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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr28 | genome | chr28:541647..544827 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO28G01730.1 vs.
Match: EWM20639.1 (Initiation factor eIF-4 gamma, MA3 [Nannochloropsis gaditana]) HSP 1 Score: 496.9 bits (1278), Expect = 5.100e-137 Identity = 292/344 (84.88%), Postives = 317/344 (92.15%), Query Frame = 0
Query: 1 MLDIFRFDPDYENNERMWKEIKKEILGESDGSEADDESGSDDEEDEESEDEGEGGGGGAIGRSGGGQMQVVHDMTEQDLINLKRTIYLTIMSSAGFEEATHKLMKLDLKNGQEMELCLMLVECCSQEKSYLKYYGLIASRFCLLNRVYQDSFEEAFNQQYATIHRLETNKLRNVAKLFSHLLYSDALPWTVFECIHLNEEETTSSSRIFIKILCQELSEHMGLAKLKERFTDPYMDQAFAGLFPKYDPRATRFAINFFVSIGLGGLTDGLRTHLKHYQKRLVEEAQAAALKQAAESSDSSSSSSSSSSSSSSGSSGSSSSSSSSSGSSSGSSSSSSSSSDSDSD 345
MLD+FRFDPDYE NER WKEIKKEILGES GSEADDESGSD+EE E E+EG GG A+G GG Q+QVV+DMTEQDL+NLKRTIYLTIMSSAGFEEATHKLMKLDLKNGQEMELCLMLVECCSQEK+YLKYYG IA R CLLNRVYQD+FEE F +QY+TIHRLETNKLRNVAK+F+HLLYSD+LPWTVFECIHLNEE+TTSSSRIFIKILCQELSE +GLAKLKERF+DPYM+QAFAGLFP +DPRATRFAINFFVSIGLGGLTDGLRTHLK+YQKRLVEEAQAAAL+QA ESSDS SSSSSSSSSSSS SS SSSS SSS+ SSS SS+SSSSSS+S+SD
Sbjct: 61 MLDVFRFDPDYEANERTWKEIKKEILGES-GSEADDESGSDEEE-ESDEEEGRQEGG-AVGMPGGNQVQVVYDMTEQDLVNLKRTIYLTIMSSAGFEEATHKLMKLDLKNGQEMELCLMLVECCSQEKTYLKYYGFIACRICLLNRVYQDAFEEVFKEQYSTIHRLETNKLRNVAKIFAHLLYSDSLPWTVFECIHLNEEDTTSSSRIFIKILCQELSEQLGLAKLKERFSDPYMEQAFAGLFPTHDPRATRFAINFFVSIGLGGLTDGLRTHLKNYQKRLVEEAQAAALRQAEESSDSDSSSSSSSSSSSS-SSSSSSSDSSSTSSSSSSSTSSSSSSESESD 400
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO28G01730.1 ID=NO28G01730.1|Name=NO28G01730.1|organism=Nannochloropsis oceanica|type=mRNA|length=1493bp
AGATGCTCGATATCTTCCGCTTCGATCCTGACTATGAGAACAATGAGAGA
ATGTGGAAAGAAATCAAGAAGGAGATTCTGGGGGAGAGCGACGGCTCGGA
GGCCGATGATGAAAGTGGAAGCGACGACGAGGAGGACGAGGAAAGCGAGG
ACGAGGGGGAGGGAGGGGGGGGAGGAGCAATTGGCAGGTCCGGCGGAGGA
CAGATGCAGGTCGTCCACGACATGACGGAGCAAGACCTGATCAACCTCAA
GCGCACCATTTACCTGACCATTATGAGCTCGGCGGGCTTCGAAGAGGCCA
CGCACAAGCTGATGAAACTGGATTTGAAGAACGGGCAAGAAATGGAGCTG
TGTCTAATGCTCGTGGAGTGTTGCTCCCAAGAGAAGTCTTACCTCAAGTA
CTACGGTTTGATCGCCTCCCGCTTCTGCCTCCTCAACCGCGTCTACCAGG
ACTCCTTCGAGGAGGCCTTCAACCAGCAGTACGCGACCATCCACCGGCTC
GAGACGAACAAGCTCCGAAACGTGGCTAAGCTCTTCTCCCACCTCCTCTA
CTCCGATGCCCTCCCTTGGACCGTCTTTGAGTGCATCCACCTCAACGAAG
AAGAAACCACTTCATCCTCTCGTATCTTCATCAAAATCCTCTGCCAGGAG
CTCTCGGAACATATGGGCCTAGCGAAGCTCAAGGAACGCTTCACCGACCC
CTACATGGATCAGGCCTTTGCCGGCCTCTTTCCTAAGTACGATCCTCGCG
CCACTCGTTTTGCCATCAATTTCTTCGTCTCCATCGGCCTCGGTGGGCTC
ACGGACGGTCTACGAACACATCTGAAGCATTACCAGAAACGCCTCGTGGA
AGAAGCCCAGGCTGCAGCGCTCAAGCAAGCAGCAGAAAGCAGCGACAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGTAGCAGTAGTAGCGGCAGTAGCGGC
AGTAGCAGTAGTAGCAGTAGTAGCAGTGGTAGCAGCAGCGGGTCTTCCTC
CTCCTCTTCCTCCTCCAGTGACAGTGATAGCGACTAGAGGGTGAAGAGGG
AGGGAGAGAGGGAGGGAGGGAGGGAGGGATGGAGGGACTTGTGGTTCAAA
GATCACGAAAAGGGAGAAAGCAAATAAATGTGGGGAATCGATAAGAGGGA
GGAGGATACGGGAAGACAGGAAGGGAAGGGAGGGGAGGGGAAGAGGGGGG
GATAGAGGGAGGGTGTCAGGGATCTGTTTCGGACTGAGCGAGGAGGGATG
AAGAGCAGGGGAAAGAAAGACGGCGGAGATGAAGGAGGAGATGGAGAAGG
AGCGGGGAAAGAGGAAGGAAGACGAGGGCGCGAGAAAACAAACAACGAAA
GAAATTAATTGAGGGTGATCTGAAAAGGAACCAAAGAAGACCAATACACA
GATGACAGAGACAAACGAATACCCTGAATACATTTATGCCGACATTTAAA
GATATACAAATATATATGTAGATGTGTTCGTGTATATAAATAC back to topprotein sequence of NO28G01730.1 >NO28G01730.1-protein ID=NO28G01730.1-protein|Name=NO28G01730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=345bp
MLDIFRFDPDYENNERMWKEIKKEILGESDGSEADDESGSDDEEDEESED
EGEGGGGGAIGRSGGGQMQVVHDMTEQDLINLKRTIYLTIMSSAGFEEAT
HKLMKLDLKNGQEMELCLMLVECCSQEKSYLKYYGLIASRFCLLNRVYQD
SFEEAFNQQYATIHRLETNKLRNVAKLFSHLLYSDALPWTVFECIHLNEE
ETTSSSRIFIKILCQELSEHMGLAKLKERFTDPYMDQAFAGLFPKYDPRA
TRFAINFFVSIGLGGLTDGLRTHLKHYQKRLVEEAQAAALKQAAESSDSS
SSSSSSSSSSSSGSSGSSSSSSSSSGSSSGSSSSSSSSSDSDSD* back to topmRNA from alignment at chr28:541647..544827+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO28G01730.1 ID=NO28G01730.1|Name=NO28G01730.1|organism=Nannochloropsis oceanica|type=mRNA|length=3181bp|location=Sequence derived from alignment at chr28:541647..544827+ (Nannochloropsis oceanica)
AGATGCTCGATATCTTCCGCTTCGATCCTGACTATGAGAACAATGAGAGA
ATGTGGAAAGAAATCAAGAAGGAGATTCTGGGGGTACGTGCCGTCCCTCC
CTCCCTCCCTTCCCCTCCCTCCCTCCGTCCCATTGTCTTGTGCGTGCGCT
CTAGACCACTGGAAGAAGTAGATGGATACAGTGAAAGTCATCGAGAAGGA
TGACGTGAGGGGACGGGGAAGACTGAGGAAAGAAGTGAGGGAGGAAGGGA
GAGAGGGAGAGGAGAGGTGGGGGGAAGGATATTGATTTCTTTTCCTCTTT
GCATATATGCACCCATCGCTTCCCCTCCCTCCCATCCTCCCTTCCTCCCT
CCCTCCTTCCCTCCCTCCCTTGTGTCCCGCCAGGAGAGCGACGGCTCGGA
GGCCGATGATGAAAGTGGAAGCGACGACGAGGAGGACGAGGAAAGCGAGG
ACGAGGGGGAGGGAGGGGGGGGAGGAGCAATTGGCAGGTCCGGCGGAGGA
CAGATGCAGGTGAGTACGTGAGGGAGGGAGGGAGGGAGGGAGGGAGGGTG
GGGGGGGGAAGGGGGAAATCACGTCATGGAGGCTGTCCAAACAAACACCA
TAACTTCCGCTGTTCCTGACCCTCCCTCCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCCCCCCCTTCCGTTCCC
TCCTTCAGGTCGTCCACGACATGACGGAGCAAGACCTGATCAACCTCAAG
CGCACCATTTACCTGACCATTATGAGCTCGGCGGGCTTCGAAGAGGCCAC
GCACAAGCTGATGAAACTGGATTTGAAGGTGAGGCAGGCAGGGAGGGAGG
GAAGGGAGGGAGGGAGGGAGGGGAGGGGTAGACTTCACTTGCATGTACAG
CGGAAACATCTCAAATGACTTGATCCATCCTCCCTCCCTCCTTCCATCCC
GCCCTCTCCCTTCCTCCTTCCCTCCCCCCCTTCCCTCTAAATATGGGCCA
AAACCCGACCTCTGTCTCCTCACCCTCCCTCCCTCCCTCCCTCCCTCCCT
CTCTCCCTCAGAACGGGCAAGAAATGGAGCTGTGTCTAATGCTCGTGGAG
TGTTGCTCCCAAGAGAAGTCTTACCTCAAGTACTACGGTTTGATCGCCTC
CCGCTTCTGCCTCCTCAACCGCGTCTACCAGGTGCGCCCTCCCTCCCTCC
CTCCCTCTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTCTCCCTCCCT
CCCTCCCTCCCTCTCTCCCTCCCTCCCTCTCTCCCTCCCTCCCTCCCTCC
CCTCCGCGTCTCTCACCGCATGAACCGGGGCTTATCAAAGAGCCCGCCGT
CCTAAACCCCTCCCAAATCAATCCCTCCCTCCCTCCCTCCCTCCCCCCCT
CCCCAGGACTCCTTCGAGGAGGCCTTCAACCAGCAGTACGCGACCATCCA
CCGGCTCGAGACGAACAAGCTCCGAAACGTGGCTAAGCTCTTCTCCCACC
TCCTCTACTCCGATGCCCTCCCTTGGACCGTCTTTGAGGTACGCCCTCCC
TCCCTCCCTCCCTCCTTCCCCCCTCCCTCCTTTCATTTTTGTGACTTGCA
TCTTTCAGCCATTTCAATGACAAGATATTTGGAACTCCCTCCCTCCCTCC
CTTCCTTCCTTCCTCCCTCAGTGCATCCACCTCAACGAAGAAGAAACCAC
TTCATCCTCTCGTATCTTCATCAAAATCCTCTGCCAGGTGAGGGGGAGGG
AGGGAGGGAGGGAGGGAGGGCGGGCATCTCGAAACACATGCTCAACATCG
CTGCGACCCAAAAAAAGGGAAGAAAGAGAGGGAAGGAGGGAGGGAGGGAG
GGAGGGAGAGCAGGCATTCTCATATCTACCCCTACCTCCCACCCTCACAG
GAGCTCTCGGAACATATGGGCCTAGCGAAGCTCAAGGAACGCTTCACCGA
CCCCTACATGGATCAGGTACCCACCCTCCCTCCCTCCCTTCCTTCCTCCC
TCCCTCCCTTCCTTGCTCGCTTCCTCCCCATCGCATCCGCCTCGTCAAGT
CCGTCGTTTTGACACCCATATCATCATCCTTCCCCTCCTCCCCCAAAATT
ATTCCCCCCTCCATCTCACGTCCCGTCCTCCCTCCCTCCCCCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCAGGCCTTTGCCGGCCTCTTTCCTAAG
TACGATCCTCGCGCCACTCGTTTTGCCATCAATTTCTTCGTCTCCATCGG
CCTCGGTGGGCTCACGGACGGTCTACGAACACATCTGAAGCATTACCAGA
AACGCCTCGTGGAAGAAGCCCAGGTGCGTCCTTGCCCGCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCTCTTTTACCCTTGATGCATGGACAAAAAATTTGGGGCAGGGAGAGGT
GGGGGGAAGAGGAACGAAAGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAA
GGCACGAGCTCAGTTTCTCTCCACCTCTTCTTTCACACACTCTCACAGGC
TGCAGCGCTCAAGCAAGCAGCAGAAAGCAGCGACAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGTAGCAGTAGTAGCGGCAGTAGCGGCAGTAGCAGTAGT
AGCAGTAGTAGCAGTGGTAGCAGCAGCGGGTCTTCCTCCTCCTCTTCCTC
CTCCAGTGACAGTGATAGCGACTAGAGGGTGAAGAGGGAGGGAGAGAGGG
AGGGAGGGAGGGAGGGATGGAGGGACTTGTGGTTCAAAGATCACGAAAAG
GGAGAAAGCAAATAAATGTGGGGAATCGATAAGAGGGAGGAGGATACGGG
AAGACAGGAAGGGAAGGGAGGGGAGGGGAAGAGGGGGGGATAGAGGGAGG
GTGTCAGGGATCTGTTTCGGACTGAGCGAGGAGGGATGAAGAGCAGGGGA
AAGAAAGACGGCGGAGATGAAGGAGGAGATGGAGAAGGAGCGGGGAAAGA
GGAAGGAAGACGAGGGCGCGAGAAAACAAACAACGAAAGAAATTAATTGA
GGGTGATCTGAAAAGGAACCAAAGAAGACCAATACACAGATGACAGAGAC
AAACGAATACCCTGAATACATTTATGCCGACATTTAAAGATATACAAATA
TATATGTAGATGTGTTCGTGTATATAAATAC back to topCoding sequence (CDS) from alignment at chr28:541647..544827+ >NO28G01730.1 ID=NO28G01730.1|Name=NO28G01730.1|organism=Nannochloropsis oceanica|type=CDS|length=1035bp|location=Sequence derived from alignment at chr28:541647..544827+ (Nannochloropsis oceanica)
ATGCTCGATATCTTCCGCTTCGATCCTGACTATGAGAACAATGAGAGAAT
GTGGAAAGAAATCAAGAAGGAGATTCTGGGGGAGAGCGACGGCTCGGAGG
CCGATGATGAAAGTGGAAGCGACGACGAGGAGGACGAGGAAAGCGAGGAC
GAGGGGGAGGGAGGGGGGGGAGGAGCAATTGGCAGGTCCGGCGGAGGACA
GATGCAGGTCGTCCACGACATGACGGAGCAAGACCTGATCAACCTCAAGC
GCACCATTTACCTGACCATTATGAGCTCGGCGGGCTTCGAAGAGGCCACG
CACAAGCTGATGAAACTGGATTTGAAGAACGGGCAAGAAATGGAGCTGTG
TCTAATGCTCGTGGAGTGTTGCTCCCAAGAGAAGTCTTACCTCAAGTACT
ACGGTTTGATCGCCTCCCGCTTCTGCCTCCTCAACCGCGTCTACCAGGAC
TCCTTCGAGGAGGCCTTCAACCAGCAGTACGCGACCATCCACCGGCTCGA
GACGAACAAGCTCCGAAACGTGGCTAAGCTCTTCTCCCACCTCCTCTACT
CCGATGCCCTCCCTTGGACCGTCTTTGAGTGCATCCACCTCAACGAAGAA
GAAACCACTTCATCCTCTCGTATCTTCATCAAAATCCTCTGCCAGGAGCT
CTCGGAACATATGGGCCTAGCGAAGCTCAAGGAACGCTTCACCGACCCCT
ACATGGATCAGGCCTTTGCCGGCCTCTTTCCTAAGTACGATCCTCGCGCC
ACTCGTTTTGCCATCAATTTCTTCGTCTCCATCGGCCTCGGTGGGCTCAC
GGACGGTCTACGAACACATCTGAAGCATTACCAGAAACGCCTCGTGGAAG
AAGCCCAGGCTGCAGCGCTCAAGCAAGCAGCAGAAAGCAGCGACAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGTAGCAGTAGTAGCGGCAGTAGCGGCAG
TAGCAGTAGTAGCAGTAGTAGCAGTGGTAGCAGCAGCGGGTCTTCCTCCT
CCTCTTCCTCCTCCAGTGACAGTGATAGCGACTAG back to top
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