NO29G00700, NO29G00700 (gene) Nannochloropsis oceanica

Overview
NameNO29G00700
Unique NameNO29G00700
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2482
Alignment locationchr29:266344..268825 +

Link to JBrowse

Properties
Property NameValue
DescriptionProline-rich transmembrane protein 1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr29genomechr29:266344..268825 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016021integral component of membrane
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0009607response to biotic stimulus
Vocabulary: INTERPRO
TermDefinition
IPR007593CD225/Dispanin_fam
Homology
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BLAST of NO29G00700 vs. NCBI_GenBank
Match: EWM21293.1 (hypothetical protein Naga_101345g1 [Nannochloropsis gaditana])

HSP 1 Score: 70.9 bits (172), Expect = 4.400e-9
Identity = 86/197 (43.65%), Postives = 106/197 (53.81%), Query Frame = 0 
Query:    3 PPQNMNDIPEATVLSGPQIPPG-----NTSQQGSIPA---AYTIARPV---THTPPPQPGYIHP---------------------XXXXXXXXXXXXXXXXXXXXDETTLAEYMASHGGQVPPAPPDYMPLAICSCLCCWPISLIAIFNSRQVRVSYARGQYMHAYLASRRAKSLALLSVFMGTILLVWYYMMMRGR 168
            P Q++NDIPEATVLSGP  P G     +TS Q +IPA   AYTIA+P    +H   P P  ++P                     XXXXXXXXXXXXXXXXXXXX       Y A        A  D++     S     P   +       VR+ Y RGQY+HAYLASRR ++LALLS+F G+ LL+ Y++M R R
Sbjct:   15 PDQDLNDIPEATVLSGP--PTGGNSHASTSHQSTIPAAQMAYTIAQPTHPPSHPTAPSPMVMYPTQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXITYQAQQSDAPSGAWRDHVIFYFLSSPPFAPPPSLP-----TVRLLYGRGQYLHAYLASRRTRALALLSIFTGSSLLIMYFLMSRRR 204
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BLAST of NO29G00700 vs. NCBI_GenBank
Match: PFX29833.1 (Proline-rich transmembrane protein 1 [Stylophora pistillata])

HSP 1 Score: 63.9 bits (154), Expect = 5.300e-7
Identity = 33/77 (42.86%), Postives = 48/77 (62.34%), Query Frame = 0 
Query:   89 GQVPPAPPDYMPLAICSCL-CCWPISLIAIFNSRQVRVSYARGQYMHAYLASRRAKSLALLSVFMGTILLVWYYMMM 165
            G V  +PPDY  LA  +CL CCWP+ ++AI  S +VR S ARG Y  A +AS  A++ + L++ +G   LV Y + +
Sbjct:  107 GNVQASPPDYQGLAWFACLCCCWPVGILAILKSNEVRNSMARGDYNSARVASNSARTFSYLAIGLGVSFLVMYIIAL 183
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BLAST of NO29G00700 vs. NCBI_GenBank
Match: XP_022783538.1 (proline-rich transmembrane protein 1-like isoform X1 [Stylophora pistillata] >XP_022783539.1 proline-rich transmembrane protein 1-like isoform X1 [Stylophora pistillata])

HSP 1 Score: 63.9 bits (154), Expect = 5.300e-7
Identity = 33/77 (42.86%), Postives = 48/77 (62.34%), Query Frame = 0 
Query:   89 GQVPPAPPDYMPLAICSCL-CCWPISLIAIFNSRQVRVSYARGQYMHAYLASRRAKSLALLSVFMGTILLVWYYMMM 165
            G V  +PPDY  LA  +CL CCWP+ ++AI  S +VR S ARG Y  A +AS  A++ + L++ +G   LV Y + +
Sbjct:  101 GNVQASPPDYQGLAWFACLCCCWPVGILAILKSNEVRNSMARGDYNSARVASNSARTFSYLAIGLGVSFLVMYIIAL 177
[Close]
BLAST of NO29G00700 vs. NCBI_GenBank
Match: XP_022783540.1 (proline-rich transmembrane protein 1-like isoform X2 [Stylophora pistillata])

HSP 1 Score: 63.9 bits (154), Expect = 5.300e-7
Identity = 33/77 (42.86%), Postives = 48/77 (62.34%), Query Frame = 0 
Query:   89 GQVPPAPPDYMPLAICSCL-CCWPISLIAIFNSRQVRVSYARGQYMHAYLASRRAKSLALLSVFMGTILLVWYYMMM 165
            G V  +PPDY  LA  +CL CCWP+ ++AI  S +VR S ARG Y  A +AS  A++ + L++ +G   LV Y + +
Sbjct:   86 GNVQASPPDYQGLAWFACLCCCWPVGILAILKSNEVRNSMARGDYNSARVASNSARTFSYLAIGLGVSFLVMYIIAL 162
The following BLAST results are available for this feature:
BLAST of NO29G00700 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 4
Match NameE-valueIdentityDescription
EWM21293.14.400e-943.65hypothetical protein Naga_101345g1 [Nannochloropsi... [more]
PFX29833.15.300e-742.86Proline-rich transmembrane protein 1 [Stylophora p... [more]
XP_022783538.15.300e-742.86proline-rich transmembrane protein 1-like isoform ... [more]
XP_022783540.15.300e-742.86proline-rich transmembrane protein 1-like isoform ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL061nonsL061Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR038ncniR038Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR081ngnoR081Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005189NSK005189Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO29G00700.1NO29G00700.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601278gene_8244Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_101345g1gene9129Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO29G00700.1NO29G00700.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO29G00700 ID=NO29G00700|Name=NO29G00700|organism=Nannochloropsis oceanica|type=gene|length=2482bp
TGAGAGTTTTCTCAGAGCAAAATGTGCAGGCGAAGCTCTCTGGTTCGATT
ATACGTTGTCCTTTGCTGTCAAACCAGTCGTGCCAAAAGCAGGAGCAGCT
ACAAAAGAATTAGCATCGGGAGTGGGCTGCACGGGCGACAGGGTTTTATA
AAAGATGCTACGCACAGTCTTTGTGGACGATGGGTTCGGTGTGGAACGGA
CAGAAATCTCGCCGTCATCGTCATCATTGTTGTCTCTGACCTCACTCGCA
AGCGTTTGTCCACTCTACCCACAATCATTAAACACATAAGCACCCTCAAT
AAGCAGACGTAAAGTCTAAGTCTGGATAGCTTGGGGATCCTGGAGCATAG
CTAAAGAGTTTGGTGTCCCCCCACGATCTCATTATGCTCGCTCTTCTCAC
CATCACCCTACCCCACCCTTCCTGCAGCGACCAACAATGCAGCCGCCACA
AAACATGAACGATATCCCGGAGGCCACAGTCTTGTCTGGGCCTCAGATCC
CACCGGGTAACACCAGTCAACAAGGCTCAATCCCTGCCGCCTACACCATA
GCTCGTCCCGTCACCCATACCCCACCGCCACAACCGGGCTACATACATCC
ATACATGCACCAGCAGCAGCAGCAACAACAACAGCAGCAGCTGCCACAAG
ATGTTGTGATAGATGAAACGACGCTGGCTGAATACATGGCGTCTCATGGA
GGACAAGTGCCCCCCGCTCCCCCAGgtgggtctttcttttgttgcgtgtt
tgtgtaggtgtatgtgtctttgtctctgtgaatttaggcgcgctcacatg
tgcgcgtgcactgtggcatgaatgttggaaaagtgccacctgtattagta
tgtgtatatgtatattcgcgtctagttgattcattgccaggtgcgaggct
tatcgctgcaagctgaacgaggcttggcatgcacatcgagaaagatgtct
cttggcccggttgtgtcaggacatcagtgagtttgtctcttcttctgact
gcgtcaggcttgccttgttctcaagggcgctgattattacctgagattca
tgcccgctggtcatagttgatgttttcccgccggcaatcttgtgtgatct
tcccttgcacagcagcagttacagctcataaaagtgatgatctggtaaag
cctttctatactttattaatttatccgtttattcatttcataatttttca
tttatcaatgtgggtgtgaaagaagagagggaagaaaacagtgatgaacg
acattcttaactttatcaagctcaacagtcggatcttcttgcgaggacgc
tgacgagattttgtcatcttctaaagctgagttttctattctctccctcc
aaatgatcgtgtatttatgtttgccgaagtttggtttttaacaatctttt
tcaaatggtaaatcatttttattaatttattaatttactcatgaataatt
gaatttctgatgattgatttctgccgctatgacaaatgacagttgcttca
cctctatccctctctgactcacccaccttccctccctcaacccaacagAT
TACATGCCCCTAGCCATCTGCTCCTGCCTGTGCTGTTGGCCCATCTCCCT
CATCGCCATATTCAATAGCCGGCAAGTCCGTGTGTCCTACGCCCGGGGGC
AGTACATGCACGCGTACCTCGCTTCGAGACGTGCAAAGTCGCTGGCGCTG
CTGTCGGTGTTCATGGGCACTATCTTATTGGTATGGTACTACATGATGAT
GCGGGGTAGGTAGAAAGAAACCAATAGGGCCTGGGGGTCGAGACCCTCTT
TCCCTTTCCTCGCTTCACTCCTAGGGCTGCAGAGACGCCCTCTCTTTCCC
TTCTTCCCTCCGTATATCCACTCCTCCCCAAGTGCTGGGTAGCGAGGAGC
ATTCCTTCCTTTTTGTATTCCCTCCCTCTCTCCCTCCCGAATGATACGGT
GTTGAGAGTTCGGTATCCTGCGTGATAGTGAGAAAAAAGTACTGTAAGAA
AAGCAGGAGGAGGGGCATTGCTGGGTGGGTCGAGGGACCTAAAGTGTGTC
TCCTCCCCTCCTCCCTCCATTAATGTATCCCTGATCGTCACTGTTGCGCC
TGGAGCAAACACCATCTGTCCAAGAGCAGATGGGAGTCGGCAGCTGCAAA
AAGAGCAGTAGCAGCCGCAGCAGCCGCAGCAGCGCCAGCAGCGTCAGTAT
CAGCACCAGCACCAGCACCAGCACCAACCGTAGTTTATCAACAGTGTGAA
TACGAGTTGTGTGTGTATGTATGTATTCGTAGTTCTTTTGTAATTGGTAG
ATTTAAGTGGGTGTCTGTGTGTGATACGAGACAGGGAAATGTATGCATGG
ATATGCACTCCAAAAAATCATGACAATGGGAAGATGATCATGAATGCTAC
AAGCCGGATGGGGTTTTGGAGACGTATTTTCGAAAAGCATGGGCAGGGAC
GTGCGGAAAAACGATGCTGGAGAAATTGAACA
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protein sequence of NO29G00700.1

>NO29G00700.1-protein ID=NO29G00700.1-protein|Name=NO29G00700.1|organism=Nannochloropsis oceanica|type=polypeptide|length=168bp
MQPPQNMNDIPEATVLSGPQIPPGNTSQQGSIPAAYTIARPVTHTPPPQP
GYIHPYMHQQQQQQQQQQLPQDVVIDETTLAEYMASHGGQVPPAPPDYMP
LAICSCLCCWPISLIAIFNSRQVRVSYARGQYMHAYLASRRAKSLALLSV
FMGTILLVWYYMMMRGR*
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Synonyms
Publications