTVVGIGLGTGLGVYRRSLLPLVAFGAVGSLGDLAYGLGWACKGKFDAYKACRNRVQPLIIPPPRVPP 140
            SS PP   PPS+T    +LD LGRDLS CVLEQYVFT++GIGLGTG+ V+R+S  PLVA+GA GS+GDL YGLG+ACKG++DAYKACRN++    +PP   PP
Sbjct:    4 SSSPPASSPPSDTATESELDVLGRDLSGCVLEQYVFTIMGIGLGTGMSVHRKSFFPLVAWGAAGSIGDLMYGLGYACKGQYDAYKACRNKLHRPQVPPITPPP 106
The following BLAST results are available for this feature:
BLAST of NO29G00810.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21305.11.400e-2764.08hypothetical protein Naga_100350g3 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO29G00810NO29G00810Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO29G00810.1NO29G00810.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO29G00810.1.cds1NO29G00810.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO29G00810.1 ID=NO29G00810.1|Name=NO29G00810.1|organism=Nannochloropsis oceanica|type=mRNA|length=831bp
GGGAACTTGCCTTATCTGCGGAACAAGCGGATGCGGCGACGCGCGGCGAC
GGCGGCGACGACATGAGCAAGCAACGGACACAAGACCGCTAAATTTGATT
TCAGAGCAAATTCACAACTCTTATACAAAGGGATCACTTCGGGCATCCTT
TGCACGGCGACGGAGGATAAAGAGGCACTGGCTGAGTCCTGACATGTACC
CAGAAACGACGAAACTAACCTCCTCTCCCCCTTTTTTCCTTTTCCCCACT
GTTCTCATCCCCTGCCTCAGCCTCTTCCACGCGCACCCTCACGAAGGCAG
TCGCAAACCAATGGAGTCGTCCTCCTCTCTTCCTCCACCACCAAGCGAGA
CCGACCTCGACCGCCTCGGCCGTGACCTTTCTGCATGCGTCCTAGAACAA
TACGTCTTCACCGTCGTAGGCATCGGGCTAGGCACTGGTCTCGGCGTCTA
TCGCAGGAGCCTCTTGCCCCTTGTTGCCTTCGGTGCCGTGGGCAGCTTGG
GTGACTTAGCCTATGGGTTAGGTTGGGCATGTAAAGGAAAATTTGATGCG
TACAAGGCATGTAGGAATCGAGTGCAGCCTCTAATCATACCACCACCACG
GGTTCCGCCGCCGTTTCCATTACAGTCACAGCCAGACACTTCCTCCTCAT
CCTCTTCTCCGCCCCCCACGTCTTTGTCCTCATCATCCACTTGGTTTAGG
GTCTCGTCATCGTCGACTCCGCCGGCGCCGAAAGTAGGAAAGTCAAGAGC
AGAAAAAGATTGAACGAGTTTTTAAAGATTATGCAGCGATTGTATGGAGA
GATCCAAAGCCAAAATTGTACGTGCGCGGAT
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protein sequence of NO29G00810.1

>NO29G00810.1-protein ID=NO29G00810.1-protein|Name=NO29G00810.1|organism=Nannochloropsis oceanica|type=polypeptide|length=190bp
MYPETTKLTSSPPFFLFPTVLIPCLSLFHAHPHEGSRKPMESSSSLPPPP
SETDLDRLGRDLSACVLEQYVFTVVGIGLGTGLGVYRRSLLPLVAFGAVG
SLGDLAYGLGWACKGKFDAYKACRNRVQPLIIPPPRVPPPFPLQSQPDTS
SSSSSPPPTSLSSSSTWFRVSSSSTPPAPKVGKSRAEKD*
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mRNA from alignment at chr29:298558..299388-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO29G00810.1 ID=NO29G00810.1|Name=NO29G00810.1|organism=Nannochloropsis oceanica|type=mRNA|length=831bp|location=Sequence derived from alignment at chr29:298558..299388- (Nannochloropsis oceanica)
GGGAACTTGCCTTATCTGCGGAACAAGCGGATGCGGCGACGCGCGGCGAC
GGCGGCGACGACATGAGCAAGCAACGGACACAAGACCGCTAAATTTGATT
TCAGAGCAAATTCACAACTCTTATACAAAGGGATCACTTCGGGCATCCTT
TGCACGGCGACGGAGGATAAAGAGGCACTGGCTGAGTCCTGACATGTACC
CAGAAACGACGAAACTAACCTCCTCTCCCCCTTTTTTCCTTTTCCCCACT
GTTCTCATCCCCTGCCTCAGCCTCTTCCACGCGCACCCTCACGAAGGCAG
TCGCAAACCAATGGAGTCGTCCTCCTCTCTTCCTCCACCACCAAGCGAGA
CCGACCTCGACCGCCTCGGCCGTGACCTTTCTGCATGCGTCCTAGAACAA
TACGTCTTCACCGTCGTAGGCATCGGGCTAGGCACTGGTCTCGGCGTCTA
TCGCAGGAGCCTCTTGCCCCTTGTTGCCTTCGGTGCCGTGGGCAGCTTGG
GTGACTTAGCCTATGGGTTAGGTTGGGCATGTAAAGGAAAATTTGATGCG
TACAAGGCATGTAGGAATCGAGTGCAGCCTCTAATCATACCACCACCACG
GGTTCCGCCGCCGTTTCCATTACAGTCACAGCCAGACACTTCCTCCTCAT
CCTCTTCTCCGCCCCCCACGTCTTTGTCCTCATCATCCACTTGGTTTAGG
GTCTCGTCATCGTCGACTCCGCCGGCGCCGAAAGTAGGAAAGTCAAGAGC
AGAAAAAGATTGAACGAGTTTTTAAAGATTATGCAGCGATTGTATGGAGA
GATCCAAAGCCAAAATTGTACGTGCGCGGAT
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Coding sequence (CDS) from alignment at chr29:298558..299388-

>NO29G00810.1 ID=NO29G00810.1|Name=NO29G00810.1|organism=Nannochloropsis oceanica|type=CDS|length=570bp|location=Sequence derived from alignment at chr29:298558..299388- (Nannochloropsis oceanica)
ATGTACCCAGAAACGACGAAACTAACCTCCTCTCCCCCTTTTTTCCTTTT
CCCCACTGTTCTCATCCCCTGCCTCAGCCTCTTCCACGCGCACCCTCACG
AAGGCAGTCGCAAACCAATGGAGTCGTCCTCCTCTCTTCCTCCACCACCA
AGCGAGACCGACCTCGACCGCCTCGGCCGTGACCTTTCTGCATGCGTCCT
AGAACAATACGTCTTCACCGTCGTAGGCATCGGGCTAGGCACTGGTCTCG
GCGTCTATCGCAGGAGCCTCTTGCCCCTTGTTGCCTTCGGTGCCGTGGGC
AGCTTGGGTGACTTAGCCTATGGGTTAGGTTGGGCATGTAAAGGAAAATT
TGATGCGTACAAGGCATGTAGGAATCGAGTGCAGCCTCTAATCATACCAC
CACCACGGGTTCCGCCGCCGTTTCCATTACAGTCACAGCCAGACACTTCC
TCCTCATCCTCTTCTCCGCCCCCCACGTCTTTGTCCTCATCATCCACTTG
GTTTAGGGTCTCGTCATCGTCGACTCCGCCGGCGCCGAAAGTAGGAAAGT
CAAGAGCAGAAAAAGATTGA
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Synonyms
Publications