NO29G00630.1, NO29G00630.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO29G00630.1
Unique NameNO29G00630.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1870
Alignment locationchr29:240585..242454 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr29genomechr29:240585..242454 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO29G00630.1 vs.
Match: EWM21284.1 (GNAT domain protein [Nannochloropsis gaditana])

HSP 1 Score: 86.3 bits (212), Expect = 2.900e-13
Identity = 63/130 (48.46%), Postives = 79/130 (60.77%), Query Frame = 0 
Query:  110 AAPTSLLSLSLSSSPSSSLPAPFQTVNQKRNGRLVGFILAQLIPLAELSAEDSSLLLPLSPYPLLPSFLSTPPPIP-PAPATHAMYILTLGTRPDARRRGLGRSLLLQALGHSSITSSSTSCHSPLPPAT 239
            A P S  S   S+ PS  L  P    +  R GRL+G ILAQL+P +E + +D+ LLLP     L  S L   P  P P+P+THA+YILTLGTRPDARR+GL RSLLL+ L  +S+  S      P PP+T
Sbjct:  122 APPPSFPSCFNSTGPSPPLSPP---PSSSREGRLLGIILAQLLPFSECAPDDADLLLPAPR--LAHSLLPPLPTCPLPSPSTHALYILTLGTRPDARRQGLARSLLLRTLSQASLPPSP----PPSPPST 242
The following BLAST results are available for this feature:
BLAST of NO29G00630.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21284.12.900e-1348.46GNAT domain protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO29G00630NO29G00630Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO29G00630.1NO29G00630.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO29G00630.1.cds1NO29G00630.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO29G00630.1 ID=NO29G00630.1|Name=NO29G00630.1|organism=Nannochloropsis oceanica|type=mRNA|length=1870bp
ATGGTAGGGACATTGCAGCCATTGATAACACTGGTCGCGATGGAGGGAGA
GGAGGAGGAGCAGGAGCAGGGAGGGCGAAGAGGAGGAGAGAAGGAAGTGG
TGATGAAGACTACTAGACAGCTGGTGGCAACGAAGGAGGAGGAGGAGAAG
GAGGAGGAGGAGGAGGAGGAGGGAGGGCATATAGGAGGAGGGCAGGACAA
GGGGATCAGAAGCGGTTTAGCTCCCTCTTCAACCGCTTCTTCTTCCTCCC
CTTCCTCCTCTTTCTCTTCCGCTCCTTCCTCTCCGCTCTTCTCCTCCACT
TTTGTGAAGACACCAATACCATCAACTGCAGCACCTACCTCCCTGCTTTC
TCTCTCCTTGTCCTCCTCCCCCTCCTCCTCCCTTCCGGCCCCTTTCCAGA
CCGTAAATCAAAAACGAAACGGGCGCCTCGTCGGTTTCATCCTCGCTCAG
CTCATCCCCCTTGCCGAGCTCTCCGCCGAGGACTCCTCCCTTCTCCTCCC
CCTCTCTCCTTACCCGCTCCTCCCTTCTTTCCTCTCTACGCCTCCCCCTA
TCCCTCCCGCTCCTGCTACACACGCCATGTACATCCTCACGCTGGGCACA
CGTCCCGATGCCCGTCGAAGGGGCCTCGGTCGCTCCCTCCTCCTCCAAGC
CCTCGGCCACTCCTCCATCACATCCTCCTCCACGTCCTGCCATTCTCCCC
TCCCTCCGGCGACCAGCAGCTGTGGTACTGGGGGACAAGCCACCTCCACC
GCCGTCCCTTCCTCCTCCCCATCCTCCTTCTCTTCCTCCTCCAGCTGCAT
CACTACGTCAATCAGCATCCCCTCCTCCACCTCTTCCTCTCGCCTTCCCT
CCCTCCCTCCCTCCCCCTTCCCCCCCGTCACCCTTGGCCCGATCTCCCCC
CATGTCCTCCCTTCGAATCCCTTCCCCTCCCTCCCCCCCGCCCTTCCGCC
CTCCTCCTCCTCCCCCGTCGTTCTGGGGCTAGTCTACCTTCATGTCCTCC
CTTCCAACCGCCCCGCCATCAAATTTTACTCGAGTTTGAATTTTCAAAAT
AAAGGGCGGCTACCCAGATATTATATGATTAACGGGAAAGAAGAGGATGC
ATGGCTGTATGCCTGGGATGTCCAAAATGGGGAGTGCGGGAGGGGAGGAG
GGGTAGGGAGGATGTGGGAGGGAGTGGTGGAGAGCGTTTGGTTGTTGGCG
AGGGCGATGGTCTTATGGTTGAGGAGAGGGAGGGAGGGAGGGAGGGAGGG
GGTGCAGAGAAAGAAGGGGAGGATGGTGCCGTCTTCTTCTCGTTTGGAGG
AAGGTGGTGGTAATAGCAGCAGTAGAAGTAGTAGTAGCAGTAGTAGTAGT
AGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAG
TAGTATTGATACATTCACGACACCAAGCACACGAGCAGAGCTAGCAGTGT
GACAGACAAATGCGTGGCCAGTGTCTCGAAGAGCCCAAAATGACATCTAA
GTTTAAGTCAAAATTTCTCAAAATCCTTTCAAGTTCATATATCGTTTGCA
TCGTGCAGAGGTAATAATGAGGTGATGACGGCTGGCACAGAAGCAGACAC
GGCCTTGTCGTGTATTTCCATTTCGAAAGGAAGAACAACCTCAATAGACA
AAGCACAACCTAGAATGCATACTTGCGTGTGTATGTAAAACAAATCAAGG
CAGTGTAAACGTTTCAAAATTAAACATTTAGTGACGACTTAAGTTATTGT
TGATTTATAATTATTCAATAAATAATGCTAAAATTTTGCTTGAAAATCAA
CTTGATGGGACTAATGAGATGCATCAACAAGTCAAAATAGGGATAGATCA
GCAGGGCAAAATATACGCCA
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protein sequence of NO29G00630.1

>NO29G00630.1-protein ID=NO29G00630.1-protein|Name=NO29G00630.1|organism=Nannochloropsis oceanica|type=polypeptide|length=484bp
MVGTLQPLITLVAMEGEEEEQEQGGRRGGEKEVVMKTTRQLVATKEEEEK
EEEEEEEGGHIGGGQDKGIRSGLAPSSTASSSSPSSSFSSAPSSPLFSST
FVKTPIPSTAAPTSLLSLSLSSSPSSSLPAPFQTVNQKRNGRLVGFILAQ
LIPLAELSAEDSSLLLPLSPYPLLPSFLSTPPPIPPAPATHAMYILTLGT
RPDARRRGLGRSLLLQALGHSSITSSSTSCHSPLPPATSSCGTGGQATST
AVPSSSPSSFSSSSSCITTSISIPSSTSSSRLPSLPPSPFPPVTLGPISP
HVLPSNPFPSLPPALPPSSSSPVVLGLVYLHVLPSNRPAIKFYSSLNFQN
KGRLPRYYMINGKEEDAWLYAWDVQNGECGRGGGVGRMWEGVVESVWLLA
RAMVLWLRRGREGGREGVQRKKGRMVPSSSRLEEGGGNSSSRSSSSSSSS
SSSSSSSSSSSSSSSSSSIDTFTTPSTRAELAV*
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mRNA from alignment at chr29:240585..242454-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO29G00630.1 ID=NO29G00630.1|Name=NO29G00630.1|organism=Nannochloropsis oceanica|type=mRNA|length=1870bp|location=Sequence derived from alignment at chr29:240585..242454- (Nannochloropsis oceanica)
ATGGTAGGGACATTGCAGCCATTGATAACACTGGTCGCGATGGAGGGAGA
GGAGGAGGAGCAGGAGCAGGGAGGGCGAAGAGGAGGAGAGAAGGAAGTGG
TGATGAAGACTACTAGACAGCTGGTGGCAACGAAGGAGGAGGAGGAGAAG
GAGGAGGAGGAGGAGGAGGAGGGAGGGCATATAGGAGGAGGGCAGGACAA
GGGGATCAGAAGCGGTTTAGCTCCCTCTTCAACCGCTTCTTCTTCCTCCC
CTTCCTCCTCTTTCTCTTCCGCTCCTTCCTCTCCGCTCTTCTCCTCCACT
TTTGTGAAGACACCAATACCATCAACTGCAGCACCTACCTCCCTGCTTTC
TCTCTCCTTGTCCTCCTCCCCCTCCTCCTCCCTTCCGGCCCCTTTCCAGA
CCGTAAATCAAAAACGAAACGGGCGCCTCGTCGGTTTCATCCTCGCTCAG
CTCATCCCCCTTGCCGAGCTCTCCGCCGAGGACTCCTCCCTTCTCCTCCC
CCTCTCTCCTTACCCGCTCCTCCCTTCTTTCCTCTCTACGCCTCCCCCTA
TCCCTCCCGCTCCTGCTACACACGCCATGTACATCCTCACGCTGGGCACA
CGTCCCGATGCCCGTCGAAGGGGCCTCGGTCGCTCCCTCCTCCTCCAAGC
CCTCGGCCACTCCTCCATCACATCCTCCTCCACGTCCTGCCATTCTCCCC
TCCCTCCGGCGACCAGCAGCTGTGGTACTGGGGGACAAGCCACCTCCACC
GCCGTCCCTTCCTCCTCCCCATCCTCCTTCTCTTCCTCCTCCAGCTGCAT
CACTACGTCAATCAGCATCCCCTCCTCCACCTCTTCCTCTCGCCTTCCCT
CCCTCCCTCCCTCCCCCTTCCCCCCCGTCACCCTTGGCCCGATCTCCCCC
CATGTCCTCCCTTCGAATCCCTTCCCCTCCCTCCCCCCCGCCCTTCCGCC
CTCCTCCTCCTCCCCCGTCGTTCTGGGGCTAGTCTACCTTCATGTCCTCC
CTTCCAACCGCCCCGCCATCAAATTTTACTCGAGTTTGAATTTTCAAAAT
AAAGGGCGGCTACCCAGATATTATATGATTAACGGGAAAGAAGAGGATGC
ATGGCTGTATGCCTGGGATGTCCAAAATGGGGAGTGCGGGAGGGGAGGAG
GGGTAGGGAGGATGTGGGAGGGAGTGGTGGAGAGCGTTTGGTTGTTGGCG
AGGGCGATGGTCTTATGGTTGAGGAGAGGGAGGGAGGGAGGGAGGGAGGG
GGTGCAGAGAAAGAAGGGGAGGATGGTGCCGTCTTCTTCTCGTTTGGAGG
AAGGTGGTGGTAATAGCAGCAGTAGAAGTAGTAGTAGCAGTAGTAGTAGT
AGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAG
TAGTATTGATACATTCACGACACCAAGCACACGAGCAGAGCTAGCAGTGT
GACAGACAAATGCGTGGCCAGTGTCTCGAAGAGCCCAAAATGACATCTAA
GTTTAAGTCAAAATTTCTCAAAATCCTTTCAAGTTCATATATCGTTTGCA
TCGTGCAGAGGTAATAATGAGGTGATGACGGCTGGCACAGAAGCAGACAC
GGCCTTGTCGTGTATTTCCATTTCGAAAGGAAGAACAACCTCAATAGACA
AAGCACAACCTAGAATGCATACTTGCGTGTGTATGTAAAACAAATCAAGG
CAGTGTAAACGTTTCAAAATTAAACATTTAGTGACGACTTAAGTTATTGT
TGATTTATAATTATTCAATAAATAATGCTAAAATTTTGCTTGAAAATCAA
CTTGATGGGACTAATGAGATGCATCAACAAGTCAAAATAGGGATAGATCA
GCAGGGCAAAATATACGCCA
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Coding sequence (CDS) from alignment at chr29:240585..242454-

>NO29G00630.1 ID=NO29G00630.1|Name=NO29G00630.1|organism=Nannochloropsis oceanica|type=CDS|length=1452bp|location=Sequence derived from alignment at chr29:240585..242454- (Nannochloropsis oceanica)
ATGGTAGGGACATTGCAGCCATTGATAACACTGGTCGCGATGGAGGGAGA
GGAGGAGGAGCAGGAGCAGGGAGGGCGAAGAGGAGGAGAGAAGGAAGTGG
TGATGAAGACTACTAGACAGCTGGTGGCAACGAAGGAGGAGGAGGAGAAG
GAGGAGGAGGAGGAGGAGGAGGGAGGGCATATAGGAGGAGGGCAGGACAA
GGGGATCAGAAGCGGTTTAGCTCCCTCTTCAACCGCTTCTTCTTCCTCCC
CTTCCTCCTCTTTCTCTTCCGCTCCTTCCTCTCCGCTCTTCTCCTCCACT
TTTGTGAAGACACCAATACCATCAACTGCAGCACCTACCTCCCTGCTTTC
TCTCTCCTTGTCCTCCTCCCCCTCCTCCTCCCTTCCGGCCCCTTTCCAGA
CCGTAAATCAAAAACGAAACGGGCGCCTCGTCGGTTTCATCCTCGCTCAG
CTCATCCCCCTTGCCGAGCTCTCCGCCGAGGACTCCTCCCTTCTCCTCCC
CCTCTCTCCTTACCCGCTCCTCCCTTCTTTCCTCTCTACGCCTCCCCCTA
TCCCTCCCGCTCCTGCTACACACGCCATGTACATCCTCACGCTGGGCACA
CGTCCCGATGCCCGTCGAAGGGGCCTCGGTCGCTCCCTCCTCCTCCAAGC
CCTCGGCCACTCCTCCATCACATCCTCCTCCACGTCCTGCCATTCTCCCC
TCCCTCCGGCGACCAGCAGCTGTGGTACTGGGGGACAAGCCACCTCCACC
GCCGTCCCTTCCTCCTCCCCATCCTCCTTCTCTTCCTCCTCCAGCTGCAT
CACTACGTCAATCAGCATCCCCTCCTCCACCTCTTCCTCTCGCCTTCCCT
CCCTCCCTCCCTCCCCCTTCCCCCCCGTCACCCTTGGCCCGATCTCCCCC
CATGTCCTCCCTTCGAATCCCTTCCCCTCCCTCCCCCCCGCCCTTCCGCC
CTCCTCCTCCTCCCCCGTCGTTCTGGGGCTAGTCTACCTTCATGTCCTCC
CTTCCAACCGCCCCGCCATCAAATTTTACTCGAGTTTGAATTTTCAAAAT
AAAGGGCGGCTACCCAGATATTATATGATTAACGGGAAAGAAGAGGATGC
ATGGCTGTATGCCTGGGATGTCCAAAATGGGGAGTGCGGGAGGGGAGGAG
GGGTAGGGAGGATGTGGGAGGGAGTGGTGGAGAGCGTTTGGTTGTTGGCG
AGGGCGATGGTCTTATGGTTGAGGAGAGGGAGGGAGGGAGGGAGGGAGGG
GGTGCAGAGAAAGAAGGGGAGGATGGTGCCGTCTTCTTCTCGTTTGGAGG
AAGGTGGTGGTAATAGCAGCAGTAGAAGTAGTAGTAGCAGTAGTAGTAGT
AGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAG
TAGTATTGATACATTCACGACACCAAGCACACGAGCAGAGCTAGCAGTGT
GA
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Synonyms
Publications