NO28G01740, NO28G01740 (gene) Nannochloropsis oceanica

Overview
NameNO28G01740
Unique NameNO28G01740
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2177
Alignment locationchr28:545102..547278 -

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Properties
Property NameValue
DescriptionPeroxiredoxin 5, atypical 2-Cys peroxiredoxin
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:545102..547278 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0045454cell redox homeostasis
Vocabulary: Molecular Function
TermDefinition
GO:0016491oxidoreductase activity
Vocabulary: INTERPRO
TermDefinition
IPR036249Thioredoxin-like_sf
IPR013766Thioredoxin_domain
IPR037944PRX5-like
IPR013740Redoxin
Homology
BLAST of NO28G01740 vs. NCBI_GenBank
Match: XP_005852718.1 (peroxiredoxin 5, atypical 2-Cys peroxiredoxin [Nannochloropsis gaditana CCMP526] >EKU23114.1 peroxiredoxin 5, atypical 2-Cys peroxiredoxin [Nannochloropsis gaditana CCMP526] >EWM26023.1 peroxiredoxin-2e- chloroplastic [Nannochloropsis gaditana])

HSP 1 Score: 168.3 bits (425), Expect = 2.400e-38
Identity = 88/157 (56.05%), Postives = 104/157 (66.24%), Query Frame = 0
Query:   48 GSKLPL-TTTFQHLADGKPTDVPALELFAGKKIVLVGVPGALTPTCSNTHVPGYIAKAADFKAKGVDDIIVLAVNDCFAMRAWEKTFET-DKVKFYADGGASFTKAAGLEFDTGDFGGLRMQRMSALVEDGVVKKIHLEGGGGLSS-SAADVLLGEL 202
            G  LPL   TF+ L DGK TD+   +LF GKK+VL GVPGA TPTC+NTH P Y+A    FKAKGVD I  +A NDCF   AW K+ +  DKV   ADG   F K  GL  +TG FGGLR+ R SALVEDG VKK+HLE GGG +  S A+ +L +L
Sbjct:    7 GQTLPLEKITFKVLKDGKATDLTGTDLFKGKKVVLFGVPGAFTPTCTNTHAPEYLAMYESFKAKGVDAIYCIASNDCFVTSAWAKSLDAGDKVSILADGDCGFAKLVGLTVETGGFGGLRLSRFSALVEDGSVKKLHLEEGGGYTGVSGAEQMLKDL 163          
BLAST of NO28G01740 vs. NCBI_GenBank
Match: XP_014160806.1 (hypothetical protein SARC_00949 [Sphaeroforma arctica JP610] >KNC86904.1 hypothetical protein SARC_00949 [Sphaeroforma arctica JP610])

HSP 1 Score: 166.8 bits (421), Expect = 7.000e-38
Identity = 86/158 (54.43%), Postives = 108/158 (68.35%), Query Frame = 0
Query:   45 IDVGSKLPLTTTFQHLADGKPTDVPALELFAGKKIVLVGVPGALTPTCSNTHVPGYIAKAADFKAKGVDDIIVLAVNDCFAMRAWEKTF-ETDKVKFYADGGASFTKAAGLEFDTGDFGGLRMQRMSALVEDGVVKKIHLEGGGGLSSSAADVLLGEL 202
            + VG K+P   TF+ + DG PTDVP  E+F GKK+V++GVPGA TPTCSN+H+PGYI K A+ K KGVD II L+VNDCF M AW K    T KV  YADGGA++ KAA L  D GDFGG R QR S +VE+G +K +++E       S A  +L +L
Sbjct:   22 VKVGDKIP-AGTFKIIRDGAPTDVPTSEVFDGKKVVVLGVPGAFTPTCSNSHLPGYIEKDAEIKNKGVDSIICLSVNDCFVMDAWSKDVGATGKVDLYADGGATWHKAADLAQDLGDFGGPRAQRYSMVVENGEIKSLNVEPAAADQCSFAPNILKQL 178          
BLAST of NO28G01740 vs. NCBI_GenBank
Match: CAQ52405.1 (peroxyredoxin [Laminaria digitata])

HSP 1 Score: 164.1 bits (414), Expect = 4.600e-37
Identity = 83/158 (52.53%), Postives = 106/158 (67.09%), Query Frame = 0
Query:   43 MTIDVGSKLPLTTTFQHLADGKPTDVPALELFAGKKIVLVGVPGALTPTCSNTHVPGYIAKAADFKAKGVDDIIVLAVNDCFAMRAWEKTFE-TDKVKFYADGGASFTKAAGLEFDTGDFGGLRMQRMSALVEDGVVKKIHLEGGGGLS--SSAADVL 198
            M I  G K P  T+FQ L DG P DVPA ++FAGKK+V+ GVPGA TPTCS+ H+P +IA A +FKAKGVD +  L+VND F M  W K+ +  DKV   ADGG  F + +GL   TG FGG R+QR++ +V DG ++K+ LE G G +  SS A VL
Sbjct:    1 MAIKEGDKFPAGTSFQILGDGGPADVPAADVFAGKKVVICGVPGAFTPTCSDDHLPSFIALADEFKAKGVDTVACLSVNDAFVMSRWIKSLDAADKVTMLADGGGVFAEESGLCVKTGKFGGTRLQRLAMIVNDGTIEKLFLEDGTGYTDLSSGAGVL 158          
BLAST of NO28G01740 vs. NCBI_GenBank
Match: WP_035598756.1 (peroxiredoxin [Hyphomonas polymorpha] >KCZ98244.1 anti-oxidant AhpCTSA family protein [Hyphomonas polymorpha PS728])

HSP 1 Score: 158.3 bits (399), Expect = 2.500e-35
Identity = 84/161 (52.17%), Postives = 102/161 (63.35%), Query Frame = 0
Query:   43 MTIDVGSKLPLTTTFQHLADGKPTDVPALELFAGKKIVLVGVPGALTPTCSNTHVPGYIAKAADFKAKGVDDIIVLAVNDCFAMRAWEKTFETD-KVKFYADGGASFTKAAGLEFDTGDFG-GLRMQRMSALVEDGVVKKIHLEGGGGLSSSAADVLLGEL 202
            M I VG KLP  T  +   DG P  V   E+F GK + L  VPGA TPTCS  H+PGY+ KA DFK KGVDDI+  +VND F M AW K+   D KV+  ADG  +F +A GLE D   FG G R QR S LV+DGVV ++++E GG    S+AD LLG+L
Sbjct:    1 MAIKVGDKLPEATFMEMTVDG-PKPVTTAEVFGGKTVALFAVPGAYTPTCSARHLPGYVDKAGDFKTKGVDDIVCTSVNDVFVMGAWGKSSHADEKVRMLADGNGAFAQALGLELDASGFGMGKRSQRYSMLVKDGVVAELNVEAGGEFKVSSADYLLGQL 160          
BLAST of NO28G01740 vs. NCBI_GenBank
Match: WP_055778337.1 (peroxiredoxin [Sphingomonas sp. Leaf357] >KQS04493.1 alkyl hydroperoxide reductase [Sphingomonas sp. Leaf357])

HSP 1 Score: 156.4 bits (394), Expect = 9.500e-35
Identity = 79/160 (49.38%), Postives = 105/160 (65.62%), Query Frame = 0
Query:   43 MTIDVGSKLPLTTTFQHLADGKPTDVPALELFAGKKIVLVGVPGALTPTCSNTHVPGYIAKAADFKAKGVDDIIVLAVNDCFAMRAWEKTFETDKVKFYADGGASFTKAAGLEFDTGDFG-GLRMQRMSALVEDGVVKKIHLEGGGGLSSSAADVLLGEL 202
            MTI VG K+P +TT   + +  P  V + + FAG+K+ LV VPGA TPTCS  H+PG++ KA++ KAKGVD+I   +VND F M AW K  +  ++   ADG A F KA GL FD   FG G R QR S +V DGVV+++H+E  G  + S+A+ LLGEL
Sbjct:    1 MTIGVGDKIP-STTITKVTESGPEQVSSEDYFAGRKVALVAVPGAFTPTCSARHLPGFVDKASELKAKGVDEIAFTSVNDAFVMGAWGKASDAGEITMLADGNADFAKAVGLTFDGSKFGMGERSQRYSMIVNDGVVEQLHVEAPGEFNVSSAEYLLGEL 159          
BLAST of NO28G01740 vs. NCBI_GenBank
Match: WP_105934226.1 (peroxiredoxin [Alteromonas sp. 190] >OUY03315.1 peroxiredoxin [Alteromonadaceae bacterium TMED7] >PRO73978.1 peroxiredoxin [Alteromonas sp. 190])

HSP 1 Score: 156.4 bits (394), Expect = 9.500e-35
Identity = 81/157 (51.59%), Postives = 102/157 (64.97%), Query Frame = 0
Query:   45 IDVGSKLPLTTTFQHLADGKPTDVPALELFAGKKIVLVGVPGALTPTCSNTHVPGYIAKAADFKAKGVDDIIVLAVNDCFAMRAWEKTFETDKVKFYADGGASFTKAAGLEFDTGDFGGLRMQRMSALVEDGVVKKIHLEGGGGLSSSAADVLLGEL 202
            IDVGS LP   TF  + DGK T     ELF+GK++VL  VPGA TPTCS  H+PGY+A A   KAKGVD II L+VND + M AW K+   +++   ADG A FTK+ GL+ +T DFGG+R  R S LVEDG V K+++E  G    S A+ +L  L
Sbjct:    2 IDVGSTLP-EVTFGLMKDGKMTSPHTNELFSGKRVVLFAVPGAFTPTCSEAHLPGYVALADKIKAKGVDSIICLSVNDAYVMNAWGKSANANEILMVADGNAFFTKSIGLDMNTSDFGGIRSVRYSMLVEDGEVVKLNVEDPGRFEVSDAESMLKSL 157          
BLAST of NO28G01740 vs. NCBI_GenBank
Match: OYW42428.1 (peroxiredoxin [Rhodobacterales bacterium 12-64-8])

HSP 1 Score: 156.4 bits (394), Expect = 9.500e-35
Identity = 83/161 (51.55%), Postives = 107/161 (66.46%), Query Frame = 0
Query:   43 MTIDVGSKLPLTTTFQHLADGKPTDVPALELFAGKKIVLVGVPGALTPTCSNTHVPGYIAKAADFKAKGVDDIIVLAVNDCFAMRAWEKTFET-DKVKFYADGGASFTKAAGLEFDTGDFG-GLRMQRMSALVEDGVVKKIHLEGGGGLSSSAADVLLGEL 202
            MTI VG KLP   TF  + +GKP+ +   +L AGKK+ L  VPGA TPTCS  H+PGY  KAA+F+AKGVD I  ++VND F M AW K+ +  + V   ADG  +F KA GLE D   FG G R +R S ++EDGVVK++++EG G    SAAD +LG+L
Sbjct:    1 MTIQVGDKLP-EATFTVMKEGKPSPLTIADLTAGKKVALFAVPGAFTPTCSARHLPGYKEKAAEFRAKGVDTIACVSVNDVFVMDAWGKSQQVGEDVVMLADGNGAFAKAVGLEMDGSGFGMGSRSKRYSMIIEDGVVKQLNVEGPGEFKVSAADFMLGQL 160          
BLAST of NO28G01740 vs. NCBI_GenBank
Match: OZA94701.1 (peroxiredoxin [Erythrobacter sp. 34-65-8])

HSP 1 Score: 156.4 bits (394), Expect = 9.500e-35
Identity = 83/160 (51.88%), Postives = 104/160 (65.00%), Query Frame = 0
Query:   43 MTIDVGSKLPLTTTFQHLADGKPTDVPALELFAGKKIVLVGVPGALTPTCSNTHVPGYIAKAADFKAKGVDDIIVLAVNDCFAMRAWEKTFETDKVKFYADGGASFTKAAGLEFDTGDFG-GLRMQRMSALVEDGVVKKIHLEGGGGLSSSAADVLLGEL 202
            MTI VG KLP  T  +   +G P  V + E FAGKK+ L  VPGA TPTCS  H+PGY+ KAA+ KAKGVD+I+  AVND F M AW K   ++ +   ADG A F +A GL  D   FG G R QR S +VEDGVVK++++E  G  S S+A+ LLG+L
Sbjct:    1 MTISVGDKLPDVTLIKATEEG-PQKVQSSEYFAGKKVALFSVPGAFTPTCSARHLPGYVDKAAELKAKGVDEIVATAVNDPFVMGAWNKAAGSEDITMLADGNAEFAEALGLTMDGSGFGLGKRGQRFSMVVEDGVVKELNVEAPGDFSVSSAEHLLGQL 159          
BLAST of NO28G01740 vs. NCBI_GenBank
Match: CBN78919.1 (Peroxyredoxin [Ectocarpus siliculosus])

HSP 1 Score: 155.6 bits (392), Expect = 1.600e-34
Identity = 90/204 (44.12%), Postives = 122/204 (59.80%), Query Frame = 0
Query:    4 LSYAALALAACASQTLA--FVPAGPLSGMASSSKSRLHATK--MTIDVGSKLPLTTTFQHLADGKPTDVPALELFAGKKIVLVGVPGALTPTCSNTHVPGYIAKAADFKAKGVDDIIVLAVNDCFAMRAWEKTFET-DKVKFYADGGASFTKAAGLEFDTGDFGGLRMQRMSALVEDGVVKKIHLEGGGGLSS-SAADVLLGEL 202
            +S  A A+  C +   A  FV A    G  +  +S   A++  M I  G K P+ +TFQ   D  P DVPA E+FAGKK+V+ GVPGA TPTC + H+P +IA A  FK KGVD +  ++VND F M  W K+ +  DKV   ADGGA F + +GL   TG FGG R+QR++ +V DG ++K+ LE G G +  S+ D +L  L
Sbjct:    3 MSVLARAVGGCVALRSAQGFV-ASSAVGRTTGVRSIHQASRLAMAIKEGDKFPMDSTFQIKGDAGPADVPASEIFAGKKVVICGVPGAFTPTCDDNHLPSFIANADKFKEKGVDTVACMSVNDAFVMSRWIKSLDAEDKVTMLADGGAVFAEESGLCVKTGKFGGTRLQRLAMIVNDGTIEKLFLEDGTGYTDVSSGDTVLAAL 205          
BLAST of NO28G01740 vs. NCBI_GenBank
Match: WP_070177488.1 (peroxiredoxin [Alteromonas lipolytica] >OFI33111.1 peroxiredoxin [Alteromonas lipolytica])

HSP 1 Score: 155.6 bits (392), Expect = 1.600e-34
Identity = 79/157 (50.32%), Postives = 101/157 (64.33%), Query Frame = 0
Query:   45 IDVGSKLPLTTTFQHLADGKPTDVPALELFAGKKIVLVGVPGALTPTCSNTHVPGYIAKAADFKAKGVDDIIVLAVNDCFAMRAWEKTFETDKVKFYADGGASFTKAAGLEFDTGDFGGLRMQRMSALVEDGVVKKIHLEGGGGLSSSAADVLLGEL 202
            IDVGS LP   TF  + DGK T     +LF GK++V+  VPGA TPTCS  H+PGY+A A   KAKGVD II L+VND + M AW K+   +++   ADG A FTK+ GL+ +T DFGG+R  R S LVEDG V K+++E  G    S A+ +L  L
Sbjct:    2 IDVGSTLP-EVTFGLMKDGKMTSPHTNDLFGGKRVVVFAVPGAFTPTCSEAHLPGYVALADKIKAKGVDSIICLSVNDAYVMDAWGKSANAEEILMVADGNAFFTKSIGLDMNTSDFGGIRSMRYSMLVEDGEVVKLNVEDPGRFEVSDAETMLNSL 157          
The following BLAST results are available for this feature:
BLAST of NO28G01740 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005852718.12.400e-3856.05peroxiredoxin 5, atypical 2-Cys peroxiredoxin [Nan... [more]
XP_014160806.17.000e-3854.43hypothetical protein SARC_00949 [Sphaeroforma arct... [more]
CAQ52405.14.600e-3752.53peroxyredoxin [Laminaria digitata][more]
WP_035598756.12.500e-3552.17peroxiredoxin [Hyphomonas polymorpha] >KCZ98244.1 ... [more]
WP_055778337.19.500e-3549.38peroxiredoxin [Sphingomonas sp. Leaf357] >KQS04493... [more]
WP_105934226.19.500e-3551.59peroxiredoxin [Alteromonas sp. 190] >OUY03315.1 pe... [more]
OYW42428.19.500e-3551.55peroxiredoxin [Rhodobacterales bacterium 12-64-8][more]
OZA94701.19.500e-3551.88peroxiredoxin [Erythrobacter sp. 34-65-8][more]
CBN78919.11.600e-3444.12Peroxyredoxin [Ectocarpus siliculosus][more]
WP_070177488.11.600e-3450.32peroxiredoxin [Alteromonas lipolytica] >OFI33111.1... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR087ncniR087Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR101ngnoR101Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO28G01740.1NO28G01740.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|612534gene_11131Nannochloropsis oceanica (N. oceanica CCMP1779)gene
prxgene9768Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO28G01740.1NO28G01740.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO28G01740 ID=NO28G01740|Name=NO28G01740|organism=Nannochloropsis oceanica|type=gene|length=2177bp
GTTTCGTCGGTGGGGATGATATGCCCGCTATATCTTTCGTTTTACTTCTC
CATCTATGCCATGCACTCTGATAAGATAGGTAACAGGACACGGGCGATGT
CATGCATTTAATGTACTTGCGACTTGCGGTGAAGATAGATACCAGTCTCC
ATGCCTGCATGTGGCTGTAACGGACATTTAAGGGTCGTCCTCCATCACTC
AGATACACCACGTTGCATAGCACCAACCCAGTCACCTTGTTTCTCTAGTC
CAGAAACCTGTTCTTGCCGGGCGCTAGGTAACTCTGCCTAAGCACAGGAC
CAAGGCACATGCACCCATCAACAGTTGTACTATGTGTCCAGGCACGCAGG
ATCGACCTCCTCTCCTCGCCTACGTCTTCATATTTTGCAATTACATCTCG
CAAAGCTCGCTTTCGTTTTTTCCGGGGCCTCGCCTGCTCCTTCATCCTCG
TCTTTATCTCCCAGTCAGAACACGCCCAAGCTCACTCAAAACTATTTCTC
CACTAACATCTCTCCCTCTCTGTCTTCGTTTGGATTACCTGCTGACACGT
GAATCTCTTCTCATTTACTCTCCAGCACATCATGCACGTACTTTCTTACG
CCGCCTTGGCCTTGGCTGCCTGTGCTTCCCAGACTCTTGCCTTTGTGCCC
GCAGGACCGCTGTCGGGAATGGCTTCGAGCAGCAAGAGgtatgtaaaggg
aaggaggaaggaaggtaggggggtaggaaggtgggaaggggaggggggga
ggttagaggcagatgaaatgaacgagacgtgccgggattttgtgactgag
ttctgaagcaagaaaatgttgtagggtggatgactttccgcgtgcttcta
agcctgcctactcggtgttaggcttacccacccctcctcccgttccctcc
tccctccgtagCCGCCTGCACGCCACCAAGATGACCATCGATGTCGGGAG
CAAGCTGCCCCTCACCACCACCTTCCAGCACCTGGCTGACGGCAAGCCCA
CGgtatgccccttcattcatctctctctcgcttccttactcccccctgcc
tttgcacatacatccgagggaaatctcgcgatcgacgtcatcgcgtatcc
tcgtcaccctccctccctctccccccctttccctcccctgcctccctcac
tcagGATGTGCCCGCATTGGAACTTTTCGCAGGGAAGAAAATTGTGCTGG
TCGGCGTCCCCGGGGCTTTGACTCCCACCTGCTCGgtagggaaggaggct
gacggggaaggacggagggaagggaaggaggatgaggaatgcttgatcca
gaggtttccactgtgatgcccctctcccatcgtacccgtctggccatacc
agtcattctgtcagccatctcctaccactcaggaacaagaagaggaaaaa
ttgttaccttaacatccctccctttcttcccaccctccctccctccctcc
cctccctccctccctccctccctccctccctccctccctccctccctccc
tagAACACCCACGTGCCGGGCTACATCGCCAAGGCCGCCGACTTCAAGGC
CAAGGGCGTGGATGACATCATCGTGCTGGCCGTCAACGATTGCTTCGCCA
TGCGCGCTTGGGAGAAGACGTTCGAGACGGACAAGgtgcgtgcccctccc
tccctccctccctccctccttcccaccttccctccttccccccagcgttt
ggttgccatggcatctgcctcgtcggatccacccttacatttctccagat
gccgtttctcacccctaaaacaaaatatctgacccctttctatccttttc
cccctgctctccctccctccctcccttcctccctccagGTGAAGTTCTAC
GCGGACGGTGGCGCCTCCTTTACCAAGGCTGCGGGCTTGGAGTTTGACAC
GGGCGATTTCGGGGGCCTCCGTATGCAGCGAATGTCAGCTCTGgtacgtc
ctccatcccttcagccctccctttgttccctccttacttactgtcttcat
accgactgacttatcttcccaatgtccttccctccctccctccctccctc
ctcctctcccctcagGTGGAGGACGGCGTGGTGAAGAAGATTCACTTGGA
GGGGGGGGGCGGCCTCTCCTCCTCCGCCGCGGACGTGCTGCTCGGCGAGC
TCTAAGGAGGGAGGGAGGGAGGGAGGG
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protein sequence of NO28G01740.1

>NO28G01740.1-protein ID=NO28G01740.1-protein|Name=NO28G01740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=202bp
MHVLSYAALALAACASQTLAFVPAGPLSGMASSSKSRLHATKMTIDVGSK
LPLTTTFQHLADGKPTDVPALELFAGKKIVLVGVPGALTPTCSNTHVPGY
IAKAADFKAKGVDDIIVLAVNDCFAMRAWEKTFETDKVKFYADGGASFTK
AAGLEFDTGDFGGLRMQRMSALVEDGVVKKIHLEGGGGLSSSAADVLLGE
L*
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Synonyms
Publications