NO28G01760, NO28G01760 (gene) Nannochloropsis oceanica

Overview
NameNO28G01760
Unique NameNO28G01760
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1621
Alignment locationchr28:550785..552405 +

Link to JBrowse

Properties
Property NameValue
DescriptionProtein YOP1
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:550785..552405 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004345TB2_DP1_HVA22
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
BLAST of NO28G01760 vs. NCBI_GenBank
Match: XP_004349466.1 (receptor accessory protein 5 [Capsaspora owczarzaki ATCC 30864] >KJE91599.1 receptor accessory protein 5 [Capsaspora owczarzaki ATCC 30864])

HSP 1 Score: 114.0 bits (284), Expect = 4.600e-22
Identity = 59/138 (42.75%), Postives = 84/138 (60.87%), Query Frame = 0
Query:   27 IKSGIQKFSDDLEKVELLRKAEETTKVPKLYLVAATVFLGLSLFMFNAGAQFIVNVVGFVFPAYASFRALEAGDQAESKIWLAYWVVFGGTNLLDFFSEFITYWLPFYYLLKLALTVYLILPQFRGVEHL-KKIIGKF 164
            +K  + K   +L K   + + ++ TKVPK YL      L L       GAQ + N+VGFV+PAYASF+A+E+ ++ +   WL YWVVF   +LL+FFS+ I +WLPFYYL+K    VYL+LP   G   L + +I +F
Sbjct:    5 VKLYLDKLDAELNKYPFMIRLQDQTKVPKAYLAIGGFLLILLSLSAGLGAQLVCNIVGFVYPAYASFKAIESTNKDDDTQWLTYWVVFAFFSLLEFFSDIILHWLPFYYLMKFVFLVYLMLPTLNGAAQLYQNVIRRF 142          
BLAST of NO28G01760 vs. NCBI_GenBank
Match: XP_016611373.1 (hypothetical protein SPPG_02378 [Spizellomyces punctatus DAOM BR117] >KND03334.1 hypothetical protein SPPG_02378 [Spizellomyces punctatus DAOM BR117])

HSP 1 Score: 112.5 bits (280), Expect = 1.300e-21
Identity = 53/126 (42.06%), Postives = 79/126 (62.70%), Query Frame = 0
Query:   31 IQKFSDDLEKVELLRKAEETTKVPKLYLVAATVFLGLSLFMFNAGAQFIVNVVGFVFPAYASFRALEAGDQAESKIWLAYWVVFGGTNLLDFFSEFITYWLPFYYLLKLALTVYLILPQFRGVEHL 157
            +++F  +L K+ +  + E  T  PK Y V         L  FN     + N++GF++PAYASF+A+E+ ++ +   WL YW VFG  N+L+FFS+ + YW+PFYY  K AL +YLILPQF+G + L
Sbjct:    9 LKQFDVELSKIPITLEIERRTGFPKTYAVGGVGVFAALLIFFNIWGSLLTNLLGFLYPAYASFKAIESVNKNDDTQWLIYWTVFGFLNVLEFFSDALLYWIPFYYTFKAALILYLILPQFQGAQFL 134          
BLAST of NO28G01760 vs. NCBI_GenBank
Match: GAY00745.1 (Hypothetical protein PINS_008562 [Pythium insidiosum])

HSP 1 Score: 112.5 bits (280), Expect = 1.300e-21
Identity = 56/138 (40.58%), Postives = 86/138 (62.32%), Query Frame = 0
Query:   31 IQKFSDDLEKVELLRKAEETTKVPKLYLVAATVFLGLSLFMFNAGAQFIVNVVGFVFPAYASFRALEAGDQAESKIWLAYWVVFGGTNLLDFFSEFITYWLPFYYLLKLALTVYLILPQFRGVEHLKKIIGKFGHFVT 169
            + K+S DL+K  +L+KA+E T V KLYLVA    + L   +   GA  I N+VGF +PAYASF+A+E   +A+   WL YWVV+   ++++ F++F+ YW+PFYY  KL   ++L +P  +G   L      + HF++
Sbjct:    8 VDKWSKDLDKYPVLQKAQEATGVDKLYLVAGASSVLLLFLLVGFGAGLICNIVGFAYPAYASFKAVETESKADDVQWLTYWVVYACFSVVEVFADFLLYWIPFYYAFKLGFLLWLFMPSTQGASFL------YNHFLS 139          
BLAST of NO28G01760 vs. NCBI_GenBank
Match: SAM01486.1 (hypothetical protein [Absidia glauca])

HSP 1 Score: 111.7 bits (278), Expect = 2.300e-21
Identity = 56/154 (36.36%), Postives = 89/154 (57.79%), Query Frame = 0
Query:    3 ANSAIPTEDIKAKAQEIMRKGEVLIKSGIQKFSDDLEKVELLRKAEETTKVPKLYLVAATVFLGLSLFMFNAGAQFIVNVVGFVFPAYASFRALEAGDQAESKIWLAYWVVFGGTNLLDFFSEFITYWLPFYYLLKLALTVYLILPQFRGVEHL 157
            AN+    + I+ KA+++++K +V           +L + +   +AE  T VPK YL +    + L +  FN   Q + N + +++PAYASF+A+E+    + K WL YW V G   ++++FS+ + +W PFYYL K  L +YL LPQFRG E L
Sbjct:   10 ANNNYSAQGIQDKARQLLKKVDV-----------ELSQFKYANEAERLTGVPKSYLASGVAGVVLLMIFFNLAGQLLTNTISWIYPAYASFKAIESPSTDDDKQWLTYWTVIGFVQMIEYFSDILLFWFPFYYLFKTLLVLYLTLPQFRGAEVL 152          
BLAST of NO28G01760 vs. NCBI_GenBank
Match: ORX88331.1 (hypothetical protein K493DRAFT_290723 [Basidiobolus meristosporus CBS 931.73])

HSP 1 Score: 111.7 bits (278), Expect = 2.300e-21
Identity = 51/122 (41.80%), Postives = 79/122 (64.75%), Query Frame = 0
Query:   37 DLEKVELLRKAEETTKVPKLYLVAATVFLGLSLFMFNAGAQFIVNVVGFVFPAYASFRALEAGDQAESKIWLAYWVVFGGTNLLDFFSEFITYWLPFYYLLKLALTVYLILPQFRGVEHLKK 159
            +L K  + +K E+ T + K Y VA   F+ +     N  A  + NVVG+V+PAYASF+A+E+ D+ +   WL YW V+G  N+ ++F++ + YW PFYYL KLA  ++L+LPQF G +++ K
Sbjct:   14 ELSKYPIFQKVEQKTGIHKTYAVAGIGFVFVLFVFLNIAASLLTNVVGWVYPAYASFKAIESRDKEDDTQWLTYWTVYGFVNIAEYFADALLYWFPFYYLFKLAALLWLLLPQFMGAQYVYK 135          
BLAST of NO28G01760 vs. NCBI_GenBank
Match: ETK75762.1 (hypothetical protein L915_17685 [Phytophthora parasitica] >ETL29204.1 hypothetical protein L916_17574 [Phytophthora parasitica] >ETL82409.1 hypothetical protein L917_17420 [Phytophthora parasitica] >ETM35645.1 hypothetical protein L914_17480 [Phytophthora parasitica] >ETP05343.1 hypothetical protein F441_18032 [Phytophthora parasitica CJ01A1] >KUF99880.1 hypothetical protein AM588_10009756 [Phytophthora nicotianae])

HSP 1 Score: 111.3 bits (277), Expect = 3.000e-21
Identity = 55/126 (43.65%), Postives = 80/126 (63.49%), Query Frame = 0
Query:   31 IQKFSDDLEKVELLRKAEETTKVPKLYLVAATVFLGLSLFMFNAGAQFIVNVVGFVFPAYASFRALEAGDQAESKIWLAYWVVFGGTNLLDFFSEFITYWLPFYYLLKLALTVYLILPQFRGVEHL 157
            + K++ DLEK  +L++A++ T V KLYLVA    L L   +   GA  I N+VGFV+PAY SF+A+E  D+ +   WL YWVV+   NL++ F++F+ YW+PFYY  KL   ++L +P   G   L
Sbjct:    8 MDKWAKDLEKFPVLQQAQDATGVEKLYLVAGGAALVLLXXLVGFGAGLICNLVGFVYPAYCSFKAIETDDKKDDVQWLTYWVVYACFNLVEIFADFLLYWIPFYYAFKLGFLLWLFMPSTLGASFL 133          
BLAST of NO28G01760 vs. NCBI_GenBank
Match: ETP33455.1 (hypothetical protein F442_18010 [Phytophthora parasitica P10297])

HSP 1 Score: 111.3 bits (277), Expect = 3.000e-21
Identity = 60/150 (40.00%), Postives = 89/150 (59.33%), Query Frame = 0
Query:    7 IPTEDIKAKAQEIMRKGEVLIKSGIQKFSDDLEKVELLRKAEETTKVPKLYLVAATVFLGLSLFMFNAGAQFIVNVVGFVFPAYASFRALEAGDQAESKIWLAYWVVFGGTNLLDFFSEFITYWLPFYYLLKLALTVYLILPQFRGVEHL 157
            +P    +   +E M K +V     + K++ DLEK  +L++A++ T V KLYLVA    L L   +   GA  I N+VGFV+PAY SF+A+E  D+ +   WL YWVV+   NL++ F++F+ YW+PFYY  KL   ++L +P   G   L
Sbjct:  646 LPNPSEEPGEEEGMEKVQVY----MDKWAKDLEKFPVLQQAQDATGVEKLYLVAGGAALVLLXXLVGFGAGLICNLVGFVYPAYCSFKAIETDDKKDDVQWLTYWVVYACFNLVEIFADFLLYWIPFYYAFKLGFLLWLFMPSTLGASFL 791          
BLAST of NO28G01760 vs. NCBI_GenBank
Match: KUF79620.1 (Receptor expression-enhancing protein 5 [Phytophthora nicotianae])

HSP 1 Score: 111.3 bits (277), Expect = 3.000e-21
Identity = 60/150 (40.00%), Postives = 89/150 (59.33%), Query Frame = 0
Query:    7 IPTEDIKAKAQEIMRKGEVLIKSGIQKFSDDLEKVELLRKAEETTKVPKLYLVAATVFLGLSLFMFNAGAQFIVNVVGFVFPAYASFRALEAGDQAESKIWLAYWVVFGGTNLLDFFSEFITYWLPFYYLLKLALTVYLILPQFRGVEHL 157
            +P    +   +E M K +V     + K++ DLEK  +L++A++ T V KLYLVA    L L   +   GA  I N+VGFV+PAY SF+A+E  D+ +   WL YWVV+   NL++ F++F+ YW+PFYY  KL   ++L +P   G   L
Sbjct:   68 LPNPSEEPGEEEGMEKVQVY----MDKWAKDLEKFPVLQQAQDATGVEKLYLVAGGAALVLLXXLVGFGAGLICNLVGFVYPAYCSFKAIETDDKKDDVQWLTYWVVYACFNLVEIFADFLLYWIPFYYAFKLGFLLWLFMPSTLGASFL 213          
BLAST of NO28G01760 vs. NCBI_GenBank
Match: ORY05602.1 (hypothetical protein K493DRAFT_274828 [Basidiobolus meristosporus CBS 931.73])

HSP 1 Score: 111.3 bits (277), Expect = 3.000e-21
Identity = 51/122 (41.80%), Postives = 79/122 (64.75%), Query Frame = 0
Query:   37 DLEKVELLRKAEETTKVPKLYLVAATVFLGLSLFMFNAGAQFIVNVVGFVFPAYASFRALEAGDQAESKIWLAYWVVFGGTNLLDFFSEFITYWLPFYYLLKLALTVYLILPQFRGVEHLKK 159
            +L K  +  + E+ T VPK Y VA    L +    FN     + N+VG+V+PAYASF+A+E+  + +   WL YW V+G  N++++FS+ + YW+PFYYL KL   ++L+LPQF+G E++ K
Sbjct:   14 ELSKYPIFHQVEQKTGVPKTYAVAGFGGLFVLFIFFNIAGSLLTNLVGWVYPAYASFKAIESHTKEDDTQWLTYWTVYGFVNVVEYFSDALLYWIPFYYLFKLGALLWLLLPQFKGAEYVYK 135          
BLAST of NO28G01760 vs. NCBI_GenBank
Match: EIE79145.1 (hypothetical protein RO3G_03850 [Rhizopus delemar RA 99-880])

HSP 1 Score: 110.9 bits (276), Expect = 3.900e-21
Identity = 56/156 (35.90%), Postives = 84/156 (53.85%), Query Frame = 0
Query:    1 MAANSAIPTEDIKAKAQEIMRKGEVLIKSGIQKFSDDLEKVELLRKAEETTKVPKLYLVAATVFLGLSLFMFNAGAQFIVNVVGFVFPAYASFRALEAGDQAESKIWLAYWVVFGGTNLLDFFSEFITYWLPFYYLLKLALTVYLILPQFRGVEHL 157
            M+A+S    E I+ K           +K  + +   +L K +   + E  T VPK Y+      +G  +  FN   Q + N + +++PAYASF+A+E+  + + K WL YW V G    +++FS+ + YW PFYYL K  L +YL LPQFRG E L
Sbjct:    1 MSASSPYSAEKIQLK-----------LKETVNRLDGELGKFKYANEFERRTGVPKSYVALGVAGIGFVMIFFNIAGQLLTNTISWIYPAYASFKAIESPSKEDDKQWLTYWTVIGFVQTVEYFSDILLYWFPFYYLFKTLLVLYLALPQFRGAEML 145          
The following BLAST results are available for this feature:
BLAST of NO28G01760 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_004349466.14.600e-2242.75receptor accessory protein 5 [Capsaspora owczarzak... [more]
XP_016611373.11.300e-2142.06hypothetical protein SPPG_02378 [Spizellomyces pun... [more]
GAY00745.11.300e-2140.58Hypothetical protein PINS_008562 [Pythium insidios... [more]
SAM01486.12.300e-2136.36hypothetical protein [Absidia glauca][more]
ORX88331.12.300e-2141.80hypothetical protein K493DRAFT_290723 [Basidiobolu... [more]
ETK75762.13.000e-2143.65hypothetical protein L915_17685 [Phytophthora para... [more]
ETP33455.13.000e-2140.00hypothetical protein F442_18010 [Phytophthora para... [more]
KUF79620.13.000e-2140.00Receptor expression-enhancing protein 5 [Phytophth... [more]
ORY05602.13.000e-2141.80hypothetical protein K493DRAFT_274828 [Basidiobolu... [more]
EIE79145.13.900e-2135.90hypothetical protein RO3G_03850 [Rhizopus delemar ... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR087ncniR087Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR101ngnoR101Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO28G01760.1NO28G01760.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO28G01760.1NO28G01760.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO28G01760 ID=NO28G01760|Name=NO28G01760|organism=Nannochloropsis oceanica|type=gene|length=1621bp
ATGGCCGCAAATTCCGCAATCCCGACCGAAGACATCAAAGCCAAGgtgag
tgagtgaagagagaatggaggaaggagggacggaggggagggagcgagca
gcaaccagcagaagcagcacacttatgcatgcattcgtacataacttccg
ctgctgccctccgaatcactccctcctgtttacctcgctttctttatcat
ctcatgttgttaccccctcgctttactcggcttcctttgtcacgctaccc
aagcaatgtcttacccgccctccctccttcccttccaaacgcgatctctc
cagcctccttcctcccattgcctcgatgtctctcctactctcgctcttac
ccactctcctttgttccactctcctatcagGCCCAAGAAATCATGCGAAA
AGGCGAGGTCTTAATCAAGAGCGGCATCCAGAAGTTCAGCGACGATTTGG
AGAAAGTGGAGCTCCTCCGGgtagggagggagggaaggagggaaggaggg
aaaacacacgttttcagaagacaacgaaatgaatggctggataaagtgaa
aataaccacctgcctgtagggagggaaggagggagggattaccactgaac
tcgctgacgcctccctccctccctccctccctcccccccccccctttcct
gcagAAAGCAGAGGAGACGACCAAAGTGCCCAAGCTGTACCTGGTGGCTG
CCACCGTCTTCCTGGGCCTCTCCCTCTTCATGTTCAACGCCGGAGCGCAA
TTCATCGTgtacgtcgtcccctccctccctccctcccccccttcctccac
cccttgcaaagatccgatccgatcttcccgacacacctacctccctccct
ccctccctctctccctccatccctctttccctccttatagGAACGTGGTG
GGTTTCGTCTTCCCCGCTTATGCGTCTTTTAGAGCCCTCGAAGCAGGCGA
CCAGGCAGAATCCAAAATCTGgtgagggagggagggagagagggaggaat
aggtttgaagatcattaagaggaggcggttggaatagcgtctgacggatg
aggggagagatggagggagggagggaggtagggacgggtgtgaggaaacc
gaagtagcctccccatcgcgtgtgcgcctctccaagcccgtcagctgact
cccacatatctccctcgctttcttccaatccgtcgctctctgatgcgtcc
ctcctccctctccgccctccctctctccctccccccctccctcagGCTGG
CCTATTGGGTTGTGTTCGGGGGGACTAACCTCCTGGACTTCTTCTCGGAG
TTTATCACCTACTGGCTGCCCTTCTACTACTTGCTCAAgtaaggagggag
ggagggagggagggagggagggagggagggctctgtgacccttccatcgt
gtccgcctcgttgagtccgtcatgccgaagtgcattcctcatccccgacc
tacatcgcacttatatgtcttgtggcccatgcctccctccctctctccct
ccctcgcgccctcagGCTCGCCCTGACGGTGTACCTGATCCTCCCTCAAT
TCCGCGGTGTGGAGCATCTGAAGAAAATCATCGGCAAATTTGGCCATTTC
GTGACCAGCAAATTCGAGTAG
back to top

protein sequence of NO28G01760.1

>NO28G01760.1-protein ID=NO28G01760.1-protein|Name=NO28G01760.1|organism=Nannochloropsis oceanica|type=polypeptide|length=173bp
MAANSAIPTEDIKAKAQEIMRKGEVLIKSGIQKFSDDLEKVELLRKAEET
TKVPKLYLVAATVFLGLSLFMFNAGAQFIVNVVGFVFPAYASFRALEAGD
QAESKIWLAYWVVFGGTNLLDFFSEFITYWLPFYYLLKLALTVYLILPQF
RGVEHLKKIIGKFGHFVTSKFE*
back to top
Synonyms
Publications