NO28G01690, NO28G01690 (gene) Nannochloropsis oceanica

Overview
NameNO28G01690
Unique NameNO28G01690
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1322
Alignment locationchr28:527286..528607 +

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Properties
Property NameValue
DescriptionThioredoxin
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:527286..528607 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0015035protein disulfide oxidoreductase activity
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0006662glycerol ether metabolic process
GO:0045454cell redox homeostasis
GO:0019725cellular homeostasis
GO:0008152metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR036249Thioredoxin-like_sf
IPR005746Thioredoxin
IPR013766Thioredoxin_domain
Vocabulary: Cellular Component
TermDefinition
GO:0005623cell
Homology
[Close]
BLAST of NO28G01690 vs. NCBI_GenBank
Match: EWM20645.1 (thioredoxin [Nannochloropsis gaditana])

HSP 1 Score: 184.1 bits (466), Expect = 4.200e-43
Identity = 83/114 (72.81%), Postives = 94/114 (82.46%), Query Frame = 0 
Query:   85 GDDSVEIGHVDSLEGLREVIQSKGVERPLVLRFHASWCSACKKFAPSWQQTANAYNGHFDFVDVDVTGKRDIITEMGLTVLPHSHFYKAGSKIEDFGVSVKKLNALLERLDKYK 199
            G++   IG + +LE L   IQ+ G  +PLVLRFHASWCSACK+FAP+WQQT NAY  +FDFVDVDVTGKRDII  MGLTVLPHSHFY  GSK+EDFGVS+KKLN LLERLDKYK
Sbjct:   79 GEEDALIGDIATLEELEAAIQTSGTTKPLVLRFHASWCSACKRFAPTWQQTVNAYEEYFDFVDVDVTGKRDIIMAMGLTVLPHSHFYVGGSKVEDFGVSIKKLNGLLERLDKYK 192
[Close]
BLAST of NO28G01690 vs. NCBI_GenBank
Match: XP_005855071.1 (thioredoxin, partial [Nannochloropsis gaditana CCMP526] >EKU21294.1 thioredoxin, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 177.9 bits (450), Expect = 3.000e-41
Identity = 80/105 (76.19%), Postives = 89/105 (84.76%), Query Frame = 0 
Query:   94 VDSLEGLREVIQSKGVERPLVLRFHASWCSACKKFAPSWQQTANAYNGHFDFVDVDVTGKRDIITEMGLTVLPHSHFYKAGSKIEDFGVSVKKLNALLERLDKYK 199
            + +LE L   IQ+ G  +PLVLRFHASWCSACK+FAP+WQQT NAY  +FDFVDVDVTGKRDII  MGLTVLPHSHFY  GSK+EDFGVS+KKLN LLERLDKYK
Sbjct:    2 IATLEELEAAIQTSGTTKPLVLRFHASWCSACKRFAPTWQQTVNAYEEYFDFVDVDVTGKRDIIMAMGLTVLPHSHFYVGGSKVEDFGVSIKKLNGLLERLDKYK 106
[Close]
BLAST of NO28G01690 vs. NCBI_GenBank
Match: XP_005717116.1 (thioredoxin domain containing protein [Chondrus crispus] >CDF37297.1 thioredoxin domain containing protein [Chondrus crispus])

HSP 1 Score: 74.7 bits (182), Expect = 3.600e-10
Identity = 33/106 (31.13%), Postives = 58/106 (54.72%), Query Frame = 0 
Query:   89 VEIGHVDSLEGLREVIQSKGVERPLVLRFHASWCSACKKFAPSWQQTANAYNGHFDFVDVDVTGKRDIITEMGLTVLPHSHFYKAGSKIEDF-GVSVKKLNALLER 194
            + + HV SL   + ++ + G ++ +V+ FHA+WC  C   AP +++ +  Y G   F+ VDV   +D+     ++ +P  H Y  G+++ DF G    KL A +ER
Sbjct:    1 MSLEHVSSLSAFQTILNTSG-KKLVVVDFHATWCGPCHAIAPFYEKLSRKYAGRARFIKVDVDEAQDVAQHCSVSAMPTFHMYMKGNRVSDFSGADSSKLAAEVER 105
[Close]
BLAST of NO28G01690 vs. NCBI_GenBank
Match: 1EP8_A (Chain A, Crystal Structure Of A Mutated Thioredoxin, D30a, From Chlamydomonas Reinhardtii >1EP8_B Chain B, Crystal Structure Of A Mutated Thioredoxin, D30a, From Chlamydomonas Reinhardtii)

HSP 1 Score: 70.1 bits (170), Expect = 8.900e-9
Identity = 33/93 (35.48%), Postives = 50/93 (53.76%), Query Frame = 0 
Query:  102 EVIQSKGVERPLVLRFHASWCSACKKFAPSWQQTANAYNGHFDFVDVDVTGKRDIITEMGLTVLPHSHFYKAGSKIEDF-GVSVKKLNALLER 194
            ++ + K   +P+V+ F A+WC  CK  AP ++  +N Y G   F+ VDV     +    G+T +P  H YK G K +D  G S  KL AL+ +
Sbjct:   16 QLAKGKEEHKPIVVAFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMPTFHVYKDGVKADDLVGASQDKLKALVAK 108
[Close]
BLAST of NO28G01690 vs. NCBI_GenBank
Match: 1EP7_A (Chain A, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas Reinhardtii >1EP7_B Chain B, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas Reinhardtii >1TOF_A Chain A, Thioredoxin H (Oxidized Form), Nmr, 23 Structures)

HSP 1 Score: 69.7 bits (169), Expect = 1.200e-8
Identity = 33/93 (35.48%), Postives = 50/93 (53.76%), Query Frame = 0 
Query:  102 EVIQSKGVERPLVLRFHASWCSACKKFAPSWQQTANAYNGHFDFVDVDVTGKRDIITEMGLTVLPHSHFYKAGSKIEDF-GVSVKKLNALLER 194
            ++ + K   +P+V+ F A+WC  CK  AP ++  +N Y G   F+ VDV     +    G+T +P  H YK G K +D  G S  KL AL+ +
Sbjct:   16 QLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMPTFHVYKDGVKADDLVGASQDKLKALVAK 108
[Close]
BLAST of NO28G01690 vs. NCBI_GenBank
Match: XP_001694574.1 (thioredoxin h1 [Chlamydomonas reinhardtii] >P80028.3 RecName: Full=Thioredoxin H-type; Short=Trx-H; AltName: Full=Thioredoxin-CH1 >CAA55399.1 thioredoxin h [Chlamydomonas reinhardtii] >CAA56850.1 thioredoxin h [Chlamydomonas reinhardtii] >PNW78569.1 hypothetical protein CHLRE_09g391900v5 [Chlamydomonas reinhardtii])

HSP 1 Score: 69.7 bits (169), Expect = 1.200e-8
Identity = 33/93 (35.48%), Postives = 50/93 (53.76%), Query Frame = 0 
Query:  102 EVIQSKGVERPLVLRFHASWCSACKKFAPSWQQTANAYNGHFDFVDVDVTGKRDIITEMGLTVLPHSHFYKAGSKIEDF-GVSVKKLNALLER 194
            ++ + K   +P+V+ F A+WC  CK  AP ++  +N Y G   F+ VDV     +    G+T +P  H YK G K +D  G S  KL AL+ +
Sbjct:   17 QLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMPTFHVYKDGVKADDLVGASQDKLKALVAK 109
[Close]
BLAST of NO28G01690 vs. NCBI_GenBank
Match: XP_007686189.1 (hypothetical protein COCMIDRAFT_90600 [Bipolaris oryzae ATCC 44560] >EUC47305.1 hypothetical protein COCMIDRAFT_90600 [Bipolaris oryzae ATCC 44560])

HSP 1 Score: 68.6 bits (166), Expect = 2.600e-8
Identity = 33/84 (39.29%), Postives = 53/84 (63.10%), Query Frame = 0 
Query:  113 LVLRFHASWCSACKKFAPSWQQTANAYN--GHFDFVDVDVTGKRDIITEMGLTVLPHSHFYKAGSKIEDF-GVSVKKLNALLER 194
            L+  F+A+WC  CK+ AP + Q +NA++  G F FV V+V  +R+I  + G+T +P    +K G KIE+  G  V+ L A++E+
Sbjct:   21 LIADFYATWCPPCKQIAPVYNQFSNAHSVPGKFAFVKVNVDEQREIAGQYGVTAMPTFMLFKDGKKIEEVRGADVRGLKAMVEK 104
[Close]
BLAST of NO28G01690 vs. NCBI_GenBank
Match: XP_014554001.1 (hypothetical protein COCVIDRAFT_106062 [Bipolaris victoriae FI3] >EUN24424.1 hypothetical protein COCVIDRAFT_106062 [Bipolaris victoriae FI3])

HSP 1 Score: 68.2 bits (165), Expect = 3.400e-8
Identity = 31/84 (36.90%), Postives = 52/84 (61.90%), Query Frame = 0 
Query:  113 LVLRFHASWCSACKKFAPSWQQTANAYN--GHFDFVDVDVTGKRDIITEMGLTVLPHSHFYKAGSKIEDF-GVSVKKLNALLER 194
            L+  F+A+WC  CK+ AP + Q +N Y+  G F FV ++V  +R+I  + G+T +P    +K G K+E+  G  V+ L A++E+
Sbjct:   21 LIADFYATWCPPCKQIAPVYNQFSNTYSVPGKFAFVKINVDEQREIAGQYGVTAMPTFMLFKDGKKVEEVRGADVRGLKAMVEK 104
[Close]
BLAST of NO28G01690 vs. NCBI_GenBank
Match: XP_024144173.1 (thioredoxin-like [Oryzias melastigma])

HSP 1 Score: 67.8 bits (164), Expect = 4.400e-8
Identity = 33/106 (31.13%), Postives = 59/106 (55.66%), Query Frame = 0 
Query:   91 IGHVDSLEGLREVIQSKGVERPLVLRFHASWCSACKKFAPSWQQ-TANAYNGHFDFVDVDVTGKRDIITEMGLTVLPHSHFYKAGSKIEDF-GVSVKKLNALLERL 195
            +  V +L   +++++  G  + +V+ F A+WC  C++ +P +++ +    N +  F+ VDV    D+    G+  +P  HFYK G K+E+F G   KKL  LL +L
Sbjct:    2 VREVTTLGEFKKILEESG-NKLVVVDFTATWCGPCRRISPIFEKMSKEPENNNVVFLKVDVDEADDVSRHCGIRCMPTFHFYKGGKKVEEFSGADEKKLKELLTKL 106
[Close]
BLAST of NO28G01690 vs. NCBI_GenBank
Match: BAK82164.1 (thioredoxin 2 [Sebastes schlegelii])

HSP 1 Score: 66.6 bits (161), Expect = 9.900e-8
Identity = 35/105 (33.33%), Postives = 57/105 (54.29%), Query Frame = 0 
Query:   91 IGHVDSLEGLREVIQSKGVERPLVLRFHASWCSACKKFAPSW-QQTANAYNGHFDFVDVDVTGKRDIITEMGLTVLPHSHFYKAGSKIEDFGVSVKKLNALLERL 195
            +  V SL   + +++ +  +R +V+ F A+WC  CK   P + QQ A   N +  F+ VDV    D+ +  G+  +P  HFYK G K+ +F  + K  + LLE+L
Sbjct:    2 VREVTSLAEFQSILKEEAGDRLVVVDFTATWCGPCKIIGPIFEQQAAKPENKNVLFLKVDVDEADDVSSHCGINCMPTFHFYKNGEKVFEFSGANK--DTLLEKL 104
The following BLAST results are available for this feature:
BLAST of NO28G01690 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM20645.14.200e-4372.81thioredoxin [Nannochloropsis gaditana][more]
XP_005855071.13.000e-4176.19thioredoxin, partial [Nannochloropsis gaditana CCM... [more]
XP_005717116.13.600e-1031.13thioredoxin domain containing protein [Chondrus cr... [more]
1EP8_A8.900e-935.48Chain A, Crystal Structure Of A Mutated Thioredoxi... [more]
1EP7_A1.200e-835.48Chain A, Crystal Structure Of Wt Thioredoxin H Fro... [more]
XP_001694574.11.200e-835.48thioredoxin h1 [Chlamydomonas reinhardtii] >P80028... [more]
XP_007686189.12.600e-839.29hypothetical protein COCMIDRAFT_90600 [Bipolaris o... [more]
XP_014554001.13.400e-836.90hypothetical protein COCVIDRAFT_106062 [Bipolaris ... [more]
XP_024144173.14.400e-831.13thioredoxin-like [Oryzias melastigma][more]
BAK82164.19.900e-833.33thioredoxin 2 [Sebastes schlegelii][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR087ncniR087Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR101ngnoR101Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO28G01690.1NO28G01690.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100228g4gene9763Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO28G01690.1NO28G01690.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO28G01690 ID=NO28G01690|Name=NO28G01690|organism=Nannochloropsis oceanica|type=gene|length=1322bp
ATGGCACCGCCCTATAGGAGAAGGCTTTCTTTCCTTCCGTCTTACTTTCG
CCCCCTCTTCTCCTCGTCTTTCCTCCTGCTCCTCCCCCTCGTGTCAACAA
CCGCCTTCCTCCTCCCTTCTTCCCTCCCGTCATCCTCCTCCTCCTCCTTT
TCATCTCTTGCCCAAACACGCTGGCGGCAGCAGCTGCAACAGCCGCATCG
GCCGCAGCAGCCACCAAGATGGACGGGACGGGCTGGCACCGTTGTCTTTG
CAGGGGATGACAGCGTCGAAATAGGGgtaagaaaggagcgagggggggaa
gggggagaagaccgagaagcattcactttcgtggttggatggtgtatctg
cttcatagatgattgtgaagctgctgttgctgccgcaacttcttatggct
cacacccctccctctccccctctcttccttcctccttccctccctcccta
gCACGTCGATAGCCTGGAAGGACTGCGGGAAGTGATCCAAAGCAAGGGCG
TGGAGAGACCGTTAGTTCTCAGGTTCCATGCGTCATGGTGCTCGgtaagg
agaaagcgaaggagaaatgggaagtggcagcatgttcaacgacgccccac
cactccctacagcccttccctccctccctccccctcaccctccaggccgg
ctatcaattcccccctgactgattaacctctcgggcaactcccctctttc
cctccccccttttctccttttctcctttccttcctccctgtagGCTTGCA
AGAAGTTTGCGCCCAGCTGGCAACAGACAGCTAACGCTTACAACGGCCAC
TTTGATTTCGTGGACGTTGACGTAACGgtatggaagtgaagggagggagg
gagggagaaaagaagggagagggagagagggagggagggaagaagtcagg
gagcttcacgtgacattacgagaggctggatcttgcataggaggaggtat
ctcatccctccctccctccctccctccctcccttttcagGGCAAGCGGGA
CATCATCACTGAAATGGGCCTGACCGTCCTACCGCACTCACACTTCTATA
AGGCGGGGAGTAAGATAGAAGATTTTGGGGTCTCGGTAAAGAAGCTGAAT
gtatgtagccctccctccctccctccctccctccctccatcgctcgcttc
aagaaatgcatttatgaaggggaagacacccccgcagataaaatttataa
gagcaatcaaagttctcattattcacatcctattccccccctctccccct
ccttcactccctccttccctcggcgcgtggcagGCGTTGCTAGAACGCCT
GGATAAGTATAAAGATGGGTGA
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protein sequence of NO28G01690.1

>NO28G01690.1-protein ID=NO28G01690.1-protein|Name=NO28G01690.1|organism=Nannochloropsis oceanica|type=polypeptide|length=201bp
MAPPYRRRLSFLPSYFRPLFSSSFLLLLPLVSTTAFLLPSSLPSSSSSSF
SSLAQTRWRQQLQQPHRPQQPPRWTGRAGTVVFAGDDSVEIGHVDSLEGL
REVIQSKGVERPLVLRFHASWCSACKKFAPSWQQTANAYNGHFDFVDVDV
TGKRDIITEMGLTVLPHSHFYKAGSKIEDFGVSVKKLNALLERLDKYKDG
*
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Synonyms
Publications