NO28G01760.1, NO28G01760.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO28G01760.1
Unique NameNO28G01760.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length519
Alignment locationchr28:550785..552405 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:550785..552405 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO28G01760.1 vs.
Match: XP_009525162.1 (hypothetical protein PHYSODRAFT_492117 [Phytophthora sojae]; EGZ22445.1 hypothetical protein PHYSODRAFT_492117 [Phytophthora sojae])

HSP 1 Score: 114.8 bits (286), Expect = 2.700e-22
Identity = 57/126 (45.24%), Postives = 81/126 (64.29%), Query Frame = 0 
Query:   31 IQKFSDDLEKVELLRKAEETTKVPKLYLVAATVFLGLSLFMFNAGAQFIVNVVGFVFPAYASFRALEAGDQAESKIWLAYWVVFGGTNLLDFFSEFITYWLPFYYLLKLALTVYLILPQFRGVEHL 157
            + K++ DLEK  +L+ A+E T V KLYLVA    L L L +   GA  I N+VGFV+PAYASF+A+E  D+ +   WL YWVV+   N+++ F++F+ YW+PFYY  KL   ++L +P   G   L
Sbjct:    8 MDKWAKDLEKFPVLQSAQEATGVEKLYLVAGGAALLLLLLLVGFGAGLICNLVGFVYPAYASFKAIETDDKKDDVQWLTYWVVYACFNIVEIFADFLLYWIPFYYAFKLGFLLWLFMPSTLGASFL 133
The following BLAST results are available for this feature:
BLAST of NO28G01760.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_009525162.12.700e-2245.24hypothetical protein PHYSODRAFT_492117 [Phytophtho... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO28G01760NO28G01760Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO28G01760.1NO28G01760.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO28G01760.1.cds1NO28G01760.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01760.1.cds2NO28G01760.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01760.1.cds3NO28G01760.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01760.1.cds4NO28G01760.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01760.1.cds5NO28G01760.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01760.1.cds6NO28G01760.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO28G01760.1 ID=NO28G01760.1|Name=NO28G01760.1|organism=Nannochloropsis oceanica|type=mRNA|length=519bp
ATGGCCGCAAATTCCGCAATCCCGACCGAAGACATCAAAGCCAAGGCCCA
AGAAATCATGCGAAAAGGCGAGGTCTTAATCAAGAGCGGCATCCAGAAGT
TCAGCGACGATTTGGAGAAAGTGGAGCTCCTCCGGAAAGCAGAGGAGACG
ACCAAAGTGCCCAAGCTGTACCTGGTGGCTGCCACCGTCTTCCTGGGCCT
CTCCCTCTTCATGTTCAACGCCGGAGCGCAATTCATCGTGAACGTGGTGG
GTTTCGTCTTCCCCGCTTATGCGTCTTTTAGAGCCCTCGAAGCAGGCGAC
CAGGCAGAATCCAAAATCTGGCTGGCCTATTGGGTTGTGTTCGGGGGGAC
TAACCTCCTGGACTTCTTCTCGGAGTTTATCACCTACTGGCTGCCCTTCT
ACTACTTGCTCAAGCTCGCCCTGACGGTGTACCTGATCCTCCCTCAATTC
CGCGGTGTGGAGCATCTGAAGAAAATCATCGGCAAATTTGGCCATTTCGT
GACCAGCAAATTCGAGTAG
back to top

protein sequence of NO28G01760.1

>NO28G01760.1-protein ID=NO28G01760.1-protein|Name=NO28G01760.1|organism=Nannochloropsis oceanica|type=polypeptide|length=173bp
MAANSAIPTEDIKAKAQEIMRKGEVLIKSGIQKFSDDLEKVELLRKAEET
TKVPKLYLVAATVFLGLSLFMFNAGAQFIVNVVGFVFPAYASFRALEAGD
QAESKIWLAYWVVFGGTNLLDFFSEFITYWLPFYYLLKLALTVYLILPQF
RGVEHLKKIIGKFGHFVTSKFE*
back to top

mRNA from alignment at chr28:550785..552405+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO28G01760.1 ID=NO28G01760.1|Name=NO28G01760.1|organism=Nannochloropsis oceanica|type=mRNA|length=1621bp|location=Sequence derived from alignment at chr28:550785..552405+ (Nannochloropsis oceanica)
ATGGCCGCAAATTCCGCAATCCCGACCGAAGACATCAAAGCCAAGGTGAG
TGAGTGAAGAGAGAATGGAGGAAGGAGGGACGGAGGGGAGGGAGCGAGCA
GCAACCAGCAGAAGCAGCACACTTATGCATGCATTCGTACATAACTTCCG
CTGCTGCCCTCCGAATCACTCCCTCCTGTTTACCTCGCTTTCTTTATCAT
CTCATGTTGTTACCCCCTCGCTTTACTCGGCTTCCTTTGTCACGCTACCC
AAGCAATGTCTTACCCGCCCTCCCTCCTTCCCTTCCAAACGCGATCTCTC
CAGCCTCCTTCCTCCCATTGCCTCGATGTCTCTCCTACTCTCGCTCTTAC
CCACTCTCCTTTGTTCCACTCTCCTATCAGGCCCAAGAAATCATGCGAAA
AGGCGAGGTCTTAATCAAGAGCGGCATCCAGAAGTTCAGCGACGATTTGG
AGAAAGTGGAGCTCCTCCGGGTAGGGAGGGAGGGAAGGAGGGAAGGAGGG
AAAACACACGTTTTCAGAAGACAACGAAATGAATGGCTGGATAAAGTGAA
AATAACCACCTGCCTGTAGGGAGGGAAGGAGGGAGGGATTACCACTGAAC
TCGCTGACGCCTCCCTCCCTCCCTCCCTCCCTCCCCCCCCCCCCTTTCCT
GCAGAAAGCAGAGGAGACGACCAAAGTGCCCAAGCTGTACCTGGTGGCTG
CCACCGTCTTCCTGGGCCTCTCCCTCTTCATGTTCAACGCCGGAGCGCAA
TTCATCGTGTACGTCGTCCCCTCCCTCCCTCCCTCCCCCCCTTCCTCCAC
CCCTTGCAAAGATCCGATCCGATCTTCCCGACACACCTACCTCCCTCCCT
CCCTCCCTCTCTCCCTCCATCCCTCTTTCCCTCCTTATAGGAACGTGGTG
GGTTTCGTCTTCCCCGCTTATGCGTCTTTTAGAGCCCTCGAAGCAGGCGA
CCAGGCAGAATCCAAAATCTGGTGAGGGAGGGAGGGAGAGAGGGAGGAAT
AGGTTTGAAGATCATTAAGAGGAGGCGGTTGGAATAGCGTCTGACGGATG
AGGGGAGAGATGGAGGGAGGGAGGGAGGTAGGGACGGGTGTGAGGAAACC
GAAGTAGCCTCCCCATCGCGTGTGCGCCTCTCCAAGCCCGTCAGCTGACT
CCCACATATCTCCCTCGCTTTCTTCCAATCCGTCGCTCTCTGATGCGTCC
CTCCTCCCTCTCCGCCCTCCCTCTCTCCCTCCCCCCCTCCCTCAGGCTGG
CCTATTGGGTTGTGTTCGGGGGGACTAACCTCCTGGACTTCTTCTCGGAG
TTTATCACCTACTGGCTGCCCTTCTACTACTTGCTCAAGTAAGGAGGGAG
GGAGGGAGGGAGGGAGGGAGGGAGGGAGGGCTCTGTGACCCTTCCATCGT
GTCCGCCTCGTTGAGTCCGTCATGCCGAAGTGCATTCCTCATCCCCGACC
TACATCGCACTTATATGTCTTGTGGCCCATGCCTCCCTCCCTCTCTCCCT
CCCTCGCGCCCTCAGGCTCGCCCTGACGGTGTACCTGATCCTCCCTCAAT
TCCGCGGTGTGGAGCATCTGAAGAAAATCATCGGCAAATTTGGCCATTTC
GTGACCAGCAAATTCGAGTAG
back to top

Coding sequence (CDS) from alignment at chr28:550785..552405+

>NO28G01760.1 ID=NO28G01760.1|Name=NO28G01760.1|organism=Nannochloropsis oceanica|type=CDS|length=519bp|location=Sequence derived from alignment at chr28:550785..552405+ (Nannochloropsis oceanica)
ATGGCCGCAAATTCCGCAATCCCGACCGAAGACATCAAAGCCAAGGCCCA
AGAAATCATGCGAAAAGGCGAGGTCTTAATCAAGAGCGGCATCCAGAAGT
TCAGCGACGATTTGGAGAAAGTGGAGCTCCTCCGGAAAGCAGAGGAGACG
ACCAAAGTGCCCAAGCTGTACCTGGTGGCTGCCACCGTCTTCCTGGGCCT
CTCCCTCTTCATGTTCAACGCCGGAGCGCAATTCATCGTGAACGTGGTGG
GTTTCGTCTTCCCCGCTTATGCGTCTTTTAGAGCCCTCGAAGCAGGCGAC
CAGGCAGAATCCAAAATCTGGCTGGCCTATTGGGTTGTGTTCGGGGGGAC
TAACCTCCTGGACTTCTTCTCGGAGTTTATCACCTACTGGCTGCCCTTCT
ACTACTTGCTCAAGCTCGCCCTGACGGTGTACCTGATCCTCCCTCAATTC
CGCGGTGTGGAGCATCTGAAGAAAATCATCGGCAAATTTGGCCATTTCGT
GACCAGCAAATTCGAGTAG
back to top
Synonyms
Publications