NO28G01740.1, NO28G01740.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO28G01740.1
Unique NameNO28G01740.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1209
Alignment locationchr28:545102..547278 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:545102..547278 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO28G01740.1 vs.
Match: XP_005852718.1 (peroxiredoxin 5, atypical 2-Cys peroxiredoxin [Nannochloropsis gaditana CCMP526]; EKU23114.1 peroxiredoxin 5, atypical 2-Cys peroxiredoxin [Nannochloropsis gaditana CCMP526]; EWM26023.1 peroxiredoxin-2e- chloroplastic [Nannochloropsis gaditana])

HSP 1 Score: 168.3 bits (425), Expect = 2.400e-38
Identity = 88/157 (56.05%), Postives = 104/157 (66.24%), Query Frame = 0 
Query:   48 GSKLPLTT-TFQHLADGKPTDVPALELFAGKKIVLVGVPGALTPTCSNTHVPGYIAKAADFKAKGVDDIIVLAVNDCFAMRAWEKTFET-DKVKFYADGGASFTKAAGLEFDTGDFGGLRMQRMSALVEDGVVKKIHLEGGGGLSS-SAADVLLGEL 202
            G  LPL   TF+ L DGK TD+   +LF GKK+VL GVPGA TPTC+NTH P Y+A    FKAKGVD I  +A NDCF   AW K+ +  DKV   ADG   F K  GL  +TG FGGLR+ R SALVEDG VKK+HLE GGG +  S A+ +L +L
Sbjct:    7 GQTLPLEKITFKVLKDGKATDLTGTDLFKGKKVVLFGVPGAFTPTCTNTHAPEYLAMYESFKAKGVDAIYCIASNDCFVTSAWAKSLDAGDKVSILADGDCGFAKLVGLTVETGGFGGLRLSRFSALVEDGSVKKLHLEEGGGYTGVSGAEQMLKDL 163
The following BLAST results are available for this feature:
BLAST of NO28G01740.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005852718.12.400e-3856.05peroxiredoxin 5, atypical 2-Cys peroxiredoxin [Nan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO28G01740NO28G01740Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO28G01740.1NO28G01740.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO28G01740.1.cds1NO28G01740.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01740.1.cds2NO28G01740.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01740.1.cds3NO28G01740.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01740.1.cds4NO28G01740.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01740.1.cds5NO28G01740.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01740.1.cds6NO28G01740.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO28G01740.1 ID=NO28G01740.1|Name=NO28G01740.1|organism=Nannochloropsis oceanica|type=mRNA|length=1209bp
GTTTCGTCGGTGGGGATGATATGCCCGCTATATCTTTCGTTTTACTTCTC
CATCTATGCCATGCACTCTGATAAGATAGGTAACAGGACACGGGCGATGT
CATGCATTTAATGTACTTGCGACTTGCGGTGAAGATAGATACCAGTCTCC
ATGCCTGCATGTGGCTGTAACGGACATTTAAGGGTCGTCCTCCATCACTC
AGATACACCACGTTGCATAGCACCAACCCAGTCACCTTGTTTCTCTAGTC
CAGAAACCTGTTCTTGCCGGGCGCTAGGTAACTCTGCCTAAGCACAGGAC
CAAGGCACATGCACCCATCAACAGTTGTACTATGTGTCCAGGCACGCAGG
ATCGACCTCCTCTCCTCGCCTACGTCTTCATATTTTGCAATTACATCTCG
CAAAGCTCGCTTTCGTTTTTTCCGGGGCCTCGCCTGCTCCTTCATCCTCG
TCTTTATCTCCCAGTCAGAACACGCCCAAGCTCACTCAAAACTATTTCTC
CACTAACATCTCTCCCTCTCTGTCTTCGTTTGGATTACCTGCTGACACGT
GAATCTCTTCTCATTTACTCTCCAGCACATCATGCACGTACTTTCTTACG
CCGCCTTGGCCTTGGCTGCCTGTGCTTCCCAGACTCTTGCCTTTGTGCCC
GCAGGACCGCTGTCGGGAATGGCTTCGAGCAGCAAGAGCCGCCTGCACGC
CACCAAGATGACCATCGATGTCGGGAGCAAGCTGCCCCTCACCACCACCT
TCCAGCACCTGGCTGACGGCAAGCCCACGGATGTGCCCGCATTGGAACTT
TTCGCAGGGAAGAAAATTGTGCTGGTCGGCGTCCCCGGGGCTTTGACTCC
CACCTGCTCGAACACCCACGTGCCGGGCTACATCGCCAAGGCCGCCGACT
TCAAGGCCAAGGGCGTGGATGACATCATCGTGCTGGCCGTCAACGATTGC
TTCGCCATGCGCGCTTGGGAGAAGACGTTCGAGACGGACAAGGTGAAGTT
CTACGCGGACGGTGGCGCCTCCTTTACCAAGGCTGCGGGCTTGGAGTTTG
ACACGGGCGATTTCGGGGGCCTCCGTATGCAGCGAATGTCAGCTCTGGTG
GAGGACGGCGTGGTGAAGAAGATTCACTTGGAGGGGGGGGGCGGCCTCTC
CTCCTCCGCCGCGGACGTGCTGCTCGGCGAGCTCTAAGGAGGGAGGGAGG
GAGGGAGGG
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protein sequence of NO28G01740.1

>NO28G01740.1-protein ID=NO28G01740.1-protein|Name=NO28G01740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=202bp
MHVLSYAALALAACASQTLAFVPAGPLSGMASSSKSRLHATKMTIDVGSK
LPLTTTFQHLADGKPTDVPALELFAGKKIVLVGVPGALTPTCSNTHVPGY
IAKAADFKAKGVDDIIVLAVNDCFAMRAWEKTFETDKVKFYADGGASFTK
AAGLEFDTGDFGGLRMQRMSALVEDGVVKKIHLEGGGGLSSSAADVLLGE
L*
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mRNA from alignment at chr28:545102..547278-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO28G01740.1 ID=NO28G01740.1|Name=NO28G01740.1|organism=Nannochloropsis oceanica|type=mRNA|length=2177bp|location=Sequence derived from alignment at chr28:545102..547278- (Nannochloropsis oceanica)
GTTTCGTCGGTGGGGATGATATGCCCGCTATATCTTTCGTTTTACTTCTC
CATCTATGCCATGCACTCTGATAAGATAGGTAACAGGACACGGGCGATGT
CATGCATTTAATGTACTTGCGACTTGCGGTGAAGATAGATACCAGTCTCC
ATGCCTGCATGTGGCTGTAACGGACATTTAAGGGTCGTCCTCCATCACTC
AGATACACCACGTTGCATAGCACCAACCCAGTCACCTTGTTTCTCTAGTC
CAGAAACCTGTTCTTGCCGGGCGCTAGGTAACTCTGCCTAAGCACAGGAC
CAAGGCACATGCACCCATCAACAGTTGTACTATGTGTCCAGGCACGCAGG
ATCGACCTCCTCTCCTCGCCTACGTCTTCATATTTTGCAATTACATCTCG
CAAAGCTCGCTTTCGTTTTTTCCGGGGCCTCGCCTGCTCCTTCATCCTCG
TCTTTATCTCCCAGTCAGAACACGCCCAAGCTCACTCAAAACTATTTCTC
CACTAACATCTCTCCCTCTCTGTCTTCGTTTGGATTACCTGCTGACACGT
GAATCTCTTCTCATTTACTCTCCAGCACATCATGCACGTACTTTCTTACG
CCGCCTTGGCCTTGGCTGCCTGTGCTTCCCAGACTCTTGCCTTTGTGCCC
GCAGGACCGCTGTCGGGAATGGCTTCGAGCAGCAAGAGGTATGTAAAGGG
AAGGAGGAAGGAAGGTAGGGGGGTAGGAAGGTGGGAAGGGGAGGGGGGGA
GGTTAGAGGCAGATGAAATGAACGAGACGTGCCGGGATTTTGTGACTGAG
TTCTGAAGCAAGAAAATGTTGTAGGGTGGATGACTTTCCGCGTGCTTCTA
AGCCTGCCTACTCGGTGTTAGGCTTACCCACCCCTCCTCCCGTTCCCTCC
TCCCTCCGTAGCCGCCTGCACGCCACCAAGATGACCATCGATGTCGGGAG
CAAGCTGCCCCTCACCACCACCTTCCAGCACCTGGCTGACGGCAAGCCCA
CGGTATGCCCCTTCATTCATCTCTCTCTCGCTTCCTTACTCCCCCCTGCC
TTTGCACATACATCCGAGGGAAATCTCGCGATCGACGTCATCGCGTATCC
TCGTCACCCTCCCTCCCTCTCCCCCCCTTTCCCTCCCCTGCCTCCCTCAC
TCAGGATGTGCCCGCATTGGAACTTTTCGCAGGGAAGAAAATTGTGCTGG
TCGGCGTCCCCGGGGCTTTGACTCCCACCTGCTCGGTAGGGAAGGAGGCT
GACGGGGAAGGACGGAGGGAAGGGAAGGAGGATGAGGAATGCTTGATCCA
GAGGTTTCCACTGTGATGCCCCTCTCCCATCGTACCCGTCTGGCCATACC
AGTCATTCTGTCAGCCATCTCCTACCACTCAGGAACAAGAAGAGGAAAAA
TTGTTACCTTAACATCCCTCCCTTTCTTCCCACCCTCCCTCCCTCCCTCC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TAGAACACCCACGTGCCGGGCTACATCGCCAAGGCCGCCGACTTCAAGGC
CAAGGGCGTGGATGACATCATCGTGCTGGCCGTCAACGATTGCTTCGCCA
TGCGCGCTTGGGAGAAGACGTTCGAGACGGACAAGGTGCGTGCCCCTCCC
TCCCTCCCTCCCTCCCTCCTTCCCACCTTCCCTCCTTCCCCCCAGCGTTT
GGTTGCCATGGCATCTGCCTCGTCGGATCCACCCTTACATTTCTCCAGAT
GCCGTTTCTCACCCCTAAAACAAAATATCTGACCCCTTTCTATCCTTTTC
CCCCTGCTCTCCCTCCCTCCCTCCCTTCCTCCCTCCAGGTGAAGTTCTAC
GCGGACGGTGGCGCCTCCTTTACCAAGGCTGCGGGCTTGGAGTTTGACAC
GGGCGATTTCGGGGGCCTCCGTATGCAGCGAATGTCAGCTCTGGTACGTC
CTCCATCCCTTCAGCCCTCCCTTTGTTCCCTCCTTACTTACTGTCTTCAT
ACCGACTGACTTATCTTCCCAATGTCCTTCCCTCCCTCCCTCCCTCCCTC
CTCCTCTCCCCTCAGGTGGAGGACGGCGTGGTGAAGAAGATTCACTTGGA
GGGGGGGGGCGGCCTCTCCTCCTCCGCCGCGGACGTGCTGCTCGGCGAGC
TCTAAGGAGGGAGGGAGGGAGGGAGGG
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Coding sequence (CDS) from alignment at chr28:545102..547278-

>NO28G01740.1 ID=NO28G01740.1|Name=NO28G01740.1|organism=Nannochloropsis oceanica|type=CDS|length=606bp|location=Sequence derived from alignment at chr28:545102..547278- (Nannochloropsis oceanica)
ATGCACGTACTTTCTTACGCCGCCTTGGCCTTGGCTGCCTGTGCTTCCCA
GACTCTTGCCTTTGTGCCCGCAGGACCGCTGTCGGGAATGGCTTCGAGCA
GCAAGAGCCGCCTGCACGCCACCAAGATGACCATCGATGTCGGGAGCAAG
CTGCCCCTCACCACCACCTTCCAGCACCTGGCTGACGGCAAGCCCACGGA
TGTGCCCGCATTGGAACTTTTCGCAGGGAAGAAAATTGTGCTGGTCGGCG
TCCCCGGGGCTTTGACTCCCACCTGCTCGAACACCCACGTGCCGGGCTAC
ATCGCCAAGGCCGCCGACTTCAAGGCCAAGGGCGTGGATGACATCATCGT
GCTGGCCGTCAACGATTGCTTCGCCATGCGCGCTTGGGAGAAGACGTTCG
AGACGGACAAGGTGAAGTTCTACGCGGACGGTGGCGCCTCCTTTACCAAG
GCTGCGGGCTTGGAGTTTGACACGGGCGATTTCGGGGGCCTCCGTATGCA
GCGAATGTCAGCTCTGGTGGAGGACGGCGTGGTGAAGAAGATTCACTTGG
AGGGGGGGGGCGGCCTCTCCTCCTCCGCCGCGGACGTGCTGCTCGGCGAG
CTCTAA
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Synonyms
Publications