NO29G00630, NO29G00630 (gene) Nannochloropsis oceanica

Overview
NameNO29G00630
Unique NameNO29G00630
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1870
Alignment locationchr29:240585..242454 -

Link to JBrowse

Properties
Property NameValue
DescriptionGNAT domain protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr29genomechr29:240585..242454 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR016181Acyl_CoA_acyltransferase
IPR000182GNAT_dom
Homology
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BLAST of NO29G00630 vs. NCBI_GenBank
Match: EWM21284.1 (GNAT domain protein [Nannochloropsis gaditana])

HSP 1 Score: 84.0 bits (206), Expect = 1.400e-12
Identity = 78/252 (30.95%), Postives = 97/252 (38.49%), Query Frame = 0 
Query:  136 NQKRNGRLVGFILAQLIPLAELSAEDSSLLLPLSPYPLLPSFLSTPPPIP-PAPATHAMYILTLGTRPDARRRGLGRSLLLQALGHSSITSSSTSCHSPLPPATSSCGTGGQATSTAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPAIKFYSSLNFQNKGRLPRYYMINGKEEDAWLYAWDVQNGECGRGGGVG 387
            +  R GRL+G ILAQL+P +E + +D+ LLLP     L  S L   P  P P+P+THA+YILTLGTRPDARR+GL RSLLL+ L  +S+                    G                                                                                            + AI FY    FQ +GRLPRYY+INGKEEDA+LY         G+GGG G
Sbjct:  145 SSSREGRLLGIILAQLLPFSECAPDDADLLLPAP--RLAHSLLPPLPTCPLPSPSTHALYILTLGTRPDARRQGLARSLLLRTLSQASLXXXXXXXXXXXXXXXXXPHLG----------------------------------------------------------------------------------LVYLHVLPRNQSAIAFYVQQGFQCRGRLPRYYVINGKEEDAYLYV-----RYAGQGGGEG 307
The following BLAST results are available for this feature:
BLAST of NO29G00630 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21284.11.400e-1230.95GNAT domain protein [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL061nonsL061Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR038ncniR038Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR081ngnoR081Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO29G00630.1NO29G00630.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100468g6gene9140Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO29G00630.1NO29G00630.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO29G00630 ID=NO29G00630|Name=NO29G00630|organism=Nannochloropsis oceanica|type=gene|length=1870bp
ATGGTAGGGACATTGCAGCCATTGATAACACTGGTCGCGATGGAGGGAGA
GGAGGAGGAGCAGGAGCAGGGAGGGCGAAGAGGAGGAGAGAAGGAAGTGG
TGATGAAGACTACTAGACAGCTGGTGGCAACGAAGGAGGAGGAGGAGAAG
GAGGAGGAGGAGGAGGAGGAGGGAGGGCATATAGGAGGAGGGCAGGACAA
GGGGATCAGAAGCGGTTTAGCTCCCTCTTCAACCGCTTCTTCTTCCTCCC
CTTCCTCCTCTTTCTCTTCCGCTCCTTCCTCTCCGCTCTTCTCCTCCACT
TTTGTGAAGACACCAATACCATCAACTGCAGCACCTACCTCCCTGCTTTC
TCTCTCCTTGTCCTCCTCCCCCTCCTCCTCCCTTCCGGCCCCTTTCCAGA
CCGTAAATCAAAAACGAAACGGGCGCCTCGTCGGTTTCATCCTCGCTCAG
CTCATCCCCCTTGCCGAGCTCTCCGCCGAGGACTCCTCCCTTCTCCTCCC
CCTCTCTCCTTACCCGCTCCTCCCTTCTTTCCTCTCTACGCCTCCCCCTA
TCCCTCCCGCTCCTGCTACACACGCCATGTACATCCTCACGCTGGGCACA
CGTCCCGATGCCCGTCGAAGGGGCCTCGGTCGCTCCCTCCTCCTCCAAGC
CCTCGGCCACTCCTCCATCACATCCTCCTCCACGTCCTGCCATTCTCCCC
TCCCTCCGGCGACCAGCAGCTGTGGTACTGGGGGACAAGCCACCTCCACC
GCCGTCCCTTCCTCCTCCCCATCCTCCTTCTCTTCCTCCTCCAGCTGCAT
CACTACGTCAATCAGCATCCCCTCCTCCACCTCTTCCTCTCGCCTTCCCT
CCCTCCCTCCCTCCCCCTTCCCCCCCGTCACCCTTGGCCCGATCTCCCCC
CATGTCCTCCCTTCGAATCCCTTCCCCTCCCTCCCCCCCGCCCTTCCGCC
CTCCTCCTCCTCCCCCGTCGTTCTGGGGCTAGTCTACCTTCATGTCCTCC
CTTCCAACCGCCCCGCCATCAAATTTTACTCGAGTTTGAATTTTCAAAAT
AAAGGGCGGCTACCCAGATATTATATGATTAACGGGAAAGAAGAGGATGC
ATGGCTGTATGCCTGGGATGTCCAAAATGGGGAGTGCGGGAGGGGAGGAG
GGGTAGGGAGGATGTGGGAGGGAGTGGTGGAGAGCGTTTGGTTGTTGGCG
AGGGCGATGGTCTTATGGTTGAGGAGAGGGAGGGAGGGAGGGAGGGAGGG
GGTGCAGAGAAAGAAGGGGAGGATGGTGCCGTCTTCTTCTCGTTTGGAGG
AAGGTGGTGGTAATAGCAGCAGTAGAAGTAGTAGTAGCAGTAGTAGTAGT
AGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAG
TAGTATTGATACATTCACGACACCAAGCACACGAGCAGAGCTAGCAGTGT
GACAGACAAATGCGTGGCCAGTGTCTCGAAGAGCCCAAAATGACATCTAA
GTTTAAGTCAAAATTTCTCAAAATCCTTTCAAGTTCATATATCGTTTGCA
TCGTGCAGAGGTAATAATGAGGTGATGACGGCTGGCACAGAAGCAGACAC
GGCCTTGTCGTGTATTTCCATTTCGAAAGGAAGAACAACCTCAATAGACA
AAGCACAACCTAGAATGCATACTTGCGTGTGTATGTAAAACAAATCAAGG
CAGTGTAAACGTTTCAAAATTAAACATTTAGTGACGACTTAAGTTATTGT
TGATTTATAATTATTCAATAAATAATGCTAAAATTTTGCTTGAAAATCAA
CTTGATGGGACTAATGAGATGCATCAACAAGTCAAAATAGGGATAGATCA
GCAGGGCAAAATATACGCCA
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protein sequence of NO29G00630.1

>NO29G00630.1-protein ID=NO29G00630.1-protein|Name=NO29G00630.1|organism=Nannochloropsis oceanica|type=polypeptide|length=484bp
MVGTLQPLITLVAMEGEEEEQEQGGRRGGEKEVVMKTTRQLVATKEEEEK
EEEEEEEGGHIGGGQDKGIRSGLAPSSTASSSSPSSSFSSAPSSPLFSST
FVKTPIPSTAAPTSLLSLSLSSSPSSSLPAPFQTVNQKRNGRLVGFILAQ
LIPLAELSAEDSSLLLPLSPYPLLPSFLSTPPPIPPAPATHAMYILTLGT
RPDARRRGLGRSLLLQALGHSSITSSSTSCHSPLPPATSSCGTGGQATST
AVPSSSPSSFSSSSSCITTSISIPSSTSSSRLPSLPPSPFPPVTLGPISP
HVLPSNPFPSLPPALPPSSSSPVVLGLVYLHVLPSNRPAIKFYSSLNFQN
KGRLPRYYMINGKEEDAWLYAWDVQNGECGRGGGVGRMWEGVVESVWLLA
RAMVLWLRRGREGGREGVQRKKGRMVPSSSRLEEGGGNSSSRSSSSSSSS
SSSSSSSSSSSSSSSSSSIDTFTTPSTRAELAV*
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Synonyms
Publications