NO28G01780, NO28G01780 (gene) Nannochloropsis oceanica

Overview
NameNO28G01780
Unique NameNO28G01780
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4661
Alignment locationchr28:565566..570226 -

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Properties
Property NameValue
DescriptionProteasome subunit alpha type
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:565566..570226 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005839proteasome core complex
GO:0019773proteasome core complex, alpha-subunit complex
GO:0005737cytoplasm
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0004298threonine-type endopeptidase activity
GO:0004175endopeptidase activity
GO:0016787hydrolase activity
Vocabulary: Biological Process
TermDefinition
GO:0051603proteolysis involved in cellular protein catabolic process
GO:0006511ubiquitin-dependent protein catabolic process
GO:0019538protein metabolic process
GO:0009987cellular process
GO:0009056catabolic process
Vocabulary: INTERPRO
TermDefinition
IPR029055Ntn_hydrolases_N
IPR036224GINS_bundle-like_dom_sf
IPR023332Proteasome_suA-type
IPR037555Proteasome_alpha_3
IPR031633SLD5_C
IPR001353Proteasome_sua/b
IPR000426Proteasome_asu_N
Homology
BLAST of NO28G01780 vs. NCBI_GenBank
Match: XP_005855873.1 (20S proteasome subunit alpha 7 [Nannochloropsis gaditana CCMP526] >EKU20482.1 20S proteasome subunit alpha 7 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 475.7 bits (1223), Expect = 1.700e-130
Identity = 234/261 (89.66%), Postives = 253/261 (96.93%), Query Frame = 0
Query:  224 MSSTGAGYDVSPTTFSPDGRLFQVEYASKAVENSGTAIGLKCKDGIVLAVENLLLSKLLVANSNRRTFGVGPHVSIAVAGLVSDGRQVVNRAREEAENYKDNYGSDIPPSVLADRLAQFVHFFTLNYSLRPFGASVLIAGYDAFMEALELHVIEPSGVAYKFFGAAVGKGRQGAKTEIEKLKLTETTCTDAIKEMAKILHKLHDESKDKPFELEMAWVTEANGFKAQTVPRDVVAAAEKWAKEAIEAEDMDESDDEEGGAA 485
            MSSTGAGYDVSPTTFSPDGRLFQVEYA KAVENSGTAIGLKCKDG++LAVENL+LSKLLV+NSNRRT+ VG H+SIAVAGLVSDGRQVVNRAREEAENYKDNYGSD+PP++LADRLAQFVH+FTLNYSLRPFGASVLIAG+DAF +++ELHVIEPSGVAYKFFGAA+GKGRQGAKTEIEKLKLTETTC DA+KEMAKILHKLHDESKDKPFELEMAWVT ANG+KAQ VPRD+VAAAEKWAKEAIEAEDMDESD+EEGG A
Sbjct:    1 MSSTGAGYDVSPTTFSPDGRLFQVEYAGKAVENSGTAIGLKCKDGVILAVENLMLSKLLVSNSNRRTYNVGSHISIAVAGLVSDGRQVVNRAREEAENYKDNYGSDMPPTILADRLAQFVHYFTLNYSLRPFGASVLIAGHDAFTDSIELHVIEPSGVAYKFFGAALGKGRQGAKTEIEKLKLTETTCDDAVKEMAKILHKLHDESKDKPFELEMAWVTAANGYKAQRVPRDIVAAAEKWAKEAIEAEDMDESDEEEGGTA 261          
BLAST of NO28G01780 vs. NCBI_GenBank
Match: EWM20632.1 (proteasome subunit alpha type 3 [Nannochloropsis gaditana])

HSP 1 Score: 427.9 bits (1099), Expect = 4.100e-116
Identity = 208/234 (88.89%), Postives = 227/234 (97.01%), Query Frame = 0
Query:  224 MSSTGAGYDVSPTTFSPDGRLFQVEYASKAVENSGTAIGLKCKDGIVLAVENLLLSKLLVANSNRRTFGVGPHVSIAVAGLVSDGRQVVNRAREEAENYKDNYGSDIPPSVLADRLAQFVHFFTLNYSLRPFGASVLIAGYDAFMEALELHVIEPSGVAYKFFGAAVGKGRQGAKTEIEKLKLTETTCTDAIKEMAKILHKLHDESKDKPFELEMAWVTEANGFKAQTVPRDVV 458
            MSSTGAGYDVSPTTFSPDGRLFQVEYA KAVENSGTAIGLKCKDG++LAVENL+LSKLLV+NSNRRT+ VG H+SIAVAGLVSDGRQVVNRAREEAENYKDNYGSD+PP++LADRLAQFVH+FTLNYSLRPFGASVLIAG+DAF +++EL+VIEPSGVAYKFFGAA+GKGRQGAKTEIEKLKLTETTC DA+KEMAKILHKLHDESKDKPFELEMAWVT ANG+KAQ VPRD+V
Sbjct:    1 MSSTGAGYDVSPTTFSPDGRLFQVEYAGKAVENSGTAIGLKCKDGVILAVENLMLSKLLVSNSNRRTYNVGSHISIAVAGLVSDGRQVVNRAREEAENYKDNYGSDMPPTILADRLAQFVHYFTLNYSLRPFGASVLIAGHDAFTDSIELNVIEPSGVAYKFFGAALGKGRQGAKTEIEKLKLTETTCDDAVKEMAKILHKLHDESKDKPFELEMAWVTAANGYKAQRVPRDIV 234          
BLAST of NO28G01780 vs. NCBI_GenBank
Match: CBN75335.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 355.5 bits (911), Expect = 2.600e-94
Identity = 170/255 (66.67%), Postives = 216/255 (84.71%), Query Frame = 0
Query:  224 MSSTGAGYDVSPTTFSPDGRLFQVEYASKAVENSGTAIGLKCKDGIVLAVENLLLSKLLVANSNRRTFGVGPHVSIAVAGLVSDGRQVVNRAREEAENYKDNYGSDIPPSVLADRLAQFVHFFTLNYSLRPFGASVLIAGYDAFMEALELHVIEPSGVAYKFFGAAVGKGRQGAKTEIEKLKLTETTCTDAIKEMAKILHKLHDESKDKPFELEMAWVTEANGFKAQTVPRDVVAAAEKWAKEAIEAEDMDESDD 479
            MSSTGAGYD+S TTFSPDG++FQVEYA+KAVENSGTA+G++CKDG++LAVE LL+SK+LVA SNRR  GV  HV +AVAGL +D RQ+V R R+E   Y +NYGS +PPS+LADRLAQ+VH+FTL+ SLRPFGASVL+AGYD  ++  EL+V+EPSGV Y++FGAAVGKGRQ AKTE+EKLK  + TC +A+K++ KILH LHDE+KDKPFELEM+WV E +G+K Q VP+  V  AE+WAKE+IE+++MD+ +D
Sbjct:    1 MSSTGAGYDLSATTFSPDGKIFQVEYATKAVENSGTAMGVRCKDGVLLAVEKLLISKMLVAGSNRRVHGVSKHVGMAVAGLSADARQIVYRGRDEVAGYIENYGSQMPPSMLADRLAQYVHYFTLHGSLRPFGASVLVAGYDVELKKHELYVVEPSGVMYRYFGAAVGKGRQAAKTEMEKLKFDDMTCKEAMKQVCKILHVLHDEAKDKPFELEMSWVCEESGWKYQAVPQAQVKEAEEWAKESIESDEMDDDED 255          
BLAST of NO28G01780 vs. NCBI_GenBank
Match: XP_009040513.1 (hypothetical protein AURANDRAFT_55034 [Aureococcus anophagefferens] >EGB04777.1 hypothetical protein AURANDRAFT_55034 [Aureococcus anophagefferens])

HSP 1 Score: 317.4 bits (812), Expect = 7.700e-83
Identity = 150/243 (61.73%), Postives = 198/243 (81.48%), Query Frame = 0
Query:  224 MSSTGAGYDVSPTTFSPDGRLFQVEYASKAVENSGTAIGLKCKDGIVLAVENLLLSKLLVANSNRRTFGVGPHVSIAVAGLVSDGRQVVNRAREEAENYKDNYGSDIPPSVLADRLAQFVHFFTLNYSLRPFGASVLIAGYDAFMEALELHVIEPSGVAYKFFGAAVGKGRQGAKTEIEKLKLTETTCTDAIKEMAKILHKLHDESKDKPFELEMAWVTEANGFKAQTVPRDVVAAAEKWAKE 467
            M+STGAGYD+SPTTFSPDGR+FQVEYA+KAVEN+GT +G+KCKDG+VL VE ++LSK+L+ +SNRR   V  H  +A AGL +DGRQVV RAREE +NY++ YG  IPP+VLA RL+++VH+FT++ +LRPFG S +IA YD   +A +L+V+EP+GV  ++FGAA+GKGRQ AK+EIEKL LT  TC DA+KE+AK+++  +DESKDKPF LEMAW+ E   F+ Q VP+D++ AAE WAK+
Sbjct:    1 MASTGAGYDLSPTTFSPDGRIFQVEYATKAVENAGTVVGMKCKDGVVLGVEKVMLSKMLLPSSNRRVATVSAHAGVAQAGLAADGRQVVARAREECDNYEEVYGIPIPPTVLAQRLSEYVHYFTIHGALRPFGTSTMIAAYDEREKAHQLYVLEPTGVCLRYFGAALGKGRQSAKSEIEKLDLTTLTCRDALKEIAKMIYTCYDESKDKPFILEMAWLCEETKFEYQLVPQDLIDAAETWAKK 243          
BLAST of NO28G01780 vs. NCBI_GenBank
Match: GAX97263.1 (Hypothetical protein PINS_005096 [Pythium insidiosum])

HSP 1 Score: 309.7 bits (792), Expect = 1.600e-80
Identity = 151/257 (58.75%), Postives = 202/257 (78.60%), Query Frame = 0
Query:  224 MSSTGAGYDVSPTTFSPDGRLFQVEYASKAVENSGTAIGLKCKDGIVLAVENLLLSKLLVANSNRRTFGVGPHVSIAVAGLVSDGRQVVNRAREEAENYKDNYGSDIPPSVLADRLAQFVHFFTLNYSLRPFGASVLIAGYDAFMEALELHVIEPSGVAYKFFGAAVGKGRQGAKTEIEKLKLTETTCTDAIKEMAKILHKLHDESKDKPFELEMAWVTEANGFKAQTVPRDVVAAAEKWAKEAIEAEDMDESDDEE 481
            MSSTGAGYD S  TFSP+GR+FQVEYA KAVENSGTAIG+KCKDG+++ VE  LLSK+LV  ++RR + V  H+ +++AGLV+DGRQ+V+RAREEA +YK NYGS +PP VLA+R+ Q++H++TL  S+RPFG S++IAGYDA  +   LH+IEPSGV Y + G A+GKG+Q AKTEIEK KL + TC +A+K +AKIL+KLH+E +  PFELE++W+ E   ++ Q VP ++     +WAK+AIE E+M + DDEE
Sbjct: 1795 MSSTGAGYDWSAGTFSPEGRIFQVEYAKKAVENSGTAIGIKCKDGVIMGVEKTLLSKMLVPGTHRRIYAVDRHIGLSMAGLVADGRQLVSRAREEALSYKKNYGSAVPPHVLAERMGQYIHYYTLYGSVRPFGTSIMIAGYDADEKKTTLHMIEPSGVTYSYRGCAIGKGQQAAKTEIEKDKLFDMTCREAMKYVAKILNKLHEEVR-HPFELELSWLCEETNWQHQLVPDNLRDEVNQWAKQAIEDEEMGDDDDEE 2050          
BLAST of NO28G01780 vs. NCBI_GenBank
Match: GAQ86485.1 (20S proteasome regulatory subunit alpha protein [Klebsormidium nitens])

HSP 1 Score: 308.9 bits (790), Expect = 2.800e-80
Identity = 152/252 (60.32%), Postives = 198/252 (78.57%), Query Frame = 0
Query:  224 MSSTGAGYDVSPTTFSPDGRLFQVEYASKAVENSGTAIGLKCKDGIVLAVENLLLSKLLVANSNRRTFGVGPHVSIAVAGLVSDGRQVVNRAREEAENYKDNYGSDIPPSVLADRLAQFVHFFTLNYSLRPFGASVLIAGYDAFMEALELHVIEPSGVAYKFFGAAVGKGRQGAKTEIEKLKLTETTCTDAIKEMAKILHKLHDESKDKPFELEMAWVTEANGFKAQTVPRDVVAAAEKWAKEAIEAEDMDE 476
            MSS G GYD+S TTFSPDGR+FQ EYA+KAV+NSGTA+G++CKDGIVL VE L++SK+LV  SNRR   V  H+ +A AGLV+DGRQ+VNRAR EA NYK  YG  IP  V+ADR+A FVH +TL +S+RPFG+SVL+  YD   E  +L+ IEP+G++++FFG A+GKGRQ AKTEIEKLKL+E TC + +  +AKI++ +HDE+KDK FELE++W+ E +G + + VP DV+A AE+ AK A E EDMD+
Sbjct:    1 MSSIGTGYDLSSTTFSPDGRVFQTEYATKAVDNSGTAVGIRCKDGIVLGVEKLVISKMLVEGSNRRILSVDRHIGVATAGLVADGRQIVNRARAEASNYKTFYGDAIPGQVIADRVATFVHLYTLYWSVRPFGSSVLLGVYD--KEGPQLYAIEPTGISHRFFGTAIGKGRQAAKTEIEKLKLSEMTCREGVTAVAKIIYGVHDEAKDKAFELELSWICEESGREHKRVPADVLAEAERLAKAAQE-EDMDD 249          
BLAST of NO28G01780 vs. NCBI_GenBank
Match: EJK76103.1 (hypothetical protein THAOC_02158 [Thalassiosira oceanica])

HSP 1 Score: 308.5 bits (789), Expect = 3.600e-80
Identity = 150/267 (56.18%), Postives = 205/267 (76.78%), Query Frame = 0
Query:  224 MSSTGAGYDVSPTTFSPDGRLFQVEYASKAVENSGTAIGLKCKDGIVLAVENLLLSKLLVA-NSNRRTFGVGPHVSIAVAGLVSDGRQVVNRAREEAENYKDNYGSDIPPSVLADRLAQFVHFFTLNYSLRPFGASVLIAGYDAFMEALELHVIEPSGVAYKFFGAAVGKGRQGAKTEIEKLKLTE---------TTCTDAIKEMAKILHKLHDESKDKPFELEMAWVTEANGFKAQTVPRDVVAAAEKWAKEAIEAEDMDESDDEE 481
            M+S+G+GYD+S  TFSPDGR+FQVEYA+KAVEN+GTA+GLKC+DG+V+AVE  L +K+LVA  + RR   V  H  +A+ G VSDGRQ++NRAREEA NY++ YG+ IPP  LA RL+ +VH+FTL+ +LRPFGAS L+A YD   ++  LH++EPSG++Y+++GAA G+GRQ A+TE+EKL +            TC + +K++AKI++ L+DESKDKPFELEM+W+ E +G+K   VPRD +AAA +WAK+ IE    DESDDE+
Sbjct:    1 MASSGSGYDLSSATFSPDGRIFQVEYAAKAVENAGTALGLKCRDGVVMAVEKPLQNKMLVAKTTGRRIHTVDEHSGVAITGFVSDGRQIINRAREEASNYEETYGTKIPPKTLAQRLSTYVHYFTLHGALRPFGASTLVASYDPATKSHSLHMVEPSGISYEYYGAAAGRGRQPARTEMEKLAINPKHNEGEAELITCEEGVKQLAKIIYTLYDESKDKPFELEMSWLCEGSGWKHAGVPRDTIAAAVEWAKQQIE----DESDDED 263          
BLAST of NO28G01780 vs. NCBI_GenBank
Match: XP_008872949.1 (hypothetical protein H310_08821 [Aphanomyces invadans] >ETV98752.1 hypothetical protein H310_08821 [Aphanomyces invadans])

HSP 1 Score: 307.4 bits (786), Expect = 8.000e-80
Identity = 153/256 (59.77%), Postives = 200/256 (78.12%), Query Frame = 0
Query:  224 MSSTGAGYDVSPTTFSPDGRLFQVEYASKAVENSGTAIGLKCKDGIVLAVENLLLSKLLVANSNRRTFGVGPHVSIAVAGLVSDGRQVVNRAREEAENYKDNYGSDIPPSVLADRLAQFVHFFTLNYSLRPFGASVLIAGYDAFMEALELHVIEPSGVAYKFFGAAVGKGRQGAKTEIEKLKLTETTCTDAIKEMAKILHKLHDESKDKPFELEMAWVTEANGFKAQTVPRDVVAAAEKWAKEAIEAEDMDESDDE 480
            MSSTGAGYD+S  TFSPDGR+FQVEYA KAVENSGTAIG+ CKDG+V+ VE +LLSKLLV  ++RR   +  HV +A++GLV+DGRQ+VNRAREEA +YK NYGS IPP +LADR++Q+VH++TL  S+RPFG S+++AG D       L+VIEPSGV+Y+F GAA+GKG Q AKTEIEK KL + TC +AIK +AKIL+ LHDE K  PFELE++W+ E + ++ Q VP ++   A  WA ++I+ +DM + DD+
Sbjct:  325 MSSTGAGYDLSAGTFSPDGRIFQVEYAKKAVENSGTAIGINCKDGVVMGVEKILLSKLLVPGTHRRIHAIDRHVGLAISGLVADGRQLVNRAREEAASYKKNYGSPIPPQMLADRMSQYVHYYTLYGSVRPFGTSIMLAGRDVDTGKTFLNVIEPSGVSYRFRGAAMGKGEQAAKTEIEKYKLFDLTCREAIKYIAKILNVLHDEVK-HPFELELSWLCEESNWQHQLVPANIRDDATAWALQSIQDDDMADDDDD 579          
BLAST of NO28G01780 vs. NCBI_GenBank
Match: OQS07191.1 (proteasome subunit alpha type-3 [Thraustotheca clavata])

HSP 1 Score: 305.1 bits (780), Expect = 4.000e-79
Identity = 153/256 (59.77%), Postives = 198/256 (77.34%), Query Frame = 0
Query:  224 MSSTGAGYDVSPTTFSPDGRLFQVEYASKAVENSGTAIGLKCKDGIVLAVENLLLSKLLVANSNRRTFGVGPHVSIAVAGLVSDGRQVVNRAREEAENYKDNYGSDIPPSVLADRLAQFVHFFTLNYSLRPFGASVLIAGYDAFMEALELHVIEPSGVAYKFFGAAVGKGRQGAKTEIEKLKLTETTCTDAIKEMAKILHKLHDESKDKPFELEMAWVTEANGFKAQTVPRDVVAAAEKWAKEAIEAEDMDESDDE 480
            MSSTGAGYD+S  TFSPDGR+FQVEYA KAVE+SGTAIG+ C DG+V+ VE +LLSK+LV  ++RR   V  HV +A+AGLV+DGRQ+VNRAREEA  YK NYGS IPP +LADR++Q+VH+FTL  S+RPFG S+++AG D       L+VIEPSGV+Y+F G A+GKG Q AKTEIEK K+ + TC +AIK +AKIL+ LHDE K  PFELE++W+ E + ++ Q VP ++  AA  WA ++IE ++M + DDE
Sbjct:    1 MSSTGAGYDLSAGTFSPDGRIFQVEYAKKAVESSGTAIGIHCTDGVVMGVEKILLSKMLVPGTHRRIHAVDRHVGLAMAGLVADGRQLVNRAREEASGYKKNYGSAIPPQILADRMSQYVHYFTLYGSVRPFGTSIMLAGRDVDTGKCYLNVIEPSGVSYRFRGCAMGKGEQAAKTEIEKYKIFDMTCREAIKYIAKILNVLHDEVK-HPFELELSWLCEESKWQHQLVPDNIRDAANAWALQSIEEDEMADDDDE 255          
BLAST of NO28G01780 vs. NCBI_GenBank
Match: XP_008606342.1 (20S proteasome subunit alpha 7 [Saprolegnia diclina VS20] >EQC39868.1 20S proteasome subunit alpha 7 [Saprolegnia diclina VS20])

HSP 1 Score: 301.2 bits (770), Expect = 5.700e-78
Identity = 150/255 (58.82%), Postives = 198/255 (77.65%), Query Frame = 0
Query:  224 MSSTGAGYDVSPTTFSPDGRLFQVEYASKAVENSGTAIGLKCKDGIVLAVENLLLSKLLVANSNRRTFGVGPHVSIAVAGLVSDGRQVVNRAREEAENYKDNYGSDIPPSVLADRLAQFVHFFTLNYSLRPFGASVLIAGYDAFMEALELHVIEPSGVAYKFFGAAVGKGRQGAKTEIEKLKLTETTCTDAIKEMAKILHKLHDESKDKPFELEMAWVTEANGFKAQTVPRDVVAAAEKWAKEAIEAEDMDESDD 479
            MSSTGAGYD+S  TFSPDGR+FQVEYA KAVE+SGTAIG+ C DG+V+ VE +LLSK+LV  ++RR   +  HV +A+AGLV+DGRQ+VNRAREEA +YK NYGS IPP VLADR++Q+VH+FTL  S+RPFG S+++AG D       L+VIEPSGV+Y+F G A+GKG Q AKTEIEK K+ + TC +AIK +AKIL+ LHDE K  PFELE++W+ E + ++ Q VP ++   A  WA ++I+A++M + D+
Sbjct:    1 MSSTGAGYDLSVGTFSPDGRIFQVEYAKKAVESSGTAIGIHCTDGVVMGVEKILLSKMLVPGTHRRVHAIDRHVGLAMAGLVADGRQLVNRAREEASSYKKNYGSPIPPQVLADRMSQYVHYFTLYGSVRPFGTSIMLAGRDVDTGKCYLNVIEPSGVSYRFRGCAMGKGEQAAKTEIEKYKIFDMTCREAIKYIAKILNVLHDEVK-HPFELELSWLCEESKWQHQLVPDNIRDEATAWALQSIQADEMADDDE 254          
The following BLAST results are available for this feature:
BLAST of NO28G01780 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005855873.11.700e-13089.6620S proteasome subunit alpha 7 [Nannochloropsis ga... [more]
EWM20632.14.100e-11688.89proteasome subunit alpha type 3 [Nannochloropsis g... [more]
CBN75335.12.600e-9466.67conserved unknown protein [Ectocarpus siliculosus][more]
XP_009040513.17.700e-8361.73hypothetical protein AURANDRAFT_55034 [Aureococcus... [more]
GAX97263.11.600e-8058.75Hypothetical protein PINS_005096 [Pythium insidios... [more]
GAQ86485.12.800e-8060.3220S proteasome regulatory subunit alpha protein [K... [more]
EJK76103.13.600e-8056.18hypothetical protein THAOC_02158 [Thalassiosira oc... [more]
XP_008872949.18.000e-8059.77hypothetical protein H310_08821 [Aphanomyces invad... [more]
OQS07191.14.000e-7959.77proteasome subunit alpha type-3 [Thraustotheca cla... [more]
XP_008606342.15.700e-7858.8220S proteasome subunit alpha 7 [Saprolegnia diclin... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR087ncniR087Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR101ngnoR101Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO28G01780.2NO28G01780.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO28G01780.1NO28G01780.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|612504gene_11127Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100873g2gene9774Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO28G01780.2NO28G01780.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO28G01780.1NO28G01780.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO28G01780 ID=NO28G01780|Name=NO28G01780|organism=Nannochloropsis oceanica|type=gene|length=4661bp
ATGAGTACAAGCCATGCTGTTCCAGACTTCCTGCTGGAGGAGCTGGGAAG
TCAGgtatgtaccgtggagctaccgatgcaccctcccctccctccctccc
ctcctgccctgcctcgtttcacccgtctccatgttgtggtgagccataca
gcaaagtcgcctttatctgcttcatcttccccttctttatagtcttagtc
tccgtgccggctagtcgagatccctgcgaacataggtcttaccctgtccc
tcggccgcatcccacattccacccctccgtccctcccttcctccctcctc
agGCGCCCGGCTTGGAGAGCGACGGAAGGCCGGAGCTCAACGACGACGTG
GACCGACTCACGCGATGGTGGCTGCAGGAGGAGGCAGCCCCAGAATTACT
GCCTTTCCAGACGGAGACCGTGCAAGACTTGCATGCCCTAGTGGAGCAGC
AGCAGgtagggagagggagggaaagcgggaaagagggagggaaggaggaa
agggagggtgggtgaatgccagcgatactagtccgttcatgcgaaaccgg
aatggccctgtcttaccctcccgccctccctccctccctccctccctccc
tcccttcttcccagGGTTTCGTGGACGAGTCGCGCAACACAGTGGAAGAG
GCCAGCTCTGCCCTACTCTATCAGATGGAGATCGACCGgtacaccccctc
cctccctccctccctccctccctccctccctccctccctccctccctccc
ttcatcactccctcccctgcctgcctttctttccttcatatctcctctga
ccctccctcctctccctccctccctccatctccccccaagGGTTAAGTAC
GTGCTAGCCCGATACCTCCGAGCTCGTCTTTGCAAACTCGAGAGACACAT
TTTGCATGTGGCCTTGGACCCAGgtagggagggagggagggagggaggga
gggagggaggagtgtgcagaggatcagagagaaagacttgagatgaccat
tcacaacgctccctccctccctccctccctccctccctccctcgttcctc
ccagACATGCGTCAACGCCTCTCTCCGTACGAGTTGCGGTTCGCCGGTCA
ATACCTGGACCTGGTGgtgagggagggagggagagagggagagagggagg
gaggaagggaggaagggaggaagggagggagggagggaggattttttgga
tgattgacctgctgattgatggatggatggatagatggagcctttttcca
agtcattctctacatcagcttgagcctcatgccatcatcccttcctccct
ccctccctctctcccacgtcagGACAAGCACGCCCACGCCATGGTCCTTG
ACCATATGCCAGAAGGCTTCCAGTCGCTCACACAGgtagtgaggggggga
gggagagagggagggagggaaaaaggaaagaggatgtacgacaggaaaaa
aggcctgatatttacgcaaccgtcctcctcgcccgccgtccctccttccc
tccctccctccctccctccctccctccctccctccctccctccctcctcc
cgtctgcagGAGGCCCACGGAGAGCGGCCGGTCGATGCGCCGGACCTCGA
TCGCTTCGTTTTCTGCCGCGTCCGCCAAGATAGCTTCAACGTACAGgtaa
ggaaggaggggaggatggggagaggaagcaatagaagggggtaaggaggg
aaggagggaaggaaggaaggaggacacacgggcatatgaatggtccttga
attttcatccttgcttcttcctctctccctccctttggctttccctccat
tctcctcagGTGGACGACTCGGCCGACGCTGGCTCGAACGTGGCGGGCAT
CCAGGATTTGATGGAAGGAGACGTGCATGTGCTTAAATACAGGGTGgtaa
gacctttggtggagagggaggcggtggaactcatctaacgtgcacaaaaa
tgaacaaatataaagaattgaaaaggaagagagagaaaaggaggaagaga
acgactgaaggtgggcgatgtagcttgggtgagggagggagggagggagg
aacgcaaagaacaaagatttgtatgtatgccggtaatacaacaacaacag
ccatgcttttctgtcagtttccggtgtttccgttccttttcagcctcaca
tcagtggaaaccgtgaacttgtcagcaacctacgacacaaagcatgggga
gggacgaggtcgggtatcacccaccccggcccgtcatcgccgaagccgat
cgtcgaagaagctccacatgccccttgcctgtatgcttcacgaccgcctc
ctcaataactcaccacgcacagacccgtctgcaaaatcgttggcacaaat
gaacgataaccgagatcagagagacacagcgcgaggcacctttctctgct
ccaacaccccccccttcctctcgctgcctctccatcattattcatccttc
ctcatgttcgccccccccaccctccctccctcattccctctctcctcctc
tctccaaaacattagCCAACCATGAGTTCAACGGGTGCGGGGTACGATGT
CTCGCCCACCACCTTCTCGCCCGACGGCCGCCTCTTCCAAGTGGAGTACG
CGAGTAAAGCGGTGGAGAACAGgtatggaggggagtgagggaaggaggga
gggaggaggaagggagagatgtgcctccagcggatatttgccggagaaca
aataagcgggcgttgtctccagctactcatgttacactggagtagaggct
ggtgcgtgtgtccgcgggctctgcttgtgtgctgggcttggcctttcctg
cctgcttcttctcatttctccactcgcacacgtcattcccatgctccttt
ccttcttcttctctctccctccctccaaccgccctcctcctcagTGGCAC
GGCCATTGGGCTAAAGTGCAAGGACGGCATTGTCCTGGCAGTGGAGAATC
TGCTCTTGTCTAAGCTCCTGGTGGCCAACTCGAACCGACGCACCTTTGGG
GTAGGCCCGCACGTCTCCATCGCCGTGGCTGgtacgaggaagagagggag
agagggagggagggaaaggctggagggagcacaacatctctatttggtac
aacagcgcgctgcgtcagtgtcctgacttttatccacctcgtcttccctc
tctccctcctgccctccgtccagGCCTCGTTTCAGACGGCCGGCAAGTGG
TAAACCGCGCCCGGGAAGAGGCTGAGAACTACAAGGACAACTACGGCAGT
GATATCCCCCCTTCAGgtacgtcctccctgcctccctcccctcctctacc
cctttattcggcagacagtcaccttcgccgcatctcgttgcaataaactc
cagtagatagactgccttatctcactcacatgttcattccaattcattct
ttcggctcattcccctacctcccactcttctctcaaaatactgacttccc
ccccccttcctccctccctcccaccattcctagTCCTGGCCGATCGCCTG
GCCCAGTTCGTCCACTTCTTCACCCTCAACTACTCCCTGCGGCCGTTTGG
AGCCTCCGTGCTCATCGCCGGTTATGACGCTTTCATGGAGGCTCTAGAGC
TGCACGTCATCGAACCCTCAGGCGTGGCCTACgtaagcgcttctccttcc
ctccttccctccctccctccctcgcactctccttccctctcttccgtctt
tctgttcgtcttgttaagcccgtcattggtctggaatccacatataccca
cttttgataaatatatttaaaccatccctccctccctccctccctccctc
cctcccctccagAAATTCTTCGGTGCCGCCGTGGGGAAGGGCCGACAGGG
AGCCAAGACCGAGATCGAGAAACTGAAGCTTACCGAGACCACCTGCACCG
ATGCCATCAAGGAGATGGCGAAAATgtaagagagccctcaattcctccct
cctttcctccctccccttcctccctccctttccccctcctcctcaccatc
atcgtactggcctcgccgagcccgtccttttgacacgcatatatatccat
tcttgcccctccctcccttcctccccccctccctccagCCTCCACAAGCT
GCATGACGAGAGCAAGGACAAACCATTCGAGCTGGAGATGGCGTGGGTCA
CCGAGGCCAACGGATTTAAGGCCCAAACCGTCCCCCGCGACGTTGTgtaa
gtcccctccttcctccccttccttcccttcctttctccttccctgccttt
tcggttgacatatgaattaaatacgaagagaggcaagcacgaagagtttc
caatcgctcacacctctttccttcgactttatcccccctctccctcccct
cccgtcactagTGCGGCGGCTGAGAAGTGGGCCAAGGAGGCCATCGAGGC
CGAGGATATGGACGAGAGTGATGATGAGGAGGGAGGGGCAGCATAAGGAA
TAAAAGAAAGGAGGAAGGGAAGGAGGGAAAGCTTTTCTATGGAATGGGAA
CAGAGAGGCGGGTGGATGTATTCATGGAGGGGAGGGGAGGGAGGGAGGAG
AACTAAAAGGGGAAGTGTGGGGAAAGGCCAATGAAAGAAAGATTGAAAGA
AACCGGAAAAGGATCTACCCCAGCACCTTATCATCGAAGCGTTGTGTACA
CCGCATCATGT
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protein sequence of NO28G01780.2

>NO28G01780.2-protein ID=NO28G01780.2-protein|Name=NO28G01780.2|organism=Nannochloropsis oceanica|type=polypeptide|length=458bp
MSTSHAVPDFLLEELGSQAPGLESDGRPELNDDVDRLTRWWLQEEAAPEL
LPFQTETVQDLHALVEQQQGFVDESRNTVEEASSALLYQMEIDRVKYVLA
RYLRARLCKLERHILHVALDPDMRQRLSPYELRFAGQYLDLVDKHAHAMV
LDHMPEGFQSLTQEAHGERPVDAPDLDRFVFCRVRQDSFNVQVDDSADAG
SNVAGIQDLMEGDVHVLKYRVPTMSSTGAGYDVSPTTFSPDGRLFQVEYA
SKAVENSGTAIGLKCKDGIVLAVENLLLSKLLVANSNRRTFGVGPHVSIA
VAGLVSDGRQVVNRAREEAENYKDNYGSDIPPSVLADRLAQFVHFFTLNY
SLRPFGASVLIAGYDAFMEALELHVIEPSGVAYKFFGAAVGKGRQGAKTE
IEKLKLTETTCTDAIKEMAKILHKLHDESKDKPFELEMAWVTEANGFKAQ
TVPRDVV*
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protein sequence of NO28G01780.1

>NO28G01780.1-protein ID=NO28G01780.1-protein|Name=NO28G01780.1|organism=Nannochloropsis oceanica|type=polypeptide|length=485bp
MSTSHAVPDFLLEELGSQAPGLESDGRPELNDDVDRLTRWWLQEEAAPEL
LPFQTETVQDLHALVEQQQGFVDESRNTVEEASSALLYQMEIDRVKYVLA
RYLRARLCKLERHILHVALDPDMRQRLSPYELRFAGQYLDLVDKHAHAMV
LDHMPEGFQSLTQEAHGERPVDAPDLDRFVFCRVRQDSFNVQVDDSADAG
SNVAGIQDLMEGDVHVLKYRVPTMSSTGAGYDVSPTTFSPDGRLFQVEYA
SKAVENSGTAIGLKCKDGIVLAVENLLLSKLLVANSNRRTFGVGPHVSIA
VAGLVSDGRQVVNRAREEAENYKDNYGSDIPPSVLADRLAQFVHFFTLNY
SLRPFGASVLIAGYDAFMEALELHVIEPSGVAYKFFGAAVGKGRQGAKTE
IEKLKLTETTCTDAIKEMAKILHKLHDESKDKPFELEMAWVTEANGFKAQ
TVPRDVVAAAEKWAKEAIEAEDMDESDDEEGGAA*
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