NO28G01730, NO28G01730 (gene) Nannochloropsis oceanica

Overview
NameNO28G01730
Unique NameNO28G01730
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3181
Alignment locationchr28:541647..544827 +

Link to JBrowse

Properties
Property NameValue
DescriptionPre-mrna-splicing factor cwc-22
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:541647..544827 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003891Initiation_fac_eIF4g_MI
Vocabulary: Molecular Function
TermDefinition
GO:0008135translation factor activity, RNA binding
Homology
[Close]
BLAST of NO28G01730 vs. NCBI_GenBank
Match: EWM20639.1 (Initiation factor eIF-4 gamma, MA3 [Nannochloropsis gaditana])

HSP 1 Score: 442.2 bits (1136), Expect = 1.500e-120
Identity = 247/284 (86.97%), Postives = 264/284 (92.96%), Query Frame = 0 
Query:    1 MLDIFRFDPDYENNERMWKEIKKEILGESDGSEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQMQVVHDMTEQDLINLKRTIYLTIMSSAGFEEATHKLMKLDLKNGQEMELCLMLVECCSQEKSYLKYYGLIASRFCLLNRVYQDSFEEAFNQQYATIHRLETNKLRNVAKLFSHLLYSDALPWTVFECIHLNEEETTSSSRIFIKILCQELSEHMGLAKLKERFTDPYMDQAFAGLFPKYDPRATRFAINFFVSIGLGGLTDGLRTHLKHYQKRLVEE 285
            MLD+FRFDPDYE NER WKEIKKEILGES    XXXXXXXXXXXXXXXXXXXXXXXXXX       Q+QVV+DMTEQDL+NLKRTIYLTIMSSAGFEEATHKLMKLDLKNGQEMELCLMLVECCSQEK+YLKYYG IA R CLLNRVYQD+FEE F +QY+TIHRLETNKLRNVAK+F+HLLYSD+LPWTVFECIHLNEE+TTSSSRIFIKILCQELSE +GLAKLKERF+DPYM+QAFAGLFP +DPRATRFAINFFVSIGLGGLTDGLRTHLK+YQKRLVEE
Sbjct:   61 MLDVFRFDPDYEANERTWKEIKKEILGESG---XXXXXXXXXXXXXXXXXXXXXXXXXXVGMPGGNQVQVVYDMTEQDLVNLKRTIYLTIMSSAGFEEATHKLMKLDLKNGQEMELCLMLVECCSQEKTYLKYYGFIACRICLLNRVYQDAFEEVFKEQYSTIHRLETNKLRNVAKIFAHLLYSDSLPWTVFECIHLNEEDTTSSSRIFIKILCQELSEQLGLAKLKERFSDPYMEQAFAGLFPTHDPRATRFAINFFVSIGLGGLTDGLRTHLKNYQKRLVEE 341
[Close]
BLAST of NO28G01730 vs. NCBI_GenBank
Match: XP_024571744.1 (mif4g domain-containing protein ma3 domain-containing protein isoform 1 [Plasmopara halstedii] >CEG35375.1 mif4g domain-containing protein ma3 domain-containing protein isoform 1 [Plasmopara halstedii])

HSP 1 Score: 352.1 bits (902), Expect = 2.000e-93
Identity = 177/283 (62.54%), Postives = 207/283 (73.14%), Query Frame = 0 
Query:    2 LDIFRFDPDYENNERMWKEIKKEILGESDGSEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQMQVVHDMTEQDLINLKRTIYLTIMSSAGFEEATHKLMKLDLKNGQEMELCLMLVECCSQEKSYLKYYGLIASRFCLLNRVYQDSFEEAFNQQYATIHRLETNKLRNVAKLFSHLLYSDALPWTVFECIHLNEEETTSSSRIFIKILCQELSEHMGLAKLKERFTDPYMDQAFAGLFPKYDPRATRFAINFFVSIGLGGLTDGLRTHLKHYQKRLVEE 285
            LD+FRFDPDYE NE+MW  IKKEILGESD                                      +   D TEQDL+NL+RTIYLTIMSS   EE  HKLMKL+++ GQE E+CLML+ECCSQE++YL+YYGL++ RFCL+ R YQD+F+E F +QY+ IHRLETNKLRNVAKLF+HLL++DALPWTVFE IHLNEEETTSSSRIFIKILCQELSEH+GL  LKERF D  M   FAGLFP+ +PR TRFAINFF SIGLGGLT GLR +LK   K ++E+
Sbjct:  383 LDVFRFDPDYEKNEQMWAAIKKEILGESDSDS-----------------------------------KSSSDYTEQDLVNLRRTIYLTIMSSITHEECAHKLMKLNIRPGQEKEICLMLIECCSQERTYLRYYGLLSERFCLIKREYQDAFDECFAEQYSLIHRLETNKLRNVAKLFAHLLFTDALPWTVFEYIHLNEEETTSSSRIFIKILCQELSEHLGLKTLKERFFDEIMQPTFAGLFPRDNPRNTRFAINFFTSIGLGGLTTGLREYLKIAPKMIMEQ 630
[Close]
BLAST of NO28G01730 vs. NCBI_GenBank
Match: ETI55535.1 (hypothetical protein F443_01814, partial [Phytophthora parasitica P1569] >ETI55536.1 hypothetical protein, variant 1, partial [Phytophthora parasitica P1569] >ETI55537.1 hypothetical protein, variant 2, partial [Phytophthora parasitica P1569] >ETK95331.1 hypothetical protein L915_01732, partial [Phytophthora parasitica] >ETM55019.1 hypothetical protein L914_01720, partial [Phytophthora parasitica] >ETM55020.1 hypothetical protein, variant 1, partial [Phytophthora parasitica] >ETM55021.1 hypothetical protein, variant 2, partial [Phytophthora parasitica])

HSP 1 Score: 351.3 bits (900), Expect = 3.400e-93
Identity = 202/283 (71.38%), Postives = 233/283 (82.33%), Query Frame = 0 
Query:    2 LDIFRFDPDYENNERMWKEIKKEILGESDGSEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQMQVVHDMTEQDLINLKRTIYLTIMSSAGFEEATHKLMKLDLKNGQEMELCLMLVECCSQEKSYLKYYGLIASRFCLLNRVYQDSFEEAFNQQYATIHRLETNKLRNVAKLFSHLLYSDALPWTVFECIHLNEEETTSSSRIFIKILCQELSEHMGLAKLKERFTDPYMDQAFAGLFPKYDPRATRFAINFFVSIGLGGLTDGLRTHLKHYQKRLVEE 285
            LD+FRFDPDYE NE+MW EIKKEILGES         XXXXXXXXXXXXXXXXXXXXXXXXXXX     + D TEQDL+NL+RTIYLTIMSS   EE  HKLMKL+++ GQE E+C ML+ECCSQE++YL+YYGL++ RFCL+ R YQD+F+E F +QY+ IHRLETNKLRNVAKLF+HLL++DALPWTVFE IHLNEEETTSSSRIFIKILCQELSEH+G+  LKERF D  M   FAGLFPK +PR TRFAINFF SIGLGGLT  LR +LK+  K ++E+
Sbjct:  396 LDVFRFDPDYEKNEKMWAEIKKEILGES---------XXXXXXXXXXXXXXXXXXXXXXXXXXXDNNMAIQDFTEQDLVNLRRTIYLTIMSSITHEECAHKLMKLNIRPGQEKEICSMLIECCSQERTYLRYYGLLSERFCLIKREYQDAFDECFAEQYSLIHRLETNKLRNVAKLFAHLLFTDALPWTVFEYIHLNEEETTSSSRIFIKILCQELSEHLGMKTLKERFLDEIMQPTFAGLFPKDNPRNTRFAINFFTSIGLGGLTTDLREYLKNAPKMIMEQ 669
[Close]
BLAST of NO28G01730 vs. NCBI_GenBank
Match: ETL48721.1 (hypothetical protein L916_01704, partial [Phytophthora parasitica] >ETO84264.1 hypothetical protein F444_01816, partial [Phytophthora parasitica P1976] >ETO84265.1 hypothetical protein, variant 1, partial [Phytophthora parasitica P1976] >ETO84266.1 hypothetical protein, variant 2, partial [Phytophthora parasitica P1976] >ETP53346.1 hypothetical protein F442_01752, partial [Phytophthora parasitica P10297] >ETP53347.1 hypothetical protein, variant 1, partial [Phytophthora parasitica P10297] >ETP53348.1 hypothetical protein, variant 2, partial [Phytophthora parasitica P10297])

HSP 1 Score: 351.3 bits (900), Expect = 3.400e-93
Identity = 202/283 (71.38%), Postives = 233/283 (82.33%), Query Frame = 0 
Query:    2 LDIFRFDPDYENNERMWKEIKKEILGESDGSEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQMQVVHDMTEQDLINLKRTIYLTIMSSAGFEEATHKLMKLDLKNGQEMELCLMLVECCSQEKSYLKYYGLIASRFCLLNRVYQDSFEEAFNQQYATIHRLETNKLRNVAKLFSHLLYSDALPWTVFECIHLNEEETTSSSRIFIKILCQELSEHMGLAKLKERFTDPYMDQAFAGLFPKYDPRATRFAINFFVSIGLGGLTDGLRTHLKHYQKRLVEE 285
            LD+FRFDPDYE NE+MW EIKKEILGES         XXXXXXXXXXXXXXXXXXXXXXXXXXX     + D TEQDL+NL+RTIYLTIMSS   EE  HKLMKL+++ GQE E+C ML+ECCSQE++YL+YYGL++ RFCL+ R YQD+F+E F +QY+ IHRLETNKLRNVAKLF+HLL++DALPWTVFE IHLNEEETTSSSRIFIKILCQELSEH+G+  LKERF D  M   FAGLFPK +PR TRFAINFF SIGLGGLT  LR +LK+  K ++E+
Sbjct:  396 LDVFRFDPDYEKNEKMWAEIKKEILGES---------XXXXXXXXXXXXXXXXXXXXXXXXXXXDNNMAIQDFTEQDLVNLRRTIYLTIMSSITHEECAHKLMKLNIRPGQEKEICSMLIECCSQERTYLRYYGLLSERFCLIKREYQDAFDECFAEQYSLIHRLETNKLRNVAKLFAHLLFTDALPWTVFEYIHLNEEETTSSSRIFIKILCQELSEHLGMKTLKERFLDEIMQPTFAGLFPKDNPRNTRFAINFFTSIGLGGLTTDLREYLKNAPKMIMEQ 669
[Close]
BLAST of NO28G01730 vs. NCBI_GenBank
Match: ETM01784.1 (hypothetical protein L917_01665, partial [Phytophthora parasitica] >ETM01785.1 hypothetical protein, variant 1, partial [Phytophthora parasitica] >ETM01786.1 hypothetical protein, variant 2, partial [Phytophthora parasitica])

HSP 1 Score: 351.3 bits (900), Expect = 3.400e-93
Identity = 202/283 (71.38%), Postives = 233/283 (82.33%), Query Frame = 0 
Query:    2 LDIFRFDPDYENNERMWKEIKKEILGESDGSEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQMQVVHDMTEQDLINLKRTIYLTIMSSAGFEEATHKLMKLDLKNGQEMELCLMLVECCSQEKSYLKYYGLIASRFCLLNRVYQDSFEEAFNQQYATIHRLETNKLRNVAKLFSHLLYSDALPWTVFECIHLNEEETTSSSRIFIKILCQELSEHMGLAKLKERFTDPYMDQAFAGLFPKYDPRATRFAINFFVSIGLGGLTDGLRTHLKHYQKRLVEE 285
            LD+FRFDPDYE NE+MW EIKKEILGES         XXXXXXXXXXXXXXXXXXXXXXXXXXX     + D TEQDL+NL+RTIYLTIMSS   EE  HKLMKL+++ GQE E+C ML+ECCSQE++YL+YYGL++ RFCL+ R YQD+F+E F +QY+ IHRLETNKLRNVAKLF+HLL++DALPWTVFE IHLNEEETTSSSRIFIKILCQELSEH+G+  LKERF D  M   FAGLFPK +PR TRFAINFF SIGLGGLT  LR +LK+  K ++E+
Sbjct:  396 LDVFRFDPDYEKNEKMWAEIKKEILGES---------XXXXXXXXXXXXXXXXXXXXXXXXXXXDNNMAIQDFTEQDLVNLRRTIYLTIMSSITHEECAHKLMKLNIRPGQEKEICSMLIECCSQERTYLRYYGLLSERFCLIKREYQDAFDECFAEQYSLIHRLETNKLRNVAKLFAHLLFTDALPWTVFEYIHLNEEETTSSSRIFIKILCQELSEHLGMKTLKERFLDEIMQPTFAGLFPKDNPRNTRFAINFFTSIGLGGLTTDLREYLKNAPKMIMEQ 669
[Close]
BLAST of NO28G01730 vs. NCBI_GenBank
Match: XP_008899211.1 (hypothetical protein PPTG_06917 [Phytophthora parasitica INRA-310] >XP_008899212.1 hypothetical protein, variant 2 [Phytophthora parasitica INRA-310] >XP_008899213.1 hypothetical protein, variant 1 [Phytophthora parasitica INRA-310] >ETN15694.1 hypothetical protein PPTG_06917 [Phytophthora parasitica INRA-310] >ETN15695.1 hypothetical protein, variant 1 [Phytophthora parasitica INRA-310] >ETN15696.1 hypothetical protein, variant 2 [Phytophthora parasitica INRA-310] >KUF94800.1 Nucampholin [Phytophthora nicotianae])

HSP 1 Score: 351.3 bits (900), Expect = 3.400e-93
Identity = 202/283 (71.38%), Postives = 233/283 (82.33%), Query Frame = 0 
Query:    2 LDIFRFDPDYENNERMWKEIKKEILGESDGSEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQMQVVHDMTEQDLINLKRTIYLTIMSSAGFEEATHKLMKLDLKNGQEMELCLMLVECCSQEKSYLKYYGLIASRFCLLNRVYQDSFEEAFNQQYATIHRLETNKLRNVAKLFSHLLYSDALPWTVFECIHLNEEETTSSSRIFIKILCQELSEHMGLAKLKERFTDPYMDQAFAGLFPKYDPRATRFAINFFVSIGLGGLTDGLRTHLKHYQKRLVEE 285
            LD+FRFDPDYE NE+MW EIKKEILGES         XXXXXXXXXXXXXXXXXXXXXXXXXXX     + D TEQDL+NL+RTIYLTIMSS   EE  HKLMKL+++ GQE E+C ML+ECCSQE++YL+YYGL++ RFCL+ R YQD+F+E F +QY+ IHRLETNKLRNVAKLF+HLL++DALPWTVFE IHLNEEETTSSSRIFIKILCQELSEH+G+  LKERF D  M   FAGLFPK +PR TRFAINFF SIGLGGLT  LR +LK+  K ++E+
Sbjct:  393 LDVFRFDPDYEKNEKMWAEIKKEILGES---------XXXXXXXXXXXXXXXXXXXXXXXXXXXDNNMAIQDFTEQDLVNLRRTIYLTIMSSITHEECAHKLMKLNIRPGQEKEICSMLIECCSQERTYLRYYGLLSERFCLIKREYQDAFDECFAEQYSLIHRLETNKLRNVAKLFAHLLFTDALPWTVFEYIHLNEEETTSSSRIFIKILCQELSEHLGMKTLKERFLDEIMQPTFAGLFPKDNPRNTRFAINFFTSIGLGGLTTDLREYLKNAPKMIMEQ 666
[Close]
BLAST of NO28G01730 vs. NCBI_GenBank
Match: XP_009527197.1 (hypothetical protein PHYSODRAFT_315122 [Phytophthora sojae] >XP_009539786.1 hypothetical protein PHYSODRAFT_320313 [Phytophthora sojae] >EGZ04810.1 hypothetical protein PHYSODRAFT_320313 [Phytophthora sojae] >EGZ18139.1 hypothetical protein PHYSODRAFT_315122 [Phytophthora sojae])

HSP 1 Score: 345.9 bits (886), Expect = 1.400e-91
Identity = 195/283 (68.90%), Postives = 225/283 (79.51%), Query Frame = 0 
Query:    2 LDIFRFDPDYENNERMWKEIKKEILGESDGSEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQMQVVHDMTEQDLINLKRTIYLTIMSSAGFEEATHKLMKLDLKNGQEMELCLMLVECCSQEKSYLKYYGLIASRFCLLNRVYQDSFEEAFNQQYATIHRLETNKLRNVAKLFSHLLYSDALPWTVFECIHLNEEETTSSSRIFIKILCQELSEHMGLAKLKERFTDPYMDQAFAGLFPKYDPRATRFAINFFVSIGLGGLTDGLRTHLKHYQKRLVEE 285
            LD+FRFDPDYE NE+MW  IKKEILGES    XXXXXXXXXXXXXXXXXXXXXX               + D TEQDL+NL+RTIYLTIMSS   EE  HKLMKL+++ GQE E+C ML+ECCSQE++YL+YYGL++ RFCL+ R YQD+F+E F +QY+ IHRLETNKLRNVAKLF+HLL++DALPWTVFE I LNEEETTSSSRIFIKILCQELSEH+G+  LKERF D  M   F GLFPK +PR TRFAINFF SIGLGGLT  LR HLK+  K ++E+
Sbjct:  284 LDVFRFDPDYEKNEQMWSAIKKEILGESXXXXXXXXXXXXXXXXXXXXXXXXXXVQTDNNV-------AIQDYTEQDLVNLRRTIYLTIMSSITHEECAHKLMKLNIRPGQEKEICSMLIECCSQERTYLRYYGLLSERFCLIKREYQDAFDECFAEQYSLIHRLETNKLRNVAKLFAHLLFTDALPWTVFEYIRLNEEETTSSSRIFIKILCQELSEHLGMKTLKERFLDEIMQPTFGGLFPKDNPRNTRFAINFFTSIGLGGLTTDLREHLKNAPKMIMEQ 559
[Close]
BLAST of NO28G01730 vs. NCBI_GenBank
Match: XP_008610869.1 (hypothetical protein SDRG_06842 [Saprolegnia diclina VS20] >EQC35552.1 hypothetical protein SDRG_06842 [Saprolegnia diclina VS20])

HSP 1 Score: 345.9 bits (886), Expect = 1.400e-91
Identity = 192/281 (68.33%), Postives = 230/281 (81.85%), Query Frame = 0 
Query:    2 LDIFRFDPDYENNERMWKEIKKEILGESDGSEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQMQVVHDMTEQDLINLKRTIYLTIMSSAGFEEATHKLMKLDLKNGQEMELCLMLVECCSQEKSYLKYYGLIASRFCLLNRVYQDSFEEAFNQQYATIHRLETNKLRNVAKLFSHLLYSDALPWTVFECIHLNEEETTSSSRIFIKILCQELSEHMGLAKLKERFTDPYMDQAFAGLFPKYDPRATRFAINFFVSIGLGGLTDGLRTHLKHYQKRLV 283
            LDIFRFDPD+E NERMWKEIKKE+LGE     XXXXXXXXXXXXXXXXXXXXXX               +HD +EQDL+NL+RTIYLTIMSS   EE  HKL++L+++ GQE+E+C ML+ECCSQE++YL+YYGL+  RFCL+ R YQ++F++AF +QYATIHRLETNKLRNVAK F+HLL+SDALPWTVFE I L+EEETTSSSRIFIKILCQEL++H+G+AKLKERF D +M   F+GLFPK +PR+ RFAINFF SIGLGGLT  LR HLK+  K ++
Sbjct:  344 LDIFRFDPDFEKNERMWKEIKKELLGEDSXXXXXXXXXXXXXXXXXXXXXXXXXTTLQ-----------IHDFSEQDLVNLRRTIYLTIMSSVSHEECAHKLLRLNIRPGQEVEICGMLIECCSQERTYLRYYGLLGQRFCLIQREYQNAFDDAFAKQYATIHRLETNKLRNVAKFFAHLLFSDALPWTVFEYIRLSEEETTSSSRIFIKILCQELAQHLGVAKLKERFMDEFMAATFSGLFPKENPRSMRFAINFFTSIGLGGLTVELREHLKNAPKAIM 613
[Close]
BLAST of NO28G01730 vs. NCBI_GenBank
Match: XP_002897758.1 (nucampholin [Phytophthora infestans T30-4] >EEY64831.1 nucampholin [Phytophthora infestans T30-4])

HSP 1 Score: 345.9 bits (886), Expect = 1.400e-91
Identity = 199/283 (70.32%), Postives = 232/283 (81.98%), Query Frame = 0 
Query:    2 LDIFRFDPDYENNERMWKEIKKEILGESDGSEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQMQVVHDMTEQDLINLKRTIYLTIMSSAGFEEATHKLMKLDLKNGQEMELCLMLVECCSQEKSYLKYYGLIASRFCLLNRVYQDSFEEAFNQQYATIHRLETNKLRNVAKLFSHLLYSDALPWTVFECIHLNEEETTSSSRIFIKILCQELSEHMGLAKLKERFTDPYMDQAFAGLFPKYDPRATRFAINFFVSIGLGGLTDGLRTHLKHYQKRLVEE 285
            LD+FRFDPDYE NE++W EIKKEILGES     XXXXXXXXXXXXXXXXXXXXXXXXXXX         + D TEQDL+NL+RTIYLTIMSS   EE  HKLMKL+++ GQE E+C ML+ECCSQE++YL+YYGL++ RFCL+ R YQD+F+E F +QY+ IHRLETNKLRNVAKLF+HLL++DALPWTVFE + LNEEETTSSSRIFIKILCQELSEH+G+  LKERF D  M   FAGLFPK +PR TRFAINFF SIGLGGLT  LR +LK+  K ++E+
Sbjct:  350 LDVFRFDPDYEKNEKLWAEIKKEILGES-----XXXXXXXXXXXXXXXXXXXXXXXXXXXLVPADNNMAIQDFTEQDLVNLRRTIYLTIMSSITHEECAHKLMKLNIRPGQEKEICSMLLECCSQERTYLRYYGLLSERFCLIKREYQDAFDECFAEQYSLIHRLETNKLRNVAKLFAHLLFTDALPWTVFEYVRLNEEETTSSSRIFIKILCQELSEHLGMKTLKERFLDEIMQPTFAGLFPKDNPRNTRFAINFFTSIGLGGLTTDLREYLKNAPKMIMEQ 627
[Close]
BLAST of NO28G01730 vs. NCBI_GenBank
Match: GAX98859.1 (Hypothetical protein PINS_006714 [Pythium insidiosum])

HSP 1 Score: 344.4 bits (882), Expect = 4.200e-91
Identity = 203/283 (71.73%), Postives = 237/283 (83.75%), Query Frame = 0 
Query:    2 LDIFRFDPDYENNERMWKEIKKEILGESDGSEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQMQVVHDMTEQDLINLKRTIYLTIMSSAGFEEATHKLMKLDLKNGQEMELCLMLVECCSQEKSYLKYYGLIASRFCLLNRVYQDSFEEAFNQQYATIHRLETNKLRNVAKLFSHLLYSDALPWTVFECIHLNEEETTSSSRIFIKILCQELSEHMGLAKLKERFTDPYMDQAFAGLFPKYDPRATRFAINFFVSIGLGGLTDGLRTHLKHYQKRLVEE 285
            LD+FRFDP++E NE+MW  IKKEILGES    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  +Q   DMTEQDL+NL+RTIYLTIMSS   EE  HKL+K++++ GQE E+C ML+ECCSQE++YL+YYGL+  RFC++ R YQD+F+E F +QY+ IHRLETNKLRNVAK F+HLLY+DALPWTVFE I LNEE+TTSSSRIFIKILCQELSEHMGL  LKERF DP M+Q FAG+FPK +PR TRFAINFF SIGLGGLT  LR  LK+  K ++ +
Sbjct:  420 LDVFRFDPEFEKNEKMWTAIKKEILGESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPIQ---DMTEQDLVNLRRTIYLTIMSSISHEECAHKLLKINIRPGQEKEICSMLLECCSQERTYLRYYGLLGQRFCMIKREYQDAFDECFAEQYSLIHRLETNKLRNVAKFFAHLLYTDALPWTVFEFIRLNEEDTTSSSRIFIKILCQELSEHMGLKTLKERFLDPIMEQTFAGMFPKDNPRNTRFAINFFTSIGLGGLTTDLREFLKNAPKIIMAQ 699
The following BLAST results are available for this feature:
BLAST of NO28G01730 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM20639.11.500e-12086.97Initiation factor eIF-4 gamma, MA3 [Nannochloropsi... [more]
XP_024571744.12.000e-9362.54mif4g domain-containing protein ma3 domain-contain... [more]
ETI55535.13.400e-9371.38hypothetical protein F443_01814, partial [Phytopht... [more]
ETL48721.13.400e-9371.38hypothetical protein L916_01704, partial [Phytopht... [more]
ETM01784.13.400e-9371.38hypothetical protein L917_01665, partial [Phytopht... [more]
XP_008899211.13.400e-9371.38hypothetical protein PPTG_06917 [Phytophthora para... [more]
XP_009527197.11.400e-9168.90hypothetical protein PHYSODRAFT_315122 [Phytophtho... [more]
XP_008610869.11.400e-9168.33hypothetical protein SDRG_06842 [Saprolegnia dicli... [more]
XP_002897758.11.400e-9170.32nucampholin [Phytophthora infestans T30-4] >EEY648... [more]
GAX98859.14.200e-9171.73Hypothetical protein PINS_006714 [Pythium insidios... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR087ncniR087Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR101ngnoR101Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO28G01730.1NO28G01730.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO28G01730.2NO28G01730.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|674967gene_11133Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100757g2gene9766Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO28G01730.1NO28G01730.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO28G01730.2NO28G01730.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO28G01730 ID=NO28G01730|Name=NO28G01730|organism=Nannochloropsis oceanica|type=gene|length=3181bp
AGATGCTCGATATCTTCCGCTTCGATCCTGACTATGAGAACAATGAGAGA
ATGTGGAAAGAAATCAAGAAGGAGATTCTGGGGgtacgtgccgtccctcc
ctccctcccttcccctccctccctccgtcccattgtcttgtgcgtgcgct
ctagaccactggaagaagtagatggatacagtgaaagtcatcgagaagga
tgacgtgaggggacggggaagactgaggaaagaagtgagggaggaaggga
gagagggagaggagaggtggggggaaggatattgatttcttttcctcttt
gcatatatgcacccatcgcttcccctccctcccatcctcccttcctccct
ccctccttccctccctcccttgtgtcccgccagGAGAGCGACGGCTCGGA
GGCCGATGATGAAAGTGGAAGCGACGACGAGGAGGACGAGGAAAGCGAGG
ACGAGGGGGAGGGAGGGGGGGGAGGAGCAATTGGCAGGTCCGGCGGAGGA
CAGATGCAGgtgagtacgtgagggagggagggagggagggagggagggtg
ggggggggaagggggaaatcacgtcatggaggctgtccaaacaaacacca
taacttccgctgttcctgaccctccctcccctccctccctccctccctcc
ctccctccctccctccctccctccctccctccccccccccttccgttccc
tccttcagGTCGTCCACGACATGACGGAGCAAGACCTGATCAACCTCAAG
CGCACCATTTACCTGACCATTATGAGCTCGGCGGGCTTCGAAGAGGCCAC
GCACAAGCTGATGAAACTGGATTTGAAGgtgaggcaggcagggagggagg
gaagggagggagggagggaggggaggggtagacttcacttgcatgtacag
cggaaacatctcaaatgacttgatccatcctccctccctccttccatccc
gccctctcccttcctccttccctcccccccttccctctaaatatgggcca
aaacccgacctctgtctcctcaccctccctccctccctccctccctccct
ctctccctcagAACGGGCAAGAAATGGAGCTGTGTCTAATGCTCGTGGAG
TGTTGCTCCCAAGAGAAGTCTTACCTCAAGTACTACGGTTTGATCGCCTC
CCGCTTCTGCCTCCTCAACCGCGTCTACCAGgtgcgccctccctccctcc
ctccctctctccctccctccctccctccctccctccctctctccctccct
ccctccctccctctctccctccctccctctctccctccctccctccctcc
cctccgcgtctctcaccgcatgaaccggggcttatcaaagagcccgccgt
cctaaacccctcccaaatcaatccctccctccctccctccctccccccct
ccccagGACTCCTTCGAGGAGGCCTTCAACCAGCAGTACGCGACCATCCA
CCGGCTCGAGACGAACAAGCTCCGAAACGTGGCTAAGCTCTTCTCCCACC
TCCTCTACTCCGATGCCCTCCCTTGGACCGTCTTTGAGgtacgccctccc
tccctccctccctccttcccccctccctcctttcatttttgtgacttgca
tctttcagccatttcaatgacaagatatttggaactccctccctccctcc
cttccttccttcctccctcagTGCATCCACCTCAACGAAGAAGAAACCAC
TTCATCCTCTCGTATCTTCATCAAAATCCTCTGCCAGgtgagggggaggg
agggagggagggagggagggcgggcatctcgaaacacatgctcaacatcg
ctgcgacccaaaaaaagggaagaaagagagggaaggagggagggagggag
ggagggagagcaggcattctcatatctacccctacctcccaccctcacag
GAGCTCTCGGAACATATGGGCCTAGCGAAGCTCAAGGAACGCTTCACCGA
CCCCTACATGGATCAGgtacccaccctccctccctcccttccttcctccc
tccctcccttccttgctcgcttcctccccatcgcatccgcctcgtcaagt
ccgtcgttttgacacccatatcatcatccttcccctcctcccccaaaatt
attcccccctccatctcacgtcccgtcctccctccctccccccctccctc
cctccctccctccctccctccctcagGCCTTTGCCGGCCTCTTTCCTAAG
TACGATCCTCGCGCCACTCGTTTTGCCATCAATTTCTTCGTCTCCATCGG
CCTCGGTGGGCTCACGGACGGTCTACGAACACATCTGAAGCATTACCAGA
AACGCCTCGTGGAAGAAGCCCAGgtgcgtccttgcccgccctccctccct
ccctccctccctccctccctccctccctccctccctccctccctccctcc
ctctcttttacccttgatgcatggacaaaaaatttggggcagggagaggt
ggggggaagaggaacgaaagagggagggagggagggagggagggagggaa
ggcacgagctcagtttctctccacctcttctttcacacactctcacagGC
TGCAGCGCTCAAGCAAGCAGCAGAAAGCAGCGACAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGTAGCAGTAGTAGCGGCAGTAGCGGCAGTAGCAGTAGT
AGCAGTAGTAGCAGTGGTAGCAGCAGCGGGTCTTCCTCCTCCTCTTCCTC
CTCCAGTGACAGTGATAGCGACTAGAGGGTGAAGAGGGAGGGAGAGAGGG
AGGGAGGGAGGGAGGGATGGAGGGACTTGTGGTTCAAAGATCACGAAAAG
GGAGAAAGCAAATAAATGTGGGGAATCGATAAGAGGGAGGAGGATACGGG
AAGACAGGAAGGGAAGGGAGGGGAGGGGAAGAGGGGGGGATAGAGGGAGG
GTGTCAGGGATCTGTTTCGGACTGAGCGAGGAGGGATGAAGAGCAGGGGA
AAGAAAGACGGCGGAGATGAAGGAGGAGATGGAGAAGGAGCGGGGAAAGA
GGAAGGAAGACGAGGGCGCGAGAAAACAAACAACGAAAGAAATTAATTGA
GGGTGATCTGAAAAGGAACCAAAGAAGACCAATACACAGATGACAGAGAC
AAACGAATACCCTGAATACATTTATGCCGACATTTAAAGATATACAAATA
TATATGTAGATGTGTTCGTGTATATAAATAC
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protein sequence of NO28G01730.1

>NO28G01730.1-protein ID=NO28G01730.1-protein|Name=NO28G01730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=345bp
MLDIFRFDPDYENNERMWKEIKKEILGESDGSEADDESGSDDEEDEESED
EGEGGGGGAIGRSGGGQMQVVHDMTEQDLINLKRTIYLTIMSSAGFEEAT
HKLMKLDLKNGQEMELCLMLVECCSQEKSYLKYYGLIASRFCLLNRVYQD
SFEEAFNQQYATIHRLETNKLRNVAKLFSHLLYSDALPWTVFECIHLNEE
ETTSSSRIFIKILCQELSEHMGLAKLKERFTDPYMDQAFAGLFPKYDPRA
TRFAINFFVSIGLGGLTDGLRTHLKHYQKRLVEEAQAAALKQAAESSDSS
SSSSSSSSSSSSGSSGSSSSSSSSSGSSSGSSSSSSSSSDSDSD*
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protein sequence of NO28G01730.2

>NO28G01730.2-protein ID=NO28G01730.2-protein|Name=NO28G01730.2|organism=Nannochloropsis oceanica|type=polypeptide|length=278bp
MQVVHDMTEQDLINLKRTIYLTIMSSAGFEEATHKLMKLDLKNGQEMELC
LMLVECCSQEKSYLKYYGLIASRFCLLNRVYQDSFEEAFNQQYATIHRLE
TNKLRNVAKLFSHLLYSDALPWTVFECIHLNEEETTSSSRIFIKILCQEL
SEHMGLAKLKERFTDPYMDQAFAGLFPKYDPRATRFAINFFVSIGLGGLT
DGLRTHLKHYQKRLVEEAQAAALKQAAESSDSSSSSSSSSSSSSSGSSGS
SSSSSSSSGSSSGSSSSSSSSSDSDSD*
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