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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr28 | genome | chr28:565566..570226 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO28G01780.2 vs.
Match: XP_005855873.1 (20S proteasome subunit alpha 7 [Nannochloropsis gaditana CCMP526]; EKU20482.1 20S proteasome subunit alpha 7 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 432.2 bits (1110), Expect = 2.000e-117 Identity = 209/234 (89.32%), Postives = 227/234 (97.01%), Query Frame = 0
Query: 224 MSSTGAGYDVSPTTFSPDGRLFQVEYASKAVENSGTAIGLKCKDGIVLAVENLLLSKLLVANSNRRTFGVGPHVSIAVAGLVSDGRQVVNRAREEAENYKDNYGSDIPPSVLADRLAQFVHFFTLNYSLRPFGASVLIAGYDAFMEALELHVIEPSGVAYKFFGAAVGKGRQGAKTEIEKLKLTETTCTDAIKEMAKILHKLHDESKDKPFELEMAWVTEANGFKAQTVPRDVV 458
MSSTGAGYDVSPTTFSPDGRLFQVEYA KAVENSGTAIGLKCKDG++LAVENL+LSKLLV+NSNRRT+ VG H+SIAVAGLVSDGRQVVNRAREEAENYKDNYGSD+PP++LADRLAQFVH+FTLNYSLRPFGASVLIAG+DAF +++ELHVIEPSGVAYKFFGAA+GKGRQGAKTEIEKLKLTETTC DA+KEMAKILHKLHDESKDKPFELEMAWVT ANG+KAQ VPRD+V
Sbjct: 1 MSSTGAGYDVSPTTFSPDGRLFQVEYAGKAVENSGTAIGLKCKDGVILAVENLMLSKLLVSNSNRRTYNVGSHISIAVAGLVSDGRQVVNRAREEAENYKDNYGSDMPPTILADRLAQFVHYFTLNYSLRPFGASVLIAGHDAFTDSIELHVIEPSGVAYKFFGAALGKGRQGAKTEIEKLKLTETTCDDAVKEMAKILHKLHDESKDKPFELEMAWVTAANGYKAQRVPRDIV 234
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO28G01780.2 ID=NO28G01780.2|Name=NO28G01780.2|organism=Nannochloropsis oceanica|type=mRNA|length=1835bp ATGAGTACAAGCCATGCTGTTCCAGACTTCCTGCTGGAGGAGCTGGGAAG TCAGGCGCCCGGCTTGGAGAGCGACGGAAGGCCGGAGCTCAACGACGACG TGGACCGACTCACGCGATGGTGGCTGCAGGAGGAGGCAGCCCCAGAATTA CTGCCTTTCCAGACGGAGACCGTGCAAGACTTGCATGCCCTAGTGGAGCA GCAGCAGGGTTTCGTGGACGAGTCGCGCAACACAGTGGAAGAGGCCAGCT CTGCCCTACTCTATCAGATGGAGATCGACCGGGTTAAGTACGTGCTAGCC CGATACCTCCGAGCTCGTCTTTGCAAACTCGAGAGACACATTTTGCATGT GGCCTTGGACCCAGACATGCGTCAACGCCTCTCTCCGTACGAGTTGCGGT TCGCCGGTCAATACCTGGACCTGGTGGACAAGCACGCCCACGCCATGGTC CTTGACCATATGCCAGAAGGCTTCCAGTCGCTCACACAGGAGGCCCACGG AGAGCGGCCGGTCGATGCGCCGGACCTCGATCGCTTCGTTTTCTGCCGCG TCCGCCAAGATAGCTTCAACGTACAGGTGGACGACTCGGCCGACGCTGGC TCGAACGTGGCGGGCATCCAGGATTTGATGGAAGGAGACGTGCATGTGCT TAAATACAGGGTGCCAACCATGAGTTCAACGGGTGCGGGGTACGATGTCT CGCCCACCACCTTCTCGCCCGACGGCCGCCTCTTCCAAGTGGAGTACGCG AGTAAAGCGGTGGAGAACAGTGGCACGGCCATTGGGCTAAAGTGCAAGGA CGGCATTGTCCTGGCAGTGGAGAATCTGCTCTTGTCTAAGCTCCTGGTGG CCAACTCGAACCGACGCACCTTTGGGGTAGGCCCGCACGTCTCCATCGCC GTGGCTGGCCTCGTTTCAGACGGCCGGCAAGTGGTAAACCGCGCCCGGGA AGAGGCTGAGAACTACAAGGACAACTACGGCAGTGATATCCCCCCTTCAG TCCTGGCCGATCGCCTGGCCCAGTTCGTCCACTTCTTCACCCTCAACTAC TCCCTGCGGCCGTTTGGAGCCTCCGTGCTCATCGCCGGTTATGACGCTTT CATGGAGGCTCTAGAGCTGCACGTCATCGAACCCTCAGGCGTGGCCTACA AATTCTTCGGTGCCGCCGTGGGGAAGGGCCGACAGGGAGCCAAGACCGAG ATCGAGAAACTGAAGCTTACCGAGACCACCTGCACCGATGCCATCAAGGA GATGGCGAAAATCCTCCACAAGCTGCATGACGAGAGCAAGGACAAACCAT TCGAGCTGGAGATGGCGTGGGTCACCGAGGCCAACGGATTTAAGGCCCAA ACCGTCCCCCGCGACGTTGTGTAAGTCCCCTCCTTCCTCCCCTTCCTTCC CTTCCTTTCTCCTTCCCTGCCTTTTCGGTTGACATATGAATTAAATACGA AGAGAGGCAAGCACGAAGAGTTTCCAATCGCTCACACCTCTTTCCTTCGA CTTTATCCCCCCTCTCCCTCCCCTCCCGTCACTAGTGCGGCGGCTGAGAA GTGGGCCAAGGAGGCCATCGAGGCCGAGGATATGGACGAGAGTGATGATG AGGAGGGAGGGGCAGCATAAGGAATAAAAGAAAGGAGGAAGGGAAGGAGG GAAAGCTTTTCTATGGAATGGGAACAGAGAGGCGGGTGGATGTATTCATG GAGGGGAGGGGAGGGAGGGAGGAGAACTAAAAGGGGAAGTGTGGGGAAAG GCCAATGAAAGAAAGATTGAAAGAAACCGGAAAAGGATCTACCCCAGCAC CTTATCATCGAAGCGTTGTGTACACCGCATCATGT back to topprotein sequence of NO28G01780.2 >NO28G01780.2-protein ID=NO28G01780.2-protein|Name=NO28G01780.2|organism=Nannochloropsis oceanica|type=polypeptide|length=458bp MSTSHAVPDFLLEELGSQAPGLESDGRPELNDDVDRLTRWWLQEEAAPEL LPFQTETVQDLHALVEQQQGFVDESRNTVEEASSALLYQMEIDRVKYVLA RYLRARLCKLERHILHVALDPDMRQRLSPYELRFAGQYLDLVDKHAHAMV LDHMPEGFQSLTQEAHGERPVDAPDLDRFVFCRVRQDSFNVQVDDSADAG SNVAGIQDLMEGDVHVLKYRVPTMSSTGAGYDVSPTTFSPDGRLFQVEYA SKAVENSGTAIGLKCKDGIVLAVENLLLSKLLVANSNRRTFGVGPHVSIA VAGLVSDGRQVVNRAREEAENYKDNYGSDIPPSVLADRLAQFVHFFTLNY SLRPFGASVLIAGYDAFMEALELHVIEPSGVAYKFFGAAVGKGRQGAKTE IEKLKLTETTCTDAIKEMAKILHKLHDESKDKPFELEMAWVTEANGFKAQ TVPRDVV* back to topmRNA from alignment at chr28:565566..570226- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO28G01780.2 ID=NO28G01780.2|Name=NO28G01780.2|organism=Nannochloropsis oceanica|type=mRNA|length=4661bp|location=Sequence derived from alignment at chr28:565566..570226- (Nannochloropsis oceanica) ATGAGTACAAGCCATGCTGTTCCAGACTTCCTGCTGGAGGAGCTGGGAAG
TCAGGTATGTACCGTGGAGCTACCGATGCACCCTCCCCTCCCTCCCTCCC
CTCCTGCCCTGCCTCGTTTCACCCGTCTCCATGTTGTGGTGAGCCATACA
GCAAAGTCGCCTTTATCTGCTTCATCTTCCCCTTCTTTATAGTCTTAGTC
TCCGTGCCGGCTAGTCGAGATCCCTGCGAACATAGGTCTTACCCTGTCCC
TCGGCCGCATCCCACATTCCACCCCTCCGTCCCTCCCTTCCTCCCTCCTC
AGGCGCCCGGCTTGGAGAGCGACGGAAGGCCGGAGCTCAACGACGACGTG
GACCGACTCACGCGATGGTGGCTGCAGGAGGAGGCAGCCCCAGAATTACT
GCCTTTCCAGACGGAGACCGTGCAAGACTTGCATGCCCTAGTGGAGCAGC
AGCAGGTAGGGAGAGGGAGGGAAAGCGGGAAAGAGGGAGGGAAGGAGGAA
AGGGAGGGTGGGTGAATGCCAGCGATACTAGTCCGTTCATGCGAAACCGG
AATGGCCCTGTCTTACCCTCCCGCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTTCTTCCCAGGGTTTCGTGGACGAGTCGCGCAACACAGTGGAAGAG
GCCAGCTCTGCCCTACTCTATCAGATGGAGATCGACCGGTACACCCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TTCATCACTCCCTCCCCTGCCTGCCTTTCTTTCCTTCATATCTCCTCTGA
CCCTCCCTCCTCTCCCTCCCTCCCTCCATCTCCCCCCAAGGGTTAAGTAC
GTGCTAGCCCGATACCTCCGAGCTCGTCTTTGCAAACTCGAGAGACACAT
TTTGCATGTGGCCTTGGACCCAGGTAGGGAGGGAGGGAGGGAGGGAGGGA
GGGAGGGAGGAGTGTGCAGAGGATCAGAGAGAAAGACTTGAGATGACCAT
TCACAACGCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCGTTCCTC
CCAGACATGCGTCAACGCCTCTCTCCGTACGAGTTGCGGTTCGCCGGTCA
ATACCTGGACCTGGTGGTGAGGGAGGGAGGGAGAGAGGGAGAGAGGGAGG
GAGGAAGGGAGGAAGGGAGGAAGGGAGGGAGGGAGGGAGGATTTTTTGGA
TGATTGACCTGCTGATTGATGGATGGATGGATAGATGGAGCCTTTTTCCA
AGTCATTCTCTACATCAGCTTGAGCCTCATGCCATCATCCCTTCCTCCCT
CCCTCCCTCTCTCCCACGTCAGGACAAGCACGCCCACGCCATGGTCCTTG
ACCATATGCCAGAAGGCTTCCAGTCGCTCACACAGGTAGTGAGGGGGGGA
GGGAGAGAGGGAGGGAGGGAAAAAGGAAAGAGGATGTACGACAGGAAAAA
AGGCCTGATATTTACGCAACCGTCCTCCTCGCCCGCCGTCCCTCCTTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTCC
CGTCTGCAGGAGGCCCACGGAGAGCGGCCGGTCGATGCGCCGGACCTCGA
TCGCTTCGTTTTCTGCCGCGTCCGCCAAGATAGCTTCAACGTACAGGTAA
GGAAGGAGGGGAGGATGGGGAGAGGAAGCAATAGAAGGGGGTAAGGAGGG
AAGGAGGGAAGGAAGGAAGGAGGACACACGGGCATATGAATGGTCCTTGA
ATTTTCATCCTTGCTTCTTCCTCTCTCCCTCCCTTTGGCTTTCCCTCCAT
TCTCCTCAGGTGGACGACTCGGCCGACGCTGGCTCGAACGTGGCGGGCAT
CCAGGATTTGATGGAAGGAGACGTGCATGTGCTTAAATACAGGGTGGTAA
GACCTTTGGTGGAGAGGGAGGCGGTGGAACTCATCTAACGTGCACAAAAA
TGAACAAATATAAAGAATTGAAAAGGAAGAGAGAGAAAAGGAGGAAGAGA
ACGACTGAAGGTGGGCGATGTAGCTTGGGTGAGGGAGGGAGGGAGGGAGG
AACGCAAAGAACAAAGATTTGTATGTATGCCGGTAATACAACAACAACAG
CCATGCTTTTCTGTCAGTTTCCGGTGTTTCCGTTCCTTTTCAGCCTCACA
TCAGTGGAAACCGTGAACTTGTCAGCAACCTACGACACAAAGCATGGGGA
GGGACGAGGTCGGGTATCACCCACCCCGGCCCGTCATCGCCGAAGCCGAT
CGTCGAAGAAGCTCCACATGCCCCTTGCCTGTATGCTTCACGACCGCCTC
CTCAATAACTCACCACGCACAGACCCGTCTGCAAAATCGTTGGCACAAAT
GAACGATAACCGAGATCAGAGAGACACAGCGCGAGGCACCTTTCTCTGCT
CCAACACCCCCCCCTTCCTCTCGCTGCCTCTCCATCATTATTCATCCTTC
CTCATGTTCGCCCCCCCCACCCTCCCTCCCTCATTCCCTCTCTCCTCCTC
TCTCCAAAACATTAGCCAACCATGAGTTCAACGGGTGCGGGGTACGATGT
CTCGCCCACCACCTTCTCGCCCGACGGCCGCCTCTTCCAAGTGGAGTACG
CGAGTAAAGCGGTGGAGAACAGGTATGGAGGGGAGTGAGGGAAGGAGGGA
GGGAGGAGGAAGGGAGAGATGTGCCTCCAGCGGATATTTGCCGGAGAACA
AATAAGCGGGCGTTGTCTCCAGCTACTCATGTTACACTGGAGTAGAGGCT
GGTGCGTGTGTCCGCGGGCTCTGCTTGTGTGCTGGGCTTGGCCTTTCCTG
CCTGCTTCTTCTCATTTCTCCACTCGCACACGTCATTCCCATGCTCCTTT
CCTTCTTCTTCTCTCTCCCTCCCTCCAACCGCCCTCCTCCTCAGTGGCAC
GGCCATTGGGCTAAAGTGCAAGGACGGCATTGTCCTGGCAGTGGAGAATC
TGCTCTTGTCTAAGCTCCTGGTGGCCAACTCGAACCGACGCACCTTTGGG
GTAGGCCCGCACGTCTCCATCGCCGTGGCTGGTACGAGGAAGAGAGGGAG
AGAGGGAGGGAGGGAAAGGCTGGAGGGAGCACAACATCTCTATTTGGTAC
AACAGCGCGCTGCGTCAGTGTCCTGACTTTTATCCACCTCGTCTTCCCTC
TCTCCCTCCTGCCCTCCGTCCAGGCCTCGTTTCAGACGGCCGGCAAGTGG
TAAACCGCGCCCGGGAAGAGGCTGAGAACTACAAGGACAACTACGGCAGT
GATATCCCCCCTTCAGGTACGTCCTCCCTGCCTCCCTCCCCTCCTCTACC
CCTTTATTCGGCAGACAGTCACCTTCGCCGCATCTCGTTGCAATAAACTC
CAGTAGATAGACTGCCTTATCTCACTCACATGTTCATTCCAATTCATTCT
TTCGGCTCATTCCCCTACCTCCCACTCTTCTCTCAAAATACTGACTTCCC
CCCCCCTTCCTCCCTCCCTCCCACCATTCCTAGTCCTGGCCGATCGCCTG
GCCCAGTTCGTCCACTTCTTCACCCTCAACTACTCCCTGCGGCCGTTTGG
AGCCTCCGTGCTCATCGCCGGTTATGACGCTTTCATGGAGGCTCTAGAGC
TGCACGTCATCGAACCCTCAGGCGTGGCCTACGTAAGCGCTTCTCCTTCC
CTCCTTCCCTCCCTCCCTCCCTCGCACTCTCCTTCCCTCTCTTCCGTCTT
TCTGTTCGTCTTGTTAAGCCCGTCATTGGTCTGGAATCCACATATACCCA
CTTTTGATAAATATATTTAAACCATCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCCTCCAGAAATTCTTCGGTGCCGCCGTGGGGAAGGGCCGACAGGG
AGCCAAGACCGAGATCGAGAAACTGAAGCTTACCGAGACCACCTGCACCG
ATGCCATCAAGGAGATGGCGAAAATGTAAGAGAGCCCTCAATTCCTCCCT
CCTTTCCTCCCTCCCCTTCCTCCCTCCCTTTCCCCCTCCTCCTCACCATC
ATCGTACTGGCCTCGCCGAGCCCGTCCTTTTGACACGCATATATATCCAT
TCTTGCCCCTCCCTCCCTTCCTCCCCCCCTCCCTCCAGCCTCCACAAGCT
GCATGACGAGAGCAAGGACAAACCATTCGAGCTGGAGATGGCGTGGGTCA
CCGAGGCCAACGGATTTAAGGCCCAAACCGTCCCCCGCGACGTTGTGTAA
GTCCCCTCCTTCCTCCCCTTCCTTCCCTTCCTTTCTCCTTCCCTGCCTTT
TCGGTTGACATATGAATTAAATACGAAGAGAGGCAAGCACGAAGAGTTTC
CAATCGCTCACACCTCTTTCCTTCGACTTTATCCCCCCTCTCCCTCCCCT
CCCGTCACTAGTGCGGCGGCTGAGAAGTGGGCCAAGGAGGCCATCGAGGC
CGAGGATATGGACGAGAGTGATGATGAGGAGGGAGGGGCAGCATAAGGAA
TAAAAGAAAGGAGGAAGGGAAGGAGGGAAAGCTTTTCTATGGAATGGGAA
CAGAGAGGCGGGTGGATGTATTCATGGAGGGGAGGGGAGGGAGGGAGGAG
AACTAAAAGGGGAAGTGTGGGGAAAGGCCAATGAAAGAAAGATTGAAAGA
AACCGGAAAAGGATCTACCCCAGCACCTTATCATCGAAGCGTTGTGTACA
CCGCATCATGT back to topCoding sequence (CDS) from alignment at chr28:565566..570226- >NO28G01780.2 ID=NO28G01780.2|Name=NO28G01780.2|organism=Nannochloropsis oceanica|type=CDS|length=1374bp|location=Sequence derived from alignment at chr28:565566..570226- (Nannochloropsis oceanica) ATGAGTACAAGCCATGCTGTTCCAGACTTCCTGCTGGAGGAGCTGGGAAG TCAGGCGCCCGGCTTGGAGAGCGACGGAAGGCCGGAGCTCAACGACGACG TGGACCGACTCACGCGATGGTGGCTGCAGGAGGAGGCAGCCCCAGAATTA CTGCCTTTCCAGACGGAGACCGTGCAAGACTTGCATGCCCTAGTGGAGCA GCAGCAGGGTTTCGTGGACGAGTCGCGCAACACAGTGGAAGAGGCCAGCT CTGCCCTACTCTATCAGATGGAGATCGACCGGGTTAAGTACGTGCTAGCC CGATACCTCCGAGCTCGTCTTTGCAAACTCGAGAGACACATTTTGCATGT GGCCTTGGACCCAGACATGCGTCAACGCCTCTCTCCGTACGAGTTGCGGT TCGCCGGTCAATACCTGGACCTGGTGGACAAGCACGCCCACGCCATGGTC CTTGACCATATGCCAGAAGGCTTCCAGTCGCTCACACAGGAGGCCCACGG AGAGCGGCCGGTCGATGCGCCGGACCTCGATCGCTTCGTTTTCTGCCGCG TCCGCCAAGATAGCTTCAACGTACAGGTGGACGACTCGGCCGACGCTGGC TCGAACGTGGCGGGCATCCAGGATTTGATGGAAGGAGACGTGCATGTGCT TAAATACAGGGTGCCAACCATGAGTTCAACGGGTGCGGGGTACGATGTCT CGCCCACCACCTTCTCGCCCGACGGCCGCCTCTTCCAAGTGGAGTACGCG AGTAAAGCGGTGGAGAACAGTGGCACGGCCATTGGGCTAAAGTGCAAGGA CGGCATTGTCCTGGCAGTGGAGAATCTGCTCTTGTCTAAGCTCCTGGTGG CCAACTCGAACCGACGCACCTTTGGGGTAGGCCCGCACGTCTCCATCGCC GTGGCTGGCCTCGTTTCAGACGGCCGGCAAGTGGTAAACCGCGCCCGGGA AGAGGCTGAGAACTACAAGGACAACTACGGCAGTGATATCCCCCCTTCAG TCCTGGCCGATCGCCTGGCCCAGTTCGTCCACTTCTTCACCCTCAACTAC TCCCTGCGGCCGTTTGGAGCCTCCGTGCTCATCGCCGGTTATGACGCTTT CATGGAGGCTCTAGAGCTGCACGTCATCGAACCCTCAGGCGTGGCCTACA AATTCTTCGGTGCCGCCGTGGGGAAGGGCCGACAGGGAGCCAAGACCGAG ATCGAGAAACTGAAGCTTACCGAGACCACCTGCACCGATGCCATCAAGGA GATGGCGAAAATCCTCCACAAGCTGCATGACGAGAGCAAGGACAAACCAT TCGAGCTGGAGATGGCGTGGGTCACCGAGGCCAACGGATTTAAGGCCCAA ACCGTCCCCCGCGACGTTGTGTAA back to top
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