NO29G00700.1, NO29G00700.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO29G00700.1
Unique NameNO29G00700.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1659
Alignment locationchr29:266344..268825 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr29genomechr29:266344..268825 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO29G00700.1 vs.
Match: EWM21293.1 (hypothetical protein Naga_101345g1 [Nannochloropsis gaditana])

HSP 1 Score: 103.6 bits (257), Expect = 6.100e-19
Identity = 81/194 (41.75%), Postives = 104/194 (53.61%), Query Frame = 0 
Query:    3 PPQNMNDIPEATVLSGPQIPPG-----NTSQQGSIPAA---YTIARPVTHTPPPQPGYIHPYMHQQQQQQQQQQLPQDVVIDETTLAEYMASHGGQVPPAPP-----------DYMPLAICSCLCCWPISLIAIFNSR----------QVRVSYARGQYMHAYLASRRAKSLALLSVFMGTILLVWYYMMMRGR 168
            P Q++NDIPEATVLSGP  P G     +TS Q +IPAA   YTIA+P TH PP  P    P +    Q          VV+D++ +A+Y+A  GG VPP PP            Y      +    W   +I  F S            VR+ Y RGQY+HAYLASRR ++LALLS+F G+ LL+ Y++M R R
Sbjct:   15 PDQDLNDIPEATVLSGP--PTGGNSHASTSHQSTIPAAQMAYTIAQP-TH-PPSHPTAPSPMVMYPTQGGGYPPRQGPVVVDDSVMAQYLAQQGGSVPPPPPGGGSCDERRFITYQAQQSDAPSGAWRDHVIFYFLSSPPFAPPPSLPTVRLLYGRGQYLHAYLASRRTRALALLSIFTGSSLLIMYFLMSRRR 204
The following BLAST results are available for this feature:
BLAST of NO29G00700.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21293.16.100e-1941.75hypothetical protein Naga_101345g1 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO29G00700NO29G00700Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO29G00700.1NO29G00700.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO29G00700.1.cds1NO29G00700.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO29G00700.1.cds2NO29G00700.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO29G00700.1 ID=NO29G00700.1|Name=NO29G00700.1|organism=Nannochloropsis oceanica|type=mRNA|length=1659bp
TGAGAGTTTTCTCAGAGCAAAATGTGCAGGCGAAGCTCTCTGGTTCGATT
ATACGTTGTCCTTTGCTGTCAAACCAGTCGTGCCAAAAGCAGGAGCAGCT
ACAAAAGAATTAGCATCGGGAGTGGGCTGCACGGGCGACAGGGTTTTATA
AAAGATGCTACGCACAGTCTTTGTGGACGATGGGTTCGGTGTGGAACGGA
CAGAAATCTCGCCGTCATCGTCATCATTGTTGTCTCTGACCTCACTCGCA
AGCGTTTGTCCACTCTACCCACAATCATTAAACACATAAGCACCCTCAAT
AAGCAGACGTAAAGTCTAAGTCTGGATAGCTTGGGGATCCTGGAGCATAG
CTAAAGAGTTTGGTGTCCCCCCACGATCTCATTATGCTCGCTCTTCTCAC
CATCACCCTACCCCACCCTTCCTGCAGCGACCAACAATGCAGCCGCCACA
AAACATGAACGATATCCCGGAGGCCACAGTCTTGTCTGGGCCTCAGATCC
CACCGGGTAACACCAGTCAACAAGGCTCAATCCCTGCCGCCTACACCATA
GCTCGTCCCGTCACCCATACCCCACCGCCACAACCGGGCTACATACATCC
ATACATGCACCAGCAGCAGCAGCAACAACAACAGCAGCAGCTGCCACAAG
ATGTTGTGATAGATGAAACGACGCTGGCTGAATACATGGCGTCTCATGGA
GGACAAGTGCCCCCCGCTCCCCCAGATTACATGCCCCTAGCCATCTGCTC
CTGCCTGTGCTGTTGGCCCATCTCCCTCATCGCCATATTCAATAGCCGGC
AAGTCCGTGTGTCCTACGCCCGGGGGCAGTACATGCACGCGTACCTCGCT
TCGAGACGTGCAAAGTCGCTGGCGCTGCTGTCGGTGTTCATGGGCACTAT
CTTATTGGTATGGTACTACATGATGATGCGGGGTAGGTAGAAAGAAACCA
ATAGGGCCTGGGGGTCGAGACCCTCTTTCCCTTTCCTCGCTTCACTCCTA
GGGCTGCAGAGACGCCCTCTCTTTCCCTTCTTCCCTCCGTATATCCACTC
CTCCCCAAGTGCTGGGTAGCGAGGAGCATTCCTTCCTTTTTGTATTCCCT
CCCTCTCTCCCTCCCGAATGATACGGTGTTGAGAGTTCGGTATCCTGCGT
GATAGTGAGAAAAAAGTACTGTAAGAAAAGCAGGAGGAGGGGCATTGCTG
GGTGGGTCGAGGGACCTAAAGTGTGTCTCCTCCCCTCCTCCCTCCATTAA
TGTATCCCTGATCGTCACTGTTGCGCCTGGAGCAAACACCATCTGTCCAA
GAGCAGATGGGAGTCGGCAGCTGCAAAAAGAGCAGTAGCAGCCGCAGCAG
CCGCAGCAGCGCCAGCAGCGTCAGTATCAGCACCAGCACCAGCACCAGCA
CCAACCGTAGTTTATCAACAGTGTGAATACGAGTTGTGTGTGTATGTATG
TATTCGTAGTTCTTTTGTAATTGGTAGATTTAAGTGGGTGTCTGTGTGTG
ATACGAGACAGGGAAATGTATGCATGGATATGCACTCCAAAAAATCATGA
CAATGGGAAGATGATCATGAATGCTACAAGCCGGATGGGGTTTTGGAGAC
GTATTTTCGAAAAGCATGGGCAGGGACGTGCGGAAAAACGATGCTGGAGA
AATTGAACA
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protein sequence of NO29G00700.1

>NO29G00700.1-protein ID=NO29G00700.1-protein|Name=NO29G00700.1|organism=Nannochloropsis oceanica|type=polypeptide|length=168bp
MQPPQNMNDIPEATVLSGPQIPPGNTSQQGSIPAAYTIARPVTHTPPPQP
GYIHPYMHQQQQQQQQQQLPQDVVIDETTLAEYMASHGGQVPPAPPDYMP
LAICSCLCCWPISLIAIFNSRQVRVSYARGQYMHAYLASRRAKSLALLSV
FMGTILLVWYYMMMRGR*
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mRNA from alignment at chr29:266344..268825+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO29G00700.1 ID=NO29G00700.1|Name=NO29G00700.1|organism=Nannochloropsis oceanica|type=mRNA|length=2482bp|location=Sequence derived from alignment at chr29:266344..268825+ (Nannochloropsis oceanica)
TGAGAGTTTTCTCAGAGCAAAATGTGCAGGCGAAGCTCTCTGGTTCGATT
ATACGTTGTCCTTTGCTGTCAAACCAGTCGTGCCAAAAGCAGGAGCAGCT
ACAAAAGAATTAGCATCGGGAGTGGGCTGCACGGGCGACAGGGTTTTATA
AAAGATGCTACGCACAGTCTTTGTGGACGATGGGTTCGGTGTGGAACGGA
CAGAAATCTCGCCGTCATCGTCATCATTGTTGTCTCTGACCTCACTCGCA
AGCGTTTGTCCACTCTACCCACAATCATTAAACACATAAGCACCCTCAAT
AAGCAGACGTAAAGTCTAAGTCTGGATAGCTTGGGGATCCTGGAGCATAG
CTAAAGAGTTTGGTGTCCCCCCACGATCTCATTATGCTCGCTCTTCTCAC
CATCACCCTACCCCACCCTTCCTGCAGCGACCAACAATGCAGCCGCCACA
AAACATGAACGATATCCCGGAGGCCACAGTCTTGTCTGGGCCTCAGATCC
CACCGGGTAACACCAGTCAACAAGGCTCAATCCCTGCCGCCTACACCATA
GCTCGTCCCGTCACCCATACCCCACCGCCACAACCGGGCTACATACATCC
ATACATGCACCAGCAGCAGCAGCAACAACAACAGCAGCAGCTGCCACAAG
ATGTTGTGATAGATGAAACGACGCTGGCTGAATACATGGCGTCTCATGGA
GGACAAGTGCCCCCCGCTCCCCCAGGTGGGTCTTTCTTTTGTTGCGTGTT
TGTGTAGGTGTATGTGTCTTTGTCTCTGTGAATTTAGGCGCGCTCACATG
TGCGCGTGCACTGTGGCATGAATGTTGGAAAAGTGCCACCTGTATTAGTA
TGTGTATATGTATATTCGCGTCTAGTTGATTCATTGCCAGGTGCGAGGCT
TATCGCTGCAAGCTGAACGAGGCTTGGCATGCACATCGAGAAAGATGTCT
CTTGGCCCGGTTGTGTCAGGACATCAGTGAGTTTGTCTCTTCTTCTGACT
GCGTCAGGCTTGCCTTGTTCTCAAGGGCGCTGATTATTACCTGAGATTCA
TGCCCGCTGGTCATAGTTGATGTTTTCCCGCCGGCAATCTTGTGTGATCT
TCCCTTGCACAGCAGCAGTTACAGCTCATAAAAGTGATGATCTGGTAAAG
CCTTTCTATACTTTATTAATTTATCCGTTTATTCATTTCATAATTTTTCA
TTTATCAATGTGGGTGTGAAAGAAGAGAGGGAAGAAAACAGTGATGAACG
ACATTCTTAACTTTATCAAGCTCAACAGTCGGATCTTCTTGCGAGGACGC
TGACGAGATTTTGTCATCTTCTAAAGCTGAGTTTTCTATTCTCTCCCTCC
AAATGATCGTGTATTTATGTTTGCCGAAGTTTGGTTTTTAACAATCTTTT
TCAAATGGTAAATCATTTTTATTAATTTATTAATTTACTCATGAATAATT
GAATTTCTGATGATTGATTTCTGCCGCTATGACAAATGACAGTTGCTTCA
CCTCTATCCCTCTCTGACTCACCCACCTTCCCTCCCTCAACCCAACAGAT
TACATGCCCCTAGCCATCTGCTCCTGCCTGTGCTGTTGGCCCATCTCCCT
CATCGCCATATTCAATAGCCGGCAAGTCCGTGTGTCCTACGCCCGGGGGC
AGTACATGCACGCGTACCTCGCTTCGAGACGTGCAAAGTCGCTGGCGCTG
CTGTCGGTGTTCATGGGCACTATCTTATTGGTATGGTACTACATGATGAT
GCGGGGTAGGTAGAAAGAAACCAATAGGGCCTGGGGGTCGAGACCCTCTT
TCCCTTTCCTCGCTTCACTCCTAGGGCTGCAGAGACGCCCTCTCTTTCCC
TTCTTCCCTCCGTATATCCACTCCTCCCCAAGTGCTGGGTAGCGAGGAGC
ATTCCTTCCTTTTTGTATTCCCTCCCTCTCTCCCTCCCGAATGATACGGT
GTTGAGAGTTCGGTATCCTGCGTGATAGTGAGAAAAAAGTACTGTAAGAA
AAGCAGGAGGAGGGGCATTGCTGGGTGGGTCGAGGGACCTAAAGTGTGTC
TCCTCCCCTCCTCCCTCCATTAATGTATCCCTGATCGTCACTGTTGCGCC
TGGAGCAAACACCATCTGTCCAAGAGCAGATGGGAGTCGGCAGCTGCAAA
AAGAGCAGTAGCAGCCGCAGCAGCCGCAGCAGCGCCAGCAGCGTCAGTAT
CAGCACCAGCACCAGCACCAGCACCAACCGTAGTTTATCAACAGTGTGAA
TACGAGTTGTGTGTGTATGTATGTATTCGTAGTTCTTTTGTAATTGGTAG
ATTTAAGTGGGTGTCTGTGTGTGATACGAGACAGGGAAATGTATGCATGG
ATATGCACTCCAAAAAATCATGACAATGGGAAGATGATCATGAATGCTAC
AAGCCGGATGGGGTTTTGGAGACGTATTTTCGAAAAGCATGGGCAGGGAC
GTGCGGAAAAACGATGCTGGAGAAATTGAACA
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Coding sequence (CDS) from alignment at chr29:266344..268825+

>NO29G00700.1 ID=NO29G00700.1|Name=NO29G00700.1|organism=Nannochloropsis oceanica|type=CDS|length=504bp|location=Sequence derived from alignment at chr29:266344..268825+ (Nannochloropsis oceanica)
ATGCAGCCGCCACAAAACATGAACGATATCCCGGAGGCCACAGTCTTGTC
TGGGCCTCAGATCCCACCGGGTAACACCAGTCAACAAGGCTCAATCCCTG
CCGCCTACACCATAGCTCGTCCCGTCACCCATACCCCACCGCCACAACCG
GGCTACATACATCCATACATGCACCAGCAGCAGCAGCAACAACAACAGCA
GCAGCTGCCACAAGATGTTGTGATAGATGAAACGACGCTGGCTGAATACA
TGGCGTCTCATGGAGGACAAGTGCCCCCCGCTCCCCCAGATTACATGCCC
CTAGCCATCTGCTCCTGCCTGTGCTGTTGGCCCATCTCCCTCATCGCCAT
ATTCAATAGCCGGCAAGTCCGTGTGTCCTACGCCCGGGGGCAGTACATGC
ACGCGTACCTCGCTTCGAGACGTGCAAAGTCGCTGGCGCTGCTGTCGGTG
TTCATGGGCACTATCTTATTGGTATGGTACTACATGATGATGCGGGGTAG
GTAG
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Synonyms
Publications