NO28G01810, NO28G01810 (gene) Nannochloropsis oceanica

Overview
NameNO28G01810
Unique NameNO28G01810
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2603
Alignment locationchr28:581596..584198 -

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Properties
Property NameValue
DescriptionDynein intermediate chain 2, axonemal
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:581596..584198 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036322WD40_repeat_dom_sf
IPR001680WD40_repeat
Homology
BLAST of NO28G01810 vs. NCBI_GenBank
Match: XP_005855875.1 (dynein intermediate chain 2, axonemal [Nannochloropsis gaditana CCMP526] >EKU20484.1 dynein intermediate chain 2, axonemal [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 646.0 bits (1665), Expect = 1.500e-181
Identity = 377/676 (55.77%), Postives = 430/676 (63.61%), Query Frame = 0
Query:   84 MRHVEGGWPKDVDPTEQADVTRFRKKAEKDDEYKAALKVLGPLVSRCMKQNGTVDIYEEYFVGGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPIMSG-MAGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEPLLAKGLAVFRDPSPVKRPAIALNWHPEGQGKLAVAYCGLGFQDPRFTSATSKSSYIWDIHSPNRPELELCPPSPLTSLRFNPKSPDTLLGGCQNGLVCFFDLRRQGGGVAGREGGREGVVGEASFLECSHHDPVRDVFWISSKTGHQCVSISTDGRMLWWDTRRLAEPTDDLPLSL---PSLGPSPCGATALDYSLEGGPTKYLIGTEQGLILSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCSGLQVSDPYFLHKHHGAILSLQRNPAHPKFYLTIGDWRAALWTEDLRSPIFTTPFLSSPLMAGCWSPTRPGVFFVARKDGMVEGWDLLSRQGERAFAHKVGDTALTSLAIQGPSSSTSAP--------CNSLP-EEGKEGGSGRLMAVGDEGGTVALLELCAGLSDYQAGEKAAVGAMLDRAMRAEK--YLEVKEREGRRAKTAVAEEGGREGGRAGEKESVAGREEKMEELLRKVDADFLSMIKDAED-DEAGGRRE 744
            MRHVEGGWPKDVD TEQADV RFRKKAEKDDE K ALK+LGP+V+RCMKQN T+DIY+EYFVG                                        S +  G ++G                                 SE    KGLAVFRDPS +KRP  +LNWHP+GQGKLAVAYCGLGFQDPR++SA+ +SS++WDI+SPNRP++EL PPSPLTSLRFNPK PDTLLGGCQNGLVC FDLR+QG G A      +GVVGEAS LE SHHDPVRDVFWISSKTGHQCVSISTDG+MLWWDTR L +PTD LPL L   PSL  S  GATALDYSLE GPTKYLIGTEQGL+LS                                  XXXXXXXXXXXXXXXXXXXX  GL  SDP  LHKH+G ILSL RNP HPKFY ++GDWRA+ W +D+RSP+F+TPFL  P+ AGCWSPTRP +FF+AR+DGM+EGWD   +QGE+ F+HKVGDT +T+LAIQG S+S+  P          S+P   G E G GRLMAVGDEGGTVALLELC GLS+ QAGEKAA+GA+L+R MR EK                                                 DADFLSMIK+AE+  EAG  +E
Sbjct:    1 MRHVEGGWPKDVDHTEQADVARFRKKAEKDDECKVALKLLGPVVARCMKQNATIDIYQEYFVG-----------------ECREKESGRDREGVGADYVDQGSSSVGGGEISGPSGVFLKGGGGTNTTVGGAYLHGNPSRYYQEHASESFTGKGLAVFRDPSSLKRPIASLNWHPDGQGKLAVAYCGLGFQDPRWSSASPRSSFVWDINSPNRPDVELSPPSPLTSLRFNPKVPDTLLGGCQNGLVCVFDLRKQGSGGAXXXXXXQGVVGEASLLEHSHHDPVRDVFWISSKTGHQCVSISTDGQMLWWDTRHLTQPTDALPLLLPLGPSLPSSLLGATALDYSLEAGPTKYLIGTEQGLVLS---------------LNLRNRRHQQQPPSSPSLVXXXXXXXXXXXXXXXXXXXXXXGLLASDPSPLHKHYGPILSLHRNPTHPKFYASVGDWRASFWADDVRSPLFSTPFLPMPITAGCWSPTRPSLFFLARQDGMLEGWDFFEKQGEKVFSHKVGDTPITALAIQGGSTSSLPPSATSSVLRAASMPWTGGNEAGGGRLMAVGDEGGTVALLELCRGLSECQAGEKAAMGALLEREMRVEKNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDADFLSMIKEAEETGEAGSDKE 644          
BLAST of NO28G01810 vs. NCBI_GenBank
Match: CBN74276.1 (putative, Dynein intermediate chain [Ectocarpus siliculosus])

HSP 1 Score: 542.3 bits (1396), Expect = 2.300e-150
Identity = 320/747 (42.84%), Postives = 410/747 (54.89%), Query Frame = 0
Query:    1 MEISYQYSKSRASFGHDVRQTLQDAPTSVLLAMPSLPPISSXXXXXXXXXXXXXXPCSVSVSTIPQMSAHTVNTERCVLKSTSMRHVEGGWPKDVDPTEQADVTRFRKKAEKDDEYKAALKVLGPLVSRCMKQNGTVDIYEEYFVGGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPIMSGMAGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEPLLAKGLAVFRDPSPV---KRPAIALNWHPEGQGKLAVAYCGLGFQDPRFTSATSK-SSYIWDIHSPNRPELELCPPSPLTSLRFNPKSPDTLLGGCQNGLVCFFDLRRQGGGVAGREGGREGVVGEASFLECSHHDPVRDVFWISSKTGHQCVSISTDGRMLWWDTRRLAEPTDDLPLSLPSLGPS-PCGATALDYSLEGGPTKYLIGTEQGLILSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCSGLQVSDPYFLHKHHGAILSLQRNPAHPKFYLTIGDWRAALWTEDLRSPIFTTPFLSSPLMAGCWSPTRPGVFFVARKDGMVEGWDLLSRQGERAFAHKVGDTALTSLAIQGPSSSTSAPCNSLPEEGKEGGSGRLMAVGDEGGTVALLELCAGLSDYQAG--EKAAVGAMLDRAMRAEKYLEVKEREGRRAKTAVAEEGGREGGRAGEKESVAGREEKMEELLRKVDADFLSMIKDAEDDEAGG 741
            ME++Y Y+K R+ FG     + +D P  +L  +P                     P    + T P MS H  NTER + K TSMRHVEGGWPKDVD TEQ+DV RFRKKAEKD++YK A+K LGP++ RCMKQN T+DIYEEYF G                                                                                  SEP  AKGLAVFRDP+ V   KR A ++NWHP+G  K+AV+Y  L FQDPRF +A     SY+WD  +PN P++ L PPSPL  LRFNPKS D L+GG  NGL+ FFDLR+ G  +       + V  E S +E SHHDPV DVFWISSKTG+QC S+STDG+M+WWDTRRL EPTD L L+  S G     G ++++Y+ E GPTKYL+GTEQG++L                                                        +G+ V D     KHHG I S+QRNP   K+++T+GDW A +W EDL++PI TT + S+ L +GC+SPTR GVFFV R DG+V+ WD   RQ E A++HKVGD  L+S+++QG                     G+L+AVGD  GTV+LLE+C  L+   AG  EK A+GAM +R M+ EK LE++ER+ RRAK   AE+  +    A +K+   G++E+MEELLRKVDADFL+MIK+AEDDE+ G
Sbjct:    1 MEVAYLYTKVRSEFGKHC--SFKDVPAFLLETVPCSTEYDD--------NYVARNPSVAELDTSPHMSEHEANTERLITKHTSMRHVEGGWPKDVDFTEQSDVNRFRKKAEKDEDYKIAIKSLGPIIGRCMKQNNTIDIYEEYFDGDE----------------------------------------------------------------------------VDHSSEPPSAKGLAVFRDPNAVNGIKRTATSINWHPDGPTKIAVSYSILNFQDPRFMNARMPVQSYVWDTMNPNTPDVALTPPSPLCCLRFNPKSTDNLVGGSYNGLINFFDLRKPGATIG------QAVPLETSVIEKSHHDPVYDVFWISSKTGNQCASVSTDGQMMWWDTRRLGEPTDTLQLATDSKGGGMVLGGSSMEYNQEAGPTKYLVGTEQGIVLQVNLRNRKQN----------------------------------------------NGISVFD-MGAGKHHGPIYSIQRNPTQNKYFMTVGDWTARIWAEDLKTPIMTTKYHSAYLTSGCFSPTRAGVFFVTRMDGVVDIWDYFYRQNEVAYSHKVGDAPLSSISVQGNVQV----------------GGKLVAVGDVNGTVSLLEVCESLA-VSAGSQEKGAIGAMFEREMKQEKNLELRERDLRRAK--AAEQDAKNKADAEKKD---GKDERMEELLRKVDADFLAMIKEAEDDESKG 586          
BLAST of NO28G01810 vs. NCBI_GenBank
Match: GAY04376.1 (Hypothetical protein PINS_012185 [Pythium insidiosum])

HSP 1 Score: 515.0 bits (1325), Expect = 3.900e-142
Identity = 306/736 (41.58%), Postives = 389/736 (52.85%), Query Frame = 0
Query:    1 MEISYQYSKSRASFGHDVRQTLQDAPTSVLLAMPSLPPISSXXXXXXXXXXXXXXPCSVSVSTIPQMSAHTVNTERCVLKSTSMRHVEGGWPKDVDPTEQADVTRFRKKAEKDDEYKAALKVLGPLVSRCMKQNGTVDIYEEYFVGGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPIMSGMAGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEPLLAKGLAVFRDPSPVKRPAIALNWHPEGQGKLAVAYCGLGFQDPRFTSA-TSKSSYIWDIHSPNRPELELCPPSPLTSLRFNPKSPDTLLGGCQNGLVCFFDLRRQGGGVAGREGGREGVVGEASFLECSHHDPVRDVFWISSKTGHQCVSISTDGRMLWWDTRRLAEPTDDLPLSLPSLGPSPCGATALDYSLEGGPTKYLIGTEQGLILSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCSGLQVSDPYFLHKHHGAILSLQRNPAHPKFYLTIGDWRAALWTEDLRSPIFTTPFLSSPLMAGCWSPTRPGVFFVARKDGMVEGWDLLSRQGERAFAHKVGDTALTSLAIQGPSSSTSAPCNSLPEEGKEGGSGRLMAVGDEGGTVALLELCAGLSDYQAGEKAAVGAMLDRAMRAEKYLEVKEREGRRAKTAVAEEGGREGGRAGEKESVAGREEKMEELLRKVDADFLSMIKDAED 736
            ME++Y Y+K R++FG        DA   VL  +PS   + S              P    + T P MS H VNTER + K +SMRHVEGGWPKDVDP EQ+DV RFRKKAEKDD++K A+K LGP+V R +KQN T++IY++YF                                                                                    +E   AKGLAVFRDP PVKR    ++WHPE   K+A  YC L FQDP+F+SA    +SYIWD+ +PN PE  L P SPL  +R+NPKS D L+ G  NGL+ FFDLR+ G   A           E S +E SHHDPV DVFWISSKTG+QC S+STDG MLWWD R LA+PT    + L        G ++++Y+ E GPTKYL+GTEQG++LS                                                       +G+ V D     KHHG I S+QRNP H KF++TIGDW A LW EDL++PI +T +  S + AGCWSPTR GVFFV R DG+V+ WD   RQ E A++HKVGD AL+++++QG +SS                 G+L AVGD  G ++L+EL  GL+  Q  EKAA+  M +R  + EK LE KE+E +R K A+AEEG  E   +  K      ++KMEELLR VDA+FL MIK+AED
Sbjct:    1 MELAYLYTKPRSTFGRHCDFKSVDA--KVLETIPSTDTLES--------DYVKRRPMVTRLDTTPDMSEHEVNTERLITKHSSMRHVEGGWPKDVDPAEQSDVQRFRKKAEKDDDFKQAVKFLGPVVDRALKQNNTINIYQDYFA----------------------------------------------------------------------------HMGEPATTEQPSAKGLAVFRDPEPVKRTISKIDWHPESPAKMAACYCILHFQDPKFSSARMPANSYIWDVMNPNTPETTLRPASPLVCMRYNPKSVDQLVAGSYNGLLTFFDLRKSGATPA-----------ETSVIEHSHHDPVYDVFWISSKTGNQCCSVSTDGWMLWWDIRHLAQPTH--KILLHDKDGLSFGGSSMEYNTEAGPTKYLVGTEQGVVLSINLRNAKQN----------------------------------------------NGITVYDT-GAGKHHGPIYSIQRNPTHNKFFMTIGDWTARLWCEDLKTPIMSTAYHDSYVTAGCWSPTRAGVFFVTRMDGVVDIWDFFYRQNEVAYSHKVGDVALSAISVQGNASS----------------GGKLFAVGDVNGMISLMELSDGLATLQPNEKAAINGMFERETKREKNLEAKEKEMKRRK-AMAEEGKHEDNGSSHK------DDKMEELLRTVDANFLGMIKEAED 567          
BLAST of NO28G01810 vs. NCBI_GenBank
Match: ETI52142.1 (hypothetical protein F443_04661 [Phytophthora parasitica P1569] >ETL45412.1 hypothetical protein L916_04500 [Phytophthora parasitica] >ETL98591.1 hypothetical protein L917_04379 [Phytophthora parasitica] >ETO80916.1 hypothetical protein F444_04692 [Phytophthora parasitica P1976] >ETP21944.1 hypothetical protein F441_04648 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 513.8 bits (1322), Expect = 8.700e-142
Identity = 305/738 (41.33%), Postives = 387/738 (52.44%), Query Frame = 0
Query:    1 MEISYQYSKSRASFGHDVRQTLQDAPTSVLLAMPSLPPISSXXXXXXXXXXXXXXPCSVSVSTIPQMSAHTVNTERCVLKSTSMRHVEGGWPKDVDPTEQADVTRFRKKAEKDDEYKAALKVLGPLVSRCMKQNGTVDIYEEYFVGGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPIMSGMAGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEPLLAKGLAVFRDPSPVKRPAIALNWHPEGQGKLAVAYCGLGFQDPRFTSA-TSKSSYIWDIHSPNRPELELCPPSPLTSLRFNPKSPDTLLGGCQNGLVCFFDLRRQGGGVAGREGGREGVVGEASFLECSHHDPVRDVFWISSKTGHQCVSISTDGRMLWWDTRRLAEPTDDLPLSLPSLGPSPCGATALDYSLEGGPTKYLIGTEQGLILSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCSGLQVSDPYFLHKHHGAILSLQRNPAHPKFYLTIGDWRAALWTEDLRSPIFTTPFLSSPLMAGCWSPTRPGVFFVARKDGMVEGWDLLSRQGERAFAHKVGDTALTSLAIQGPSSSTSAPCNSLPEEGKEGGSGRLMAVGDEGGTVALLELCAGLSDYQAGEKAAVGAMLDRAMRAEKYLEVKEREGRRAKTAVAEEGGREGGRAGEKESVAGREEKMEELLRKVDADFLSMIKDAEDDE 738
            ME++Y Y+K R SFG       ++    VL ++P    + +              P    + T P MS H VNTER V K +SMRHVEGGWPKDVDP EQ+DV RFRKKAEKDD+YK A+K LGP+V R +KQN T++IY++YF                                                                                    +E   AKGLAVFRDP PVKR    ++WHPE   K+A  YC L FQDP+F SA    +SYIWD+ +PN PE  L P SPL  +R+NPKS D L+ G  NGL+ FFDLR+ G   A           E S +E SHHDPV DVFWISSKTG+QC S+STDG MLWWD R LA+PT  L L+         G ++++Y+ E GPTKYL+GTEQG +LS                                                       +G+ + D     KHHGA+ ++QRNP H KF+LTIGDW A LW EDL++PI +T +  S + AGCWSPTR GVFFV R DG+V+ WD   RQ E A++HKVGD AL+S+++Q                G  G  G+L+AVGD  G ++L+EL  GL+  Q  EKAA+  M +R  + EK LE KE+E RR K A  EEG      A +    + +++KMEELLR VDA+FL MIK+AED E
Sbjct:    1 MELAYLYTKQRESFGRYC--DFRNVDAKVLESIPCTDALEN--------DYVRRRPMVTRLDTTPHMSEHEVNTERLVTKHSSMRHVEGGWPKDVDPAEQSDVQRFRKKAEKDDDYKQAVKCLGPVVDRALKQNNTINIYQDYFA----------------------------------------------------------------------------HMGEAATTEQPSAKGLAVFRDPEPVKRTVSQIDWHPESPQKMAACYCILNFQDPKFASARLPANSYIWDVLNPNTPETTLKPASPLVCMRYNPKSVDQLVAGSYNGLISFFDLRKSGAAPA-----------ETSIIEHSHHDPVYDVFWISSKTGNQCCSVSTDGWMLWWDIRHLAQPTHKLLLT--DKDGLAFGGSSMEYNTEAGPTKYLVGTEQGAVLSVNLRNAKQN----------------------------------------------NGITMYD-IGAGKHHGAVCAIQRNPTHNKFFLTIGDWTARLWCEDLKTPIMSTIYHDSYVTAGCWSPTRTGVFFVTRMDGVVDIWDFFYRQNEVAYSHKVGDVALSSVSVQ----------------GNAGSGGKLVAVGDCNGMISLMELSDGLAVSQPNEKAAINGMFERETKREKNLEAKEKELRR-KKATMEEG------AADDRGGSLKDDKMEELLRTVDANFLGMIKEAEDSE 569          
BLAST of NO28G01810 vs. NCBI_GenBank
Match: ETK92030.1 (hypothetical protein L915_04546 [Phytophthora parasitica])

HSP 1 Score: 513.8 bits (1322), Expect = 8.700e-142
Identity = 305/738 (41.33%), Postives = 387/738 (52.44%), Query Frame = 0
Query:    1 MEISYQYSKSRASFGHDVRQTLQDAPTSVLLAMPSLPPISSXXXXXXXXXXXXXXPCSVSVSTIPQMSAHTVNTERCVLKSTSMRHVEGGWPKDVDPTEQADVTRFRKKAEKDDEYKAALKVLGPLVSRCMKQNGTVDIYEEYFVGGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPIMSGMAGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEPLLAKGLAVFRDPSPVKRPAIALNWHPEGQGKLAVAYCGLGFQDPRFTSA-TSKSSYIWDIHSPNRPELELCPPSPLTSLRFNPKSPDTLLGGCQNGLVCFFDLRRQGGGVAGREGGREGVVGEASFLECSHHDPVRDVFWISSKTGHQCVSISTDGRMLWWDTRRLAEPTDDLPLSLPSLGPSPCGATALDYSLEGGPTKYLIGTEQGLILSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCSGLQVSDPYFLHKHHGAILSLQRNPAHPKFYLTIGDWRAALWTEDLRSPIFTTPFLSSPLMAGCWSPTRPGVFFVARKDGMVEGWDLLSRQGERAFAHKVGDTALTSLAIQGPSSSTSAPCNSLPEEGKEGGSGRLMAVGDEGGTVALLELCAGLSDYQAGEKAAVGAMLDRAMRAEKYLEVKEREGRRAKTAVAEEGGREGGRAGEKESVAGREEKMEELLRKVDADFLSMIKDAEDDE 738
            ME++Y Y+K R SFG       ++    VL ++P    + +              P    + T P MS H VNTER V K +SMRHVEGGWPKDVDP EQ+DV RFRKKAEKDD+YK A+K LGP+V R +KQN T++IY++YF                                                                                    +E   AKGLAVFRDP PVKR    ++WHPE   K+A  YC L FQDP+F SA    +SYIWD+ +PN PE  L P SPL  +R+NPKS D L+ G  NGL+ FFDLR+ G   A           E S +E SHHDPV DVFWISSKTG+QC S+STDG MLWWD R LA+PT  L L+         G ++++Y+ E GPTKYL+GTEQG +LS                                                       +G+ + D     KHHGA+ ++QRNP H KF+LTIGDW A LW EDL++PI +T +  S + AGCWSPTR GVFFV R DG+V+ WD   RQ E A++HKVGD AL+S+++Q                G  G  G+L+AVGD  G ++L+EL  GL+  Q  EKAA+  M +R  + EK LE KE+E RR K A  EEG      A +    + +++KMEELLR VDA+FL MIK+AED E
Sbjct:    1 MELAYLYTKQRESFGRYC--DFRNVDAKVLESIPCTDALEN--------DYVRRRPMVTRLDTTPHMSEHEVNTERLVTKHSSMRHVEGGWPKDVDPAEQSDVQRFRKKAEKDDDYKQAVKCLGPVVDRALKQNNTINIYQDYFA----------------------------------------------------------------------------HMGEAATTEQPSAKGLAVFRDPEPVKRTVSQIDWHPESPQKMAACYCILNFQDPKFASARLPANSYIWDVLNPNTPETTLKPASPLVCMRYNPKSVDQLVAGSYNGLISFFDLRKSGAAPA-----------ETSIIEHSHHDPVYDVFWISSKTGNQCCSVSTDGWMLWWDIRHLAQPTHKLLLT--DKDGLAFGGSSMEYNTEAGPTKYLVGTEQGAVLSVNLRNAKQN----------------------------------------------NGITMYD-IGAGKHHGAVCAIQRNPTHNKFFLTIGDWTARLWCEDLKTPIMSTIYHDSYVTAGCWSPTRAGVFFVTRMDGVVDIWDFFYRQNEVAYSHKVGDVALSSVSVQ----------------GNAGSGGKLVAVGDCNGMISLMELSDGLAVSQPNEKAAINGMFERETKREKNLEAKEKELRR-KKATMEEG------AADDRGGSLKDDKMEELLRTVDANFLGMIKEAEDSE 569          
BLAST of NO28G01810 vs. NCBI_GenBank
Match: ETM51758.1 (hypothetical protein L914_04480 [Phytophthora parasitica] >ETP49849.1 hypothetical protein F442_04709 [Phytophthora parasitica P10297] >KUF88576.1 Dynein intermediate chain 3 [Phytophthora nicotianae])

HSP 1 Score: 513.8 bits (1322), Expect = 8.700e-142
Identity = 305/738 (41.33%), Postives = 387/738 (52.44%), Query Frame = 0
Query:    1 MEISYQYSKSRASFGHDVRQTLQDAPTSVLLAMPSLPPISSXXXXXXXXXXXXXXPCSVSVSTIPQMSAHTVNTERCVLKSTSMRHVEGGWPKDVDPTEQADVTRFRKKAEKDDEYKAALKVLGPLVSRCMKQNGTVDIYEEYFVGGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPIMSGMAGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEPLLAKGLAVFRDPSPVKRPAIALNWHPEGQGKLAVAYCGLGFQDPRFTSA-TSKSSYIWDIHSPNRPELELCPPSPLTSLRFNPKSPDTLLGGCQNGLVCFFDLRRQGGGVAGREGGREGVVGEASFLECSHHDPVRDVFWISSKTGHQCVSISTDGRMLWWDTRRLAEPTDDLPLSLPSLGPSPCGATALDYSLEGGPTKYLIGTEQGLILSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCSGLQVSDPYFLHKHHGAILSLQRNPAHPKFYLTIGDWRAALWTEDLRSPIFTTPFLSSPLMAGCWSPTRPGVFFVARKDGMVEGWDLLSRQGERAFAHKVGDTALTSLAIQGPSSSTSAPCNSLPEEGKEGGSGRLMAVGDEGGTVALLELCAGLSDYQAGEKAAVGAMLDRAMRAEKYLEVKEREGRRAKTAVAEEGGREGGRAGEKESVAGREEKMEELLRKVDADFLSMIKDAEDDE 738
            ME++Y Y+K R SFG       ++    VL ++P    + +              P    + T P MS H VNTER V K +SMRHVEGGWPKDVDP EQ+DV RFRKKAEKDD+YK A+K LGP+V R +KQN T++IY++YF                                                                                    +E   AKGLAVFRDP PVKR    ++WHPE   K+A  YC L FQDP+F SA    +SYIWD+ +PN PE  L P SPL  +R+NPKS D L+ G  NGL+ FFDLR+ G   A           E S +E SHHDPV DVFWISSKTG+QC S+STDG MLWWD R LA+PT  L L+         G ++++Y+ E GPTKYL+GTEQG +LS                                                       +G+ + D     KHHGA+ ++QRNP H KF+LTIGDW A LW EDL++PI +T +  S + AGCWSPTR GVFFV R DG+V+ WD   RQ E A++HKVGD AL+S+++Q                G  G  G+L+AVGD  G ++L+EL  GL+  Q  EKAA+  M +R  + EK LE KE+E RR K A  EEG      A +    + +++KMEELLR VDA+FL MIK+AED E
Sbjct:    1 MELAYLYTKQRESFGRYC--DFRNVDAKVLESIPCTDALEN--------DYVRRRPMVTRLDTTPHMSEHEVNTERLVTKHSSMRHVEGGWPKDVDPAEQSDVQRFRKKAEKDDDYKQAVKCLGPVVDRALKQNNTINIYQDYFA----------------------------------------------------------------------------HMGEAATTEQPSAKGLAVFRDPEPVKRTVSQIDWHPESPQKMAACYCILNFQDPKFASARLPANSYIWDVLNPNTPETTLKPASPLVCMRYNPKSVDQLVAGSYNGLISFFDLRKSGAAPA-----------ETSIIEHSHHDPVYDVFWISSKTGNQCCSVSTDGWMLWWDIRHLAQPTHKLLLT--DKDGLAFGGSSMEYNTEAGPTKYLVGTEQGAVLSVNLRNAKQN----------------------------------------------NGITMYD-IGAGKHHGAVCAIQRNPTHNKFFLTIGDWTARLWCEDLKTPIMSTIYHDSYVTAGCWSPTRAGVFFVTRMDGVVDIWDFFYRQNEVAYSHKVGDVALSSVSVQ----------------GNAGSGGKLVAVGDCNGMISLMELSDGLAVSQPNEKAAINGMFERETKREKNLEAKEKELRR-KKATMEEG------AADDRGGSLKDDKMEELLRTVDANFLGMIKEAEDSE 569          
BLAST of NO28G01810 vs. NCBI_GenBank
Match: XP_008901961.1 (hypothetical protein PPTG_08960 [Phytophthora parasitica INRA-310] >ETN12957.1 hypothetical protein PPTG_08960 [Phytophthora parasitica INRA-310])

HSP 1 Score: 513.8 bits (1322), Expect = 8.700e-142
Identity = 305/738 (41.33%), Postives = 387/738 (52.44%), Query Frame = 0
Query:    1 MEISYQYSKSRASFGHDVRQTLQDAPTSVLLAMPSLPPISSXXXXXXXXXXXXXXPCSVSVSTIPQMSAHTVNTERCVLKSTSMRHVEGGWPKDVDPTEQADVTRFRKKAEKDDEYKAALKVLGPLVSRCMKQNGTVDIYEEYFVGGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPIMSGMAGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEPLLAKGLAVFRDPSPVKRPAIALNWHPEGQGKLAVAYCGLGFQDPRFTSA-TSKSSYIWDIHSPNRPELELCPPSPLTSLRFNPKSPDTLLGGCQNGLVCFFDLRRQGGGVAGREGGREGVVGEASFLECSHHDPVRDVFWISSKTGHQCVSISTDGRMLWWDTRRLAEPTDDLPLSLPSLGPSPCGATALDYSLEGGPTKYLIGTEQGLILSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCSGLQVSDPYFLHKHHGAILSLQRNPAHPKFYLTIGDWRAALWTEDLRSPIFTTPFLSSPLMAGCWSPTRPGVFFVARKDGMVEGWDLLSRQGERAFAHKVGDTALTSLAIQGPSSSTSAPCNSLPEEGKEGGSGRLMAVGDEGGTVALLELCAGLSDYQAGEKAAVGAMLDRAMRAEKYLEVKEREGRRAKTAVAEEGGREGGRAGEKESVAGREEKMEELLRKVDADFLSMIKDAEDDE 738
            ME++Y Y+K R SFG       ++    VL ++P    + +              P    + T P MS H VNTER V K +SMRHVEGGWPKDVDP EQ+DV RFRKKAEKDD+YK A+K LGP+V R +KQN T++IY++YF                                                                                    +E   AKGLAVFRDP PVKR    ++WHPE   K+A  YC L FQDP+F SA    +SYIWD+ +PN PE  L P SPL  +R+NPKS D L+ G  NGL+ FFDLR+ G   A           E S +E SHHDPV DVFWISSKTG+QC S+STDG MLWWD R LA+PT  L L+         G ++++Y+ E GPTKYL+GTEQG +LS                                                       +G+ + D     KHHGA+ ++QRNP H KF+LTIGDW A LW EDL++PI +T +  S + AGCWSPTR GVFFV R DG+V+ WD   RQ E A++HKVGD AL+S+++Q                G  G  G+L+AVGD  G ++L+EL  GL+  Q  EKAA+  M +R  + EK LE KE+E RR K A  EEG      A +    + +++KMEELLR VDA+FL MIK+AED E
Sbjct:    1 MELAYLYTKQRESFGRYC--DFRNVDAKVLESIPCTDALEN--------DYVRRRPMVTRLDTTPHMSEHEVNTERLVTKHSSMRHVEGGWPKDVDPAEQSDVQRFRKKAEKDDDYKQAVKCLGPVVDRALKQNNTINIYQDYFA----------------------------------------------------------------------------HMGEAATTEQPSAKGLAVFRDPEPVKRTVSQIDWHPESPQKMAACYCILNFQDPKFASARLPANSYIWDVLNPNTPETTLKPASPLVCMRYNPKSVDQLVSGSYNGLISFFDLRKSGAAPA-----------ETSIIEHSHHDPVYDVFWISSKTGNQCCSVSTDGWMLWWDIRHLAQPTHKLLLT--DKDGLAFGGSSMEYNTEAGPTKYLVGTEQGAVLSVNLRNAKQN----------------------------------------------NGITMYD-IGAGKHHGAVCAIQRNPTHNKFFLTIGDWTARLWCEDLKTPIMSTIYHDSYVTAGCWSPTRAGVFFVTRMDGVVDIWDFFYRQNEVAYSHKVGDVALSSVSVQ----------------GNAGSGGKLVAVGDCNGMISLMELSDGLAVSQPNEKAAINGMFERETKREKNLEAKEKELRR-KKATMEEG------AADDRGGSLKDDKMEELLRTVDANFLGMIKEAEDSE 569          
BLAST of NO28G01810 vs. NCBI_GenBank
Match: XP_009042544.1 (hypothetical protein AURANDRAFT_34917 [Aureococcus anophagefferens] >EGB02757.1 hypothetical protein AURANDRAFT_34917 [Aureococcus anophagefferens])

HSP 1 Score: 512.3 bits (1318), Expect = 2.500e-141
Identity = 303/740 (40.95%), Postives = 392/740 (52.97%), Query Frame = 0
Query:    1 MEISYQYSKSRASFGHDVRQTLQDAPTSVLLAMPSLPPISSXXXXXXXXXXXXXXPCSVSVSTIPQMSAHTVNTERCVLKSTSMRHVEGGWPKDVDPTEQADVTRFRKKAEKDDEYKAALKVLGPLVSRCMKQNGTVDIYEEYFVGGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPIMSGMAGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEPLLAKGLAVFRDPSPVKRPAIALNWHPEGQGKLAVAYCGLGFQDPRFTSA-TSKSSYIWDIHSPNRPELELCPPSPLTSLRFNPKSPDTLLGGCQNGLVCFFDLRRQGGGVAGREGGREGVVGEASFLECSHHDPVRDVFWISSKTGHQCVSISTDGRMLWWDTRRLAEPTDDLPLSLPSLGPS-PCGATALDYSLEGGPTKYLIGTEQGLILSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCSGLQVSDPYFLHKHHGAILSLQRNPAHPKFYLTIGDWRAALWTEDLRSPIFTTPFLSSPLMAGCWSPTRPGVFFVARKDGMVEGWDLLSRQGERAFAHKVGDTALTSLAIQGPSSSTSAPCNSLPEEGKEGGSGRLMAVGDEGGTVALLELCAGLSDYQAGEKAAVGAMLDRAMRAEKYLEVKEREGRRAKTAVAEEGGREGGRAGEKESVAGREEKMEELLRKVDADFLSMIKDAEDDEA 739
            ME++Y Y+K R+ FG  VR   +D  T +L ++                      P   ++ T P MS H  NTER V+K++S+RH+EGGWPKDVD  E  DV R+RKKAEKD++YK  +K LGP++SRCM+QN T+DIYEEYF                                                                                     EP  AKGLAVFRDP+ +KR A +++WHPEG  K+AV+Y  L FQD RFTSA     SYIWDI +PN P+ EL PPSPL  LRFNPKS DTL+GG  NGLV F+DLRRQGGG             E+S +E SHHDP+ DVFWISSKTG+QC S+STDG+MLWWDTRRL EP D L L+  + G     G ++++Y+ E  PTKYL+GTEQG++LS                                                       +G+ V D     KHHG I S+QRNP H KF++T+GDW A +W EDL++PI TT + S+ L +GCWSPTR GVF+V R DG+V+ WD   RQ E A++HKVGD AL+++++                     GSGRL+AVGD  GTV+LLE+C  L+  QA EK A+ +ML+R  + EK LE+++R+ RR                          +     LR VDA+FL+MIK+AEDDE+
Sbjct:    1 MEVAYLYTKVRSDFGKQVR--FEDPETRILFSVAPSDEFDK--------SFVLRNPSVATLDTSPHMSEHETNTERLVVKNSSIRHMEGGWPKDVDAAEPTDVNRYRKKAEKDEDYKTTMKNLGPIISRCMRQNNTIDIYEEYF----------------------------------------------------------------------------SHDDRDWSGEPPSAKGLAVFRDPNAMKRTATSIHWHPEGPTKIAVSYSILNFQDSRFTSARLPVQSYIWDIINPNTPDTELTPPSPLCCLRFNPKSTDTLVGGSYNGLVTFYDLRRQGGGSP----------LESSVIEKSHHDPIYDVFWISSKTGNQCASVSTDGQMLWWDTRRLGEPVDKLLLNSDTKGSGMVLGGSSMEYNKE-IPTKYLVGTEQGIVLSLNLRNRKQN----------------------------------------------NGITVYDA-GAGKHHGPIYSIQRNPTHNKFFMTVGDWTARIWMEDLKTPIMTTKYHSAYLTSGCWSPTRAGVFYVTRMDGVVDIWDYFYRQNEVAYSHKVGDAALSAISV-------------------SNGSGRLVAVGDANGTVSLLEVCESLAAPQANEKNAIASMLERETKQEKNLELRDRDLRRXXXXXXXXXXXXXXXXXXXXXXXXXXQ-----LRTVDANFLNMIKEAEDDES 572          
BLAST of NO28G01810 vs. NCBI_GenBank
Match: XP_009033999.1 (hypothetical protein AURANDRAFT_21065 [Aureococcus anophagefferens] >EGB11654.1 hypothetical protein AURANDRAFT_21065 [Aureococcus anophagefferens])

HSP 1 Score: 510.4 bits (1313), Expect = 9.600e-141
Identity = 302/740 (40.81%), Postives = 391/740 (52.84%), Query Frame = 0
Query:    1 MEISYQYSKSRASFGHDVRQTLQDAPTSVLLAMPSLPPISSXXXXXXXXXXXXXXPCSVSVSTIPQMSAHTVNTERCVLKSTSMRHVEGGWPKDVDPTEQADVTRFRKKAEKDDEYKAALKVLGPLVSRCMKQNGTVDIYEEYFVGGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPIMSGMAGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEPLLAKGLAVFRDPSPVKRPAIALNWHPEGQGKLAVAYCGLGFQDPRFTSA-TSKSSYIWDIHSPNRPELELCPPSPLTSLRFNPKSPDTLLGGCQNGLVCFFDLRRQGGGVAGREGGREGVVGEASFLECSHHDPVRDVFWISSKTGHQCVSISTDGRMLWWDTRRLAEPTDDLPLSLPSLGPS-PCGATALDYSLEGGPTKYLIGTEQGLILSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCSGLQVSDPYFLHKHHGAILSLQRNPAHPKFYLTIGDWRAALWTEDLRSPIFTTPFLSSPLMAGCWSPTRPGVFFVARKDGMVEGWDLLSRQGERAFAHKVGDTALTSLAIQGPSSSTSAPCNSLPEEGKEGGSGRLMAVGDEGGTVALLELCAGLSDYQAGEKAAVGAMLDRAMRAEKYLEVKEREGRRAKTAVAEEGGREGGRAGEKESVAGREEKMEELLRKVDADFLSMIKDAEDDEA 739
            ME++Y Y+K R+ FG  VR   +D  T +L ++                      P   ++ T P MS H  NTER V+K++S+RH+EGGWPKDVD  E  DV R+RKKAEKD++YK  +K LGP++SRCM+QN T+DIYEEYF                                                                                     EP  AKGLAVFRDP+ +KR A +++WHPEG  K+AV+Y  L FQD RF SA     SYIWDI +PN P+ EL PPSPL  LRFNPKS DTL+GG  NGLV F+DLRRQGGG             E+S +E SHHDP+ DVFWISSKTG+QC S+STDG+MLWWDTRRL EP D L L+  + G     G ++++Y+ E  PTKYL+GTEQG++LS                                                       +G+ V D     KHHG I S+QRNP H KF++T+GDW A +W EDL++PI TT + S+ L +GCWSPTR GVF+V R DG+V+ WD   RQ E A++HKVGD AL+++++                     GSGRL+AVGD  GTV+LLE+C  L+  QA EK A+ +ML+R  + EK LE+++R+ RR                          +     LR VDA+FL+MIK+AEDDE+
Sbjct:    1 MEVAYLYTKVRSDFGKQVR--FEDPETRILFSVAPSDEFDK--------SFVLRNPSVATLDTSPHMSEHETNTERLVVKNSSIRHMEGGWPKDVDAAEPTDVNRYRKKAEKDEDYKTTMKNLGPIISRCMRQNNTIDIYEEYF----------------------------------------------------------------------------SRDDRDWSGEPPSAKGLAVFRDPNAMKRTATSIHWHPEGPTKIAVSYSILNFQDSRFASARLPVQSYIWDIINPNTPDTELTPPSPLCCLRFNPKSTDTLVGGSYNGLVTFYDLRRQGGGSP----------LESSVIEKSHHDPIYDVFWISSKTGNQCASVSTDGQMLWWDTRRLGEPVDKLLLNSDAKGSGMVLGGSSMEYNKE-IPTKYLVGTEQGIVLSLNLRNRKQN----------------------------------------------NGITVYDA-GAGKHHGPIYSIQRNPTHNKFFMTVGDWTARIWMEDLKTPIMTTKYHSAYLTSGCWSPTRAGVFYVTRMDGVVDIWDYFYRQNEVAYSHKVGDAALSAISV-------------------SNGSGRLVAVGDANGTVSLLEVCESLAAPQANEKNAIASMLERETKQEKNLELRDRDLRRXXXXXXXXXXXXXXXXXXXXXXXXXXQ-----LRTVDANFLNMIKEAEDDES 572          
BLAST of NO28G01810 vs. NCBI_GenBank
Match: XP_024580846.1 (dynein-like protein [Plasmopara halstedii] >CEG44477.1 dynein-like protein [Plasmopara halstedii])

HSP 1 Score: 509.6 bits (1311), Expect = 1.600e-140
Identity = 308/738 (41.73%), Postives = 389/738 (52.71%), Query Frame = 0
Query:    1 MEISYQYSKSRASFGHDVRQTLQDAPTSVLLAMPSLPPISSXXXXXXXXXXXXXXPCSVSVSTIPQMSAHTVNTERCVLKSTSMRHVEGGWPKDVDPTEQADVTRFRKKAEKDDEYKAALKVLGPLVSRCMKQNGTVDIYEEYFVGGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPIMSGMAGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEPLLAKGLAVFRDPSPVKRPAIALNWHPEGQGKLAVAYCGLGFQDPRFTSA-TSKSSYIWDIHSPNRPELELCPPSPLTSLRFNPKSPDTLLGGCQNGLVCFFDLRRQGGGVAGREGGREGVVGEASFLECSHHDPVRDVFWISSKTGHQCVSISTDGRMLWWDTRRLAEPTDDLPLSLPSLGPSPCGATALDYSLEGGPTKYLIGTEQGLILSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCSGLQVSDPYFLHKHHGAILSLQRNPAHPKFYLTIGDWRAALWTEDLRSPIFTTPFLSSPLMAGCWSPTRPGVFFVARKDGMVEGWDLLSRQGERAFAHKVGDTALTSLAIQGPSSSTSAPCNSLPEEGKEGGSGRLMAVGDEGGTVALLELCAGLSDYQAGEKAAVGAMLDRAMRAEKYLEVKEREGRRAKTAVAEEGGREGGRAGEKESVAGREEKMEELLRKVDADFLSMIKDAEDDE 738
            ME++Y Y+K R SFG       +D    VL  +P    + +              P    + T+P MS H VNTER V K +SMRHVEGGWPKDVDP EQ+DV RFRKKAEKDD+YK A+K LGP+V R +KQN T++IYE+YF                                               G A                                  +E   AKGLAVFRDP PVKR    ++WHPE   K+A  YC L FQDP+F SA    +SYIWD+ +PN PE  L P SPL  +R+NPKS D L+GG  NG+V FFDLR+ G   A           E+S +E SHHDPV D+FW+SSKTG+QC S+STDG MLWWD R LA+PT  L L+         G ++L+Y+ E GPTKYL+GTEQG ++S                                                       +G+ + D     KHHG + ++QRNP H KF+LTIGDW A LW EDL++PI +T +  S + AGCWSPTR GVFFV R DG+V+ WD   RQ E A++HKVGD AL+S+ +QG +                G  G+L+AVGD  G + LLEL  GL+  Q  EKAA+  M +R  + EK LE KE+E RR K A+  EG  +  R G       +++KMEELLR VDA+FL MIK+AED E
Sbjct:    1 MELAYLYTKKRESFGRYC--DFRDVDAQVLECIPDTDSLEN--------EYVRRRPMVTRLDTMPHMSEHEVNTERLVTKHSSMRHVEGGWPKDVDPAEQSDVQRFRKKAEKDDDYKQAVKALGPIVERALKQNNTINIYEDYFAD--------------------------------------------MGEAA--------------------------------TTEQPSAKGLAVFRDPEPVKRTISQIDWHPESPQKMAACYCILNFQDPKFASARLPANSYIWDVLNPNIPETTLKPASPLVCMRYNPKSVDQLVGGLYNGIVSFFDLRKSGSTPA-----------ESSTIEHSHHDPVYDIFWVSSKTGNQCCSVSTDGWMLWWDIRHLAQPTQKLLLT--DKDGVAFGGSSLEYNTEAGPTKYLVGTEQGAVVSVNMRNVKQN----------------------------------------------NGITLYDT-GAGKHHGPVSAIQRNPTHNKFFLTIGDWTARLWCEDLKTPIMSTIYHDSYVTAGCWSPTRAGVFFVTRMDGVVDIWDFFYRQNEVAYSHKVGDVALSSITVQGYA----------------GYGGKLVAVGDCNGMITLLELSDGLAVSQLNEKAAMNGMFEREAKREKNLEAKEKELRR-KMALMTEGSTD-DRGGNY-----KDDKMEELLRTVDANFLGMIKEAEDSE 569          
The following BLAST results are available for this feature:
BLAST of NO28G01810 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005855875.11.500e-18155.77dynein intermediate chain 2, axonemal [Nannochloro... [more]
CBN74276.12.300e-15042.84putative, Dynein intermediate chain [Ectocarpus si... [more]
GAY04376.13.900e-14241.58Hypothetical protein PINS_012185 [Pythium insidios... [more]
ETI52142.18.700e-14241.33hypothetical protein F443_04661 [Phytophthora para... [more]
ETK92030.18.700e-14241.33hypothetical protein L915_04546 [Phytophthora para... [more]
ETM51758.18.700e-14241.33hypothetical protein L914_04480 [Phytophthora para... [more]
XP_008901961.18.700e-14241.33hypothetical protein PPTG_08960 [Phytophthora para... [more]
XP_009042544.12.500e-14140.95hypothetical protein AURANDRAFT_34917 [Aureococcus... [more]
XP_009033999.19.600e-14140.81hypothetical protein AURANDRAFT_21065 [Aureococcus... [more]
XP_024580846.11.600e-14041.73dynein-like protein [Plasmopara halstedii] >CEG444... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR087ncniR087Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR101ngnoR101Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO28G01810.1NO28G01810.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|547847gene_11124Nannochloropsis oceanica (N. oceanica CCMP1779)gene
DICgene9779Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO28G01810.1NO28G01810.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO28G01810 ID=NO28G01810|Name=NO28G01810|organism=Nannochloropsis oceanica|type=gene|length=2603bp
AACAGATCTTCACGAACATGGAAATTTCTTATCAATATTCCAAATCGCGG
GCTTCCTTTGGGCATGATGTGCGGCAAACCCTCCAAGACGCGCCCACAAG
CGTTCTCCTCGCCATGCCCTCCCTCCCACCCATCTCCTCCACCTCTACGT
CCACATCTACCTCCACCATCACACGCCGCAACCCCTGTAGCGTCTCTGTG
AGCACCATCCCTCAAATGTCTGCTCACACTGTCAACACGGAGCGCTGCGT
ACTGAAAAGCACGAGCATGCGGCACGTTGAAGGCGGGTGGCCTAAAGACG
TCGACCCCACCGAGCAAGCGGATGTGACGCGCTTTCGGAAAAAAGCGGAA
AAAGATGATGAGTATAAGGCGGCACTTAAGGTCCTTGGGCCGTTGGTGAG
TCGGTGTATGAAGCAGAATGGCACGGTTGACATATATGAGGAGTACTTTG
TGGGAGGGAGGGAGGGAGGGAGAGAGGGAGGGGAGAGCGGCGGGGGGGAA
GGGATTGGGGAGACTGGAGGCTTTGGAACCGGGTATGGAGGAAACGCTTA
CGGAGGATTGGAAGGGGGCGGAAAGTCACCAATTATGAGCGGGATGGCTG
GGAAGGGGGGGGGGATCACAATCACCTCTGCCAGCAGTGGCAGTAGCAGT
GGCAGCTACAATCACAGCAATCACGCCCATCATCATCAGCAACACCACGC
CTCGGAGCCTTTGCTCGCGAAGGGCCTGGCTGTATTTCGCGACCCTTCAC
CGGTGAAGCGGCCGGCGATCGCCCTTAACTGGCACCCTGAGGGACAGGGC
AAGCTGGCTGTGGCTTATTGCGGGCTGGGCTTCCAGGACCCGCGGTTTAC
GAGgtgagggagagagggaaggagaaaagggagacagcagcgtacataga
tctgaaatatgatattccaagtataagacattattcaccctcctcatgca
cgtgtaatctattcccgccctccctccctccccctggcagCGCAACCTCG
AAGTCGTCCTACATCTGGGACATTCACTCCCCCAACCGGCCCGAGCTGGA
ACTGTGCCCACCCTCGCCCCTGACCTCTCTCCGATTCAATCCCAAGTCTC
CGGACACTTTGCTAGGCGGGTGCCAGAACGGCCTCGTCTGCTTCTTTGAC
CTGAGGAGGCAAGGTGGAGGGGTGGCTGGGAGGGAGGGCGGGAGGGAGGG
CGTGGTGGGCGAGGCGTCGTTTCTAGAGTGTTCGCATCACGACCCAGTCC
GGGACGTCTTTTGGATCAGCAGCAAAACAGGCCATCAATGCGTATCCATC
TCAACTGATGGACGAATGCTCTGGTGGGACACCCGCCGCCTCGCCGAGCC
AACAGACGACCTCCCGCTCTCCCTGCCTTCTCTCGGTCCCTCCCCCTGCG
GAGCCACGGCTCTCGACTACTCCCTCGAGGGAGGCCCGACCAAGTACTTG
ATTGGAACAGAGCAAGGCCTCATCCTTTCGCTCAACCTCCGCAACCGCCG
CCAACAGCAACAGCAGCAGCAGCAACAACAGCAACACCGAACATTAGCTG
CCACGTCACACACACACCCCCTCTCCTCTTCGTCCTCCTCCTCCACCTCC
TTCACCGCCCCTTTTTCTTCCAGCAGCATCAGCAGTACCAACTGTAGTGG
TCTTCAAGTCTCCGACCCATATTTCCTGCATAAACATCACGGCGCCATCC
TCTCCCTGCAGCGCAATCCCGCTCACCCTAAATTCTACCTCACTATCGGC
GACTGGCGCGCTGCTCTTTGGACAGAAGACCTGCGCTCCCCCATTTTCAC
CACGCCATTCCTCTCCTCGCCGCTTATGGCTGGCTGCTGGTCACCCACGC
GGCCCGGTGTATTTTTTGTGGCGCGCAAGGACGGAATGGTGGAGGGATGG
GACTTGCTATCAAGACAAGGCGAGAGGGCATTCGCACACAAGGTGGGAGA
CACAGCGCTCACCTCCCTCGCGATTCAGGGACCCTCATCCTCAACTTCTG
CCCCTTGCAACTCCTTGCCCGAGGAAGGGAAGGAGGGAGGGTCAGGGCGC
CTTATGGCGGTCGGGGATGAGGGAGGGACCGTGGCGCTGCTGGAGCTCTG
TGCGGGGCTGAGTGACTACCAGGCAGGGGAGAAGGCAGCGGTAGGCGCAA
TGCTAGATCGAGCAATGAGAGCAGAGAAGTACCTGGAGGTCAAGGAGAGG
GAAGGGAGGAGGGCCAAGACAGCGGTGGCGGAAGAGGGAGGGAGGGAGGG
CGGGAGGGCGGGGGAAAAAGAGAGTGTGGCGGGCAGGGAGGAGAAGATGG
AGGAGTTGTTGCGAAAGGTGGATGCGGATTTCCTGTCGATGATCAAGGAC
GCGGAGGATGACGAGGCGGGGGGAAGACGGGAGACGGAAAGGGAGTATTA
AACTGAGTAAGGGGTGAAAGCAGGTGGAAAGGAGGGAGCGTAAGAGAGAC
GTATGTAAAGGTAAGAGCACGACGACAATCTTTTTCATAAGCAGGCAACT
GATAGGTGTAGAGGATGAATGCAGGAAAGGACACGCAGAAGAAACACAGA
GGACGGCACAAAAGAAATAATGCCGGCGTATCCAGGGAGTCCCTCGCGTC
CTA
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protein sequence of NO28G01810.1

>NO28G01810.1-protein ID=NO28G01810.1-protein|Name=NO28G01810.1|organism=Nannochloropsis oceanica|type=polypeptide|length=749bp
MEISYQYSKSRASFGHDVRQTLQDAPTSVLLAMPSLPPISSTSTSTSTST
ITRRNPCSVSVSTIPQMSAHTVNTERCVLKSTSMRHVEGGWPKDVDPTEQ
ADVTRFRKKAEKDDEYKAALKVLGPLVSRCMKQNGTVDIYEEYFVGGREG
GREGGESGGGEGIGETGGFGTGYGGNAYGGLEGGGKSPIMSGMAGKGGGI
TITSASSGSSSGSYNHSNHAHHHQQHHASEPLLAKGLAVFRDPSPVKRPA
IALNWHPEGQGKLAVAYCGLGFQDPRFTSATSKSSYIWDIHSPNRPELEL
CPPSPLTSLRFNPKSPDTLLGGCQNGLVCFFDLRRQGGGVAGREGGREGV
VGEASFLECSHHDPVRDVFWISSKTGHQCVSISTDGRMLWWDTRRLAEPT
DDLPLSLPSLGPSPCGATALDYSLEGGPTKYLIGTEQGLILSLNLRNRRQ
QQQQQQQQQQHRTLAATSHTHPLSSSSSSSTSFTAPFSSSSISSTNCSGL
QVSDPYFLHKHHGAILSLQRNPAHPKFYLTIGDWRAALWTEDLRSPIFTT
PFLSSPLMAGCWSPTRPGVFFVARKDGMVEGWDLLSRQGERAFAHKVGDT
ALTSLAIQGPSSSTSAPCNSLPEEGKEGGSGRLMAVGDEGGTVALLELCA
GLSDYQAGEKAAVGAMLDRAMRAEKYLEVKEREGRRAKTAVAEEGGREGG
RAGEKESVAGREEKMEELLRKVDADFLSMIKDAEDDEAGGRRETEREY*
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Synonyms
Publications