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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr28 | genome | chr28:581596..584198 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO28G01810.1 vs.
Match: XP_005855875.1 (dynein intermediate chain 2, axonemal [Nannochloropsis gaditana CCMP526]; EKU20484.1 dynein intermediate chain 2, axonemal [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 774.6 bits (1999), Expect = 2.700e-220 Identity = 430/681 (63.14%), Postives = 504/681 (74.01%), Query Frame = 0
Query: 84 MRHVEGGWPKDVDPTEQADVTRFRKKAEKDDEYKAALKVLGPLVSRCMKQNGTVDIYEEYFVGG---REGGREGGESGGGEGIGETGGFGTGYGGNAYGGLEGGGKSPIMSGMAGKGGGITITSASSGSSSGSYNHSNHAHHHQQHHASEPLLAKGLAVFRDPSPVKRPAIALNWHPEGQGKLAVAYCGLGFQDPRFTSATSKSSYIWDIHSPNRPELELCPPSPLTSLRFNPKSPDTLLGGCQNGLVCFFDLRRQGGGVAGREGGREGVVGEASFLECSHHDPVRDVFWISSKTGHQCVSISTDGRMLWWDTRRLAEPTDDLPLSL---PSLGPSPCGATALDYSLEGGPTKYLIGTEQGLILSLNLRNRRQQQQQQQQQQQHRTLAATSHTHPLSSSSSSSTSFTAPF---SSSSISSTNCSGLQVSDPYFLHKHHGAILSLQRNPAHPKFYLTIGDWRAALWTEDLRSPIFTTPFLSSPLMAGCWSPTRPGVFFVARKDGMVEGWDLLSRQGERAFAHKVGDTALTSLAIQGPSSSTSAP--------CNSLP-EEGKEGGSGRLMAVGDEGGTVALLELCAGLSDYQAGEKAAVGAMLDRAMRAEKYLEVKEREGRRAKTAVAEEGGREGGRAGEKESVAG--REEKMEELLRKVDADFLSMIKDAED-DEAGGRRE 744
MRHVEGGWPKDVD TEQADV RFRKKAEKDDE K ALK+LGP+V+RCMKQN T+DIY+EYFVG +E GR+ EG+G G ++ GG E G S G+ KGGG T T+ G+Y H N + ++Q+H ASE KGLAVFRDPS +KRP +LNWHP+GQGKLAVAYCGLGFQDPR++SA+ +SS++WDI+SPNRP++EL PPSPLTSLRFNPK PDTLLGGCQNGLVC FDLR+QG G AG G +GVVGEAS LE SHHDPVRDVFWISSKTGHQCVSISTDG+MLWWDTR L +PTD LPL L PSL S GATALDYSLE GPTKYLIGTEQGL+LSLNLRNRR QQQ P SS S S + +P +S S +S++ SGL SDP LHKH+G ILSL RNP HPKFY ++GDWRA+ W +D+RSP+F+TPFL P+ AGCWSPTRP +FF+AR+DGM+EGWD +QGE+ F+HKVGDT +T+LAIQG S+S+ P S+P G E G GRLMAVGDEGGTVALLELC GLS+ QAGEKAA+GA+L+R MR EK +E +ERE RRA+ A EEGGREGG+ + V REEKMEELLR+VDADFLSMIK+AE+ EAG +E
Sbjct: 1 MRHVEGGWPKDVDHTEQADVARFRKKAEKDDECKVALKLLGPVVARCMKQNATIDIYQEYFVGECREKESGRDR------EGVGADY---VDQGSSSVGGGEISGPS----GVFLKGGGGTNTTVG-----GAYLHGNPSRYYQEH-ASESFTGKGLAVFRDPSSLKRPIASLNWHPDGQGKLAVAYCGLGFQDPRWSSASPRSSFVWDINSPNRPDVELSPPSPLTSLRFNPKVPDTLLGGCQNGLVCVFDLRKQGSGGAGGSGAGQGVVGEASLLEHSHHDPVRDVFWISSKTGHQCVSISTDGQMLWWDTRHLTQPTDALPLLLPLGPSLPSSLLGATALDYSLEAGPTKYLIGTEQGLVLSLNLRNRRHQQQ------------------PPSSPSLVSPTLLSPQALPTSPSAASSSSSGLLASDPSPLHKHYGPILSLHRNPTHPKFYASVGDWRASFWADDVRSPLFSTPFLPMPITAGCWSPTRPSLFFLARQDGMLEGWDFFEKQGEKVFSHKVGDTPITALAIQGGSTSSLPPSATSSVLRAASMPWTGGNEAGGGRLMAVGDEGGTVALLELCRGLSECQAGEKAAMGALLEREMRVEKNMEARERENRRARAAGGEEGGREGGKTMGQGGVRDEEREEKMEELLREVDADFLSMIKEAEETGEAGSDKE 644
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO28G01810.1 ID=NO28G01810.1|Name=NO28G01810.1|organism=Nannochloropsis oceanica|type=mRNA|length=2466bp
AACAGATCTTCACGAACATGGAAATTTCTTATCAATATTCCAAATCGCGG
GCTTCCTTTGGGCATGATGTGCGGCAAACCCTCCAAGACGCGCCCACAAG
CGTTCTCCTCGCCATGCCCTCCCTCCCACCCATCTCCTCCACCTCTACGT
CCACATCTACCTCCACCATCACACGCCGCAACCCCTGTAGCGTCTCTGTG
AGCACCATCCCTCAAATGTCTGCTCACACTGTCAACACGGAGCGCTGCGT
ACTGAAAAGCACGAGCATGCGGCACGTTGAAGGCGGGTGGCCTAAAGACG
TCGACCCCACCGAGCAAGCGGATGTGACGCGCTTTCGGAAAAAAGCGGAA
AAAGATGATGAGTATAAGGCGGCACTTAAGGTCCTTGGGCCGTTGGTGAG
TCGGTGTATGAAGCAGAATGGCACGGTTGACATATATGAGGAGTACTTTG
TGGGAGGGAGGGAGGGAGGGAGAGAGGGAGGGGAGAGCGGCGGGGGGGAA
GGGATTGGGGAGACTGGAGGCTTTGGAACCGGGTATGGAGGAAACGCTTA
CGGAGGATTGGAAGGGGGCGGAAAGTCACCAATTATGAGCGGGATGGCTG
GGAAGGGGGGGGGGATCACAATCACCTCTGCCAGCAGTGGCAGTAGCAGT
GGCAGCTACAATCACAGCAATCACGCCCATCATCATCAGCAACACCACGC
CTCGGAGCCTTTGCTCGCGAAGGGCCTGGCTGTATTTCGCGACCCTTCAC
CGGTGAAGCGGCCGGCGATCGCCCTTAACTGGCACCCTGAGGGACAGGGC
AAGCTGGCTGTGGCTTATTGCGGGCTGGGCTTCCAGGACCCGCGGTTTAC
GAGCGCAACCTCGAAGTCGTCCTACATCTGGGACATTCACTCCCCCAACC
GGCCCGAGCTGGAACTGTGCCCACCCTCGCCCCTGACCTCTCTCCGATTC
AATCCCAAGTCTCCGGACACTTTGCTAGGCGGGTGCCAGAACGGCCTCGT
CTGCTTCTTTGACCTGAGGAGGCAAGGTGGAGGGGTGGCTGGGAGGGAGG
GCGGGAGGGAGGGCGTGGTGGGCGAGGCGTCGTTTCTAGAGTGTTCGCAT
CACGACCCAGTCCGGGACGTCTTTTGGATCAGCAGCAAAACAGGCCATCA
ATGCGTATCCATCTCAACTGATGGACGAATGCTCTGGTGGGACACCCGCC
GCCTCGCCGAGCCAACAGACGACCTCCCGCTCTCCCTGCCTTCTCTCGGT
CCCTCCCCCTGCGGAGCCACGGCTCTCGACTACTCCCTCGAGGGAGGCCC
GACCAAGTACTTGATTGGAACAGAGCAAGGCCTCATCCTTTCGCTCAACC
TCCGCAACCGCCGCCAACAGCAACAGCAGCAGCAGCAACAACAGCAACAC
CGAACATTAGCTGCCACGTCACACACACACCCCCTCTCCTCTTCGTCCTC
CTCCTCCACCTCCTTCACCGCCCCTTTTTCTTCCAGCAGCATCAGCAGTA
CCAACTGTAGTGGTCTTCAAGTCTCCGACCCATATTTCCTGCATAAACAT
CACGGCGCCATCCTCTCCCTGCAGCGCAATCCCGCTCACCCTAAATTCTA
CCTCACTATCGGCGACTGGCGCGCTGCTCTTTGGACAGAAGACCTGCGCT
CCCCCATTTTCACCACGCCATTCCTCTCCTCGCCGCTTATGGCTGGCTGC
TGGTCACCCACGCGGCCCGGTGTATTTTTTGTGGCGCGCAAGGACGGAAT
GGTGGAGGGATGGGACTTGCTATCAAGACAAGGCGAGAGGGCATTCGCAC
ACAAGGTGGGAGACACAGCGCTCACCTCCCTCGCGATTCAGGGACCCTCA
TCCTCAACTTCTGCCCCTTGCAACTCCTTGCCCGAGGAAGGGAAGGAGGG
AGGGTCAGGGCGCCTTATGGCGGTCGGGGATGAGGGAGGGACCGTGGCGC
TGCTGGAGCTCTGTGCGGGGCTGAGTGACTACCAGGCAGGGGAGAAGGCA
GCGGTAGGCGCAATGCTAGATCGAGCAATGAGAGCAGAGAAGTACCTGGA
GGTCAAGGAGAGGGAAGGGAGGAGGGCCAAGACAGCGGTGGCGGAAGAGG
GAGGGAGGGAGGGCGGGAGGGCGGGGGAAAAAGAGAGTGTGGCGGGCAGG
GAGGAGAAGATGGAGGAGTTGTTGCGAAAGGTGGATGCGGATTTCCTGTC
GATGATCAAGGACGCGGAGGATGACGAGGCGGGGGGAAGACGGGAGACGG
AAAGGGAGTATTAAACTGAGTAAGGGGTGAAAGCAGGTGGAAAGGAGGGA
GCGTAAGAGAGACGTATGTAAAGGTAAGAGCACGACGACAATCTTTTTCA
TAAGCAGGCAACTGATAGGTGTAGAGGATGAATGCAGGAAAGGACACGCA
GAAGAAACACAGAGGACGGCACAAAAGAAATAATGCCGGCGTATCCAGGG
AGTCCCTCGCGTCCTA back to topprotein sequence of NO28G01810.1 >NO28G01810.1-protein ID=NO28G01810.1-protein|Name=NO28G01810.1|organism=Nannochloropsis oceanica|type=polypeptide|length=749bp
MEISYQYSKSRASFGHDVRQTLQDAPTSVLLAMPSLPPISSTSTSTSTST
ITRRNPCSVSVSTIPQMSAHTVNTERCVLKSTSMRHVEGGWPKDVDPTEQ
ADVTRFRKKAEKDDEYKAALKVLGPLVSRCMKQNGTVDIYEEYFVGGREG
GREGGESGGGEGIGETGGFGTGYGGNAYGGLEGGGKSPIMSGMAGKGGGI
TITSASSGSSSGSYNHSNHAHHHQQHHASEPLLAKGLAVFRDPSPVKRPA
IALNWHPEGQGKLAVAYCGLGFQDPRFTSATSKSSYIWDIHSPNRPELEL
CPPSPLTSLRFNPKSPDTLLGGCQNGLVCFFDLRRQGGGVAGREGGREGV
VGEASFLECSHHDPVRDVFWISSKTGHQCVSISTDGRMLWWDTRRLAEPT
DDLPLSLPSLGPSPCGATALDYSLEGGPTKYLIGTEQGLILSLNLRNRRQ
QQQQQQQQQQHRTLAATSHTHPLSSSSSSSTSFTAPFSSSSISSTNCSGL
QVSDPYFLHKHHGAILSLQRNPAHPKFYLTIGDWRAALWTEDLRSPIFTT
PFLSSPLMAGCWSPTRPGVFFVARKDGMVEGWDLLSRQGERAFAHKVGDT
ALTSLAIQGPSSSTSAPCNSLPEEGKEGGSGRLMAVGDEGGTVALLELCA
GLSDYQAGEKAAVGAMLDRAMRAEKYLEVKEREGRRAKTAVAEEGGREGG
RAGEKESVAGREEKMEELLRKVDADFLSMIKDAEDDEAGGRRETEREY* back to topmRNA from alignment at chr28:581596..584198- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO28G01810.1 ID=NO28G01810.1|Name=NO28G01810.1|organism=Nannochloropsis oceanica|type=mRNA|length=2603bp|location=Sequence derived from alignment at chr28:581596..584198- (Nannochloropsis oceanica)
AACAGATCTTCACGAACATGGAAATTTCTTATCAATATTCCAAATCGCGG
GCTTCCTTTGGGCATGATGTGCGGCAAACCCTCCAAGACGCGCCCACAAG
CGTTCTCCTCGCCATGCCCTCCCTCCCACCCATCTCCTCCACCTCTACGT
CCACATCTACCTCCACCATCACACGCCGCAACCCCTGTAGCGTCTCTGTG
AGCACCATCCCTCAAATGTCTGCTCACACTGTCAACACGGAGCGCTGCGT
ACTGAAAAGCACGAGCATGCGGCACGTTGAAGGCGGGTGGCCTAAAGACG
TCGACCCCACCGAGCAAGCGGATGTGACGCGCTTTCGGAAAAAAGCGGAA
AAAGATGATGAGTATAAGGCGGCACTTAAGGTCCTTGGGCCGTTGGTGAG
TCGGTGTATGAAGCAGAATGGCACGGTTGACATATATGAGGAGTACTTTG
TGGGAGGGAGGGAGGGAGGGAGAGAGGGAGGGGAGAGCGGCGGGGGGGAA
GGGATTGGGGAGACTGGAGGCTTTGGAACCGGGTATGGAGGAAACGCTTA
CGGAGGATTGGAAGGGGGCGGAAAGTCACCAATTATGAGCGGGATGGCTG
GGAAGGGGGGGGGGATCACAATCACCTCTGCCAGCAGTGGCAGTAGCAGT
GGCAGCTACAATCACAGCAATCACGCCCATCATCATCAGCAACACCACGC
CTCGGAGCCTTTGCTCGCGAAGGGCCTGGCTGTATTTCGCGACCCTTCAC
CGGTGAAGCGGCCGGCGATCGCCCTTAACTGGCACCCTGAGGGACAGGGC
AAGCTGGCTGTGGCTTATTGCGGGCTGGGCTTCCAGGACCCGCGGTTTAC
GAGGTGAGGGAGAGAGGGAAGGAGAAAAGGGAGACAGCAGCGTACATAGA
TCTGAAATATGATATTCCAAGTATAAGACATTATTCACCCTCCTCATGCA
CGTGTAATCTATTCCCGCCCTCCCTCCCTCCCCCTGGCAGCGCAACCTCG
AAGTCGTCCTACATCTGGGACATTCACTCCCCCAACCGGCCCGAGCTGGA
ACTGTGCCCACCCTCGCCCCTGACCTCTCTCCGATTCAATCCCAAGTCTC
CGGACACTTTGCTAGGCGGGTGCCAGAACGGCCTCGTCTGCTTCTTTGAC
CTGAGGAGGCAAGGTGGAGGGGTGGCTGGGAGGGAGGGCGGGAGGGAGGG
CGTGGTGGGCGAGGCGTCGTTTCTAGAGTGTTCGCATCACGACCCAGTCC
GGGACGTCTTTTGGATCAGCAGCAAAACAGGCCATCAATGCGTATCCATC
TCAACTGATGGACGAATGCTCTGGTGGGACACCCGCCGCCTCGCCGAGCC
AACAGACGACCTCCCGCTCTCCCTGCCTTCTCTCGGTCCCTCCCCCTGCG
GAGCCACGGCTCTCGACTACTCCCTCGAGGGAGGCCCGACCAAGTACTTG
ATTGGAACAGAGCAAGGCCTCATCCTTTCGCTCAACCTCCGCAACCGCCG
CCAACAGCAACAGCAGCAGCAGCAACAACAGCAACACCGAACATTAGCTG
CCACGTCACACACACACCCCCTCTCCTCTTCGTCCTCCTCCTCCACCTCC
TTCACCGCCCCTTTTTCTTCCAGCAGCATCAGCAGTACCAACTGTAGTGG
TCTTCAAGTCTCCGACCCATATTTCCTGCATAAACATCACGGCGCCATCC
TCTCCCTGCAGCGCAATCCCGCTCACCCTAAATTCTACCTCACTATCGGC
GACTGGCGCGCTGCTCTTTGGACAGAAGACCTGCGCTCCCCCATTTTCAC
CACGCCATTCCTCTCCTCGCCGCTTATGGCTGGCTGCTGGTCACCCACGC
GGCCCGGTGTATTTTTTGTGGCGCGCAAGGACGGAATGGTGGAGGGATGG
GACTTGCTATCAAGACAAGGCGAGAGGGCATTCGCACACAAGGTGGGAGA
CACAGCGCTCACCTCCCTCGCGATTCAGGGACCCTCATCCTCAACTTCTG
CCCCTTGCAACTCCTTGCCCGAGGAAGGGAAGGAGGGAGGGTCAGGGCGC
CTTATGGCGGTCGGGGATGAGGGAGGGACCGTGGCGCTGCTGGAGCTCTG
TGCGGGGCTGAGTGACTACCAGGCAGGGGAGAAGGCAGCGGTAGGCGCAA
TGCTAGATCGAGCAATGAGAGCAGAGAAGTACCTGGAGGTCAAGGAGAGG
GAAGGGAGGAGGGCCAAGACAGCGGTGGCGGAAGAGGGAGGGAGGGAGGG
CGGGAGGGCGGGGGAAAAAGAGAGTGTGGCGGGCAGGGAGGAGAAGATGG
AGGAGTTGTTGCGAAAGGTGGATGCGGATTTCCTGTCGATGATCAAGGAC
GCGGAGGATGACGAGGCGGGGGGAAGACGGGAGACGGAAAGGGAGTATTA
AACTGAGTAAGGGGTGAAAGCAGGTGGAAAGGAGGGAGCGTAAGAGAGAC
GTATGTAAAGGTAAGAGCACGACGACAATCTTTTTCATAAGCAGGCAACT
GATAGGTGTAGAGGATGAATGCAGGAAAGGACACGCAGAAGAAACACAGA
GGACGGCACAAAAGAAATAATGCCGGCGTATCCAGGGAGTCCCTCGCGTC
CTA back to topCoding sequence (CDS) from alignment at chr28:581596..584198- >NO28G01810.1 ID=NO28G01810.1|Name=NO28G01810.1|organism=Nannochloropsis oceanica|type=CDS|length=2247bp|location=Sequence derived from alignment at chr28:581596..584198- (Nannochloropsis oceanica)
ATGGAAATTTCTTATCAATATTCCAAATCGCGGGCTTCCTTTGGGCATGA
TGTGCGGCAAACCCTCCAAGACGCGCCCACAAGCGTTCTCCTCGCCATGC
CCTCCCTCCCACCCATCTCCTCCACCTCTACGTCCACATCTACCTCCACC
ATCACACGCCGCAACCCCTGTAGCGTCTCTGTGAGCACCATCCCTCAAAT
GTCTGCTCACACTGTCAACACGGAGCGCTGCGTACTGAAAAGCACGAGCA
TGCGGCACGTTGAAGGCGGGTGGCCTAAAGACGTCGACCCCACCGAGCAA
GCGGATGTGACGCGCTTTCGGAAAAAAGCGGAAAAAGATGATGAGTATAA
GGCGGCACTTAAGGTCCTTGGGCCGTTGGTGAGTCGGTGTATGAAGCAGA
ATGGCACGGTTGACATATATGAGGAGTACTTTGTGGGAGGGAGGGAGGGA
GGGAGAGAGGGAGGGGAGAGCGGCGGGGGGGAAGGGATTGGGGAGACTGG
AGGCTTTGGAACCGGGTATGGAGGAAACGCTTACGGAGGATTGGAAGGGG
GCGGAAAGTCACCAATTATGAGCGGGATGGCTGGGAAGGGGGGGGGGATC
ACAATCACCTCTGCCAGCAGTGGCAGTAGCAGTGGCAGCTACAATCACAG
CAATCACGCCCATCATCATCAGCAACACCACGCCTCGGAGCCTTTGCTCG
CGAAGGGCCTGGCTGTATTTCGCGACCCTTCACCGGTGAAGCGGCCGGCG
ATCGCCCTTAACTGGCACCCTGAGGGACAGGGCAAGCTGGCTGTGGCTTA
TTGCGGGCTGGGCTTCCAGGACCCGCGGTTTACGAGCGCAACCTCGAAGT
CGTCCTACATCTGGGACATTCACTCCCCCAACCGGCCCGAGCTGGAACTG
TGCCCACCCTCGCCCCTGACCTCTCTCCGATTCAATCCCAAGTCTCCGGA
CACTTTGCTAGGCGGGTGCCAGAACGGCCTCGTCTGCTTCTTTGACCTGA
GGAGGCAAGGTGGAGGGGTGGCTGGGAGGGAGGGCGGGAGGGAGGGCGTG
GTGGGCGAGGCGTCGTTTCTAGAGTGTTCGCATCACGACCCAGTCCGGGA
CGTCTTTTGGATCAGCAGCAAAACAGGCCATCAATGCGTATCCATCTCAA
CTGATGGACGAATGCTCTGGTGGGACACCCGCCGCCTCGCCGAGCCAACA
GACGACCTCCCGCTCTCCCTGCCTTCTCTCGGTCCCTCCCCCTGCGGAGC
CACGGCTCTCGACTACTCCCTCGAGGGAGGCCCGACCAAGTACTTGATTG
GAACAGAGCAAGGCCTCATCCTTTCGCTCAACCTCCGCAACCGCCGCCAA
CAGCAACAGCAGCAGCAGCAACAACAGCAACACCGAACATTAGCTGCCAC
GTCACACACACACCCCCTCTCCTCTTCGTCCTCCTCCTCCACCTCCTTCA
CCGCCCCTTTTTCTTCCAGCAGCATCAGCAGTACCAACTGTAGTGGTCTT
CAAGTCTCCGACCCATATTTCCTGCATAAACATCACGGCGCCATCCTCTC
CCTGCAGCGCAATCCCGCTCACCCTAAATTCTACCTCACTATCGGCGACT
GGCGCGCTGCTCTTTGGACAGAAGACCTGCGCTCCCCCATTTTCACCACG
CCATTCCTCTCCTCGCCGCTTATGGCTGGCTGCTGGTCACCCACGCGGCC
CGGTGTATTTTTTGTGGCGCGCAAGGACGGAATGGTGGAGGGATGGGACT
TGCTATCAAGACAAGGCGAGAGGGCATTCGCACACAAGGTGGGAGACACA
GCGCTCACCTCCCTCGCGATTCAGGGACCCTCATCCTCAACTTCTGCCCC
TTGCAACTCCTTGCCCGAGGAAGGGAAGGAGGGAGGGTCAGGGCGCCTTA
TGGCGGTCGGGGATGAGGGAGGGACCGTGGCGCTGCTGGAGCTCTGTGCG
GGGCTGAGTGACTACCAGGCAGGGGAGAAGGCAGCGGTAGGCGCAATGCT
AGATCGAGCAATGAGAGCAGAGAAGTACCTGGAGGTCAAGGAGAGGGAAG
GGAGGAGGGCCAAGACAGCGGTGGCGGAAGAGGGAGGGAGGGAGGGCGGG
AGGGCGGGGGAAAAAGAGAGTGTGGCGGGCAGGGAGGAGAAGATGGAGGA
GTTGTTGCGAAAGGTGGATGCGGATTTCCTGTCGATGATCAAGGACGCGG
AGGATGACGAGGCGGGGGGAAGACGGGAGACGGAAAGGGAGTATTAA back to top
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