NO28G01690.1, NO28G01690.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO28G01690.1
Unique NameNO28G01690.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length603
Alignment locationchr28:527286..528607 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:527286..528607 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO28G01690.1 vs.
Match: EWM20645.1 (thioredoxin [Nannochloropsis gaditana])

HSP 1 Score: 179.9 bits (455), Expect = 8.000e-42
Identity = 105/199 (52.76%), Postives = 126/199 (63.32%), Query Frame = 0 
Query:    1 MAPPYRRRLSFLPSYFRPLFSSSFLLLLPLVSTTAFL-LPSSLPSSSSSSFSSLAQTRWRQQLQQPHRPQQPPRWTGRAGTVVFAGDDSVEIGHVDSLEGLREVIQSKGVERPLVLRFHASWCSACKKFAPSWQQTANAYNGHFDFVDVDVTGKRDIITEMGLTVLPHSHFYKAGSKIEDFGVSVKKLNALLERLDKYK 199
            MAPP RRRL  L    R +  +    L+ L +  AFL    S    ++   ++L   + +  L  P R     R   R       G++   IG + +LE L   IQ+ G  +PLVLRFHASWCSACK+FAP+WQQT NAY  +FDFVDVDVTGKRDII  MGLTVLPHSHFY  GSK+EDFGVS+KKLN LLERLDKYK
Sbjct:    1 MAPPGRRRLVIL---LRLIMGA----LVSLATCQAFLGFSYSSQRIATPGSTALRMHQLQPLLNTPLRFGCGSRRVLRLFAGEKGGEEDALIGDIATLEELEAAIQTSGTTKPLVLRFHASWCSACKRFAPTWQQTVNAYEEYFDFVDVDVTGKRDIIMAMGLTVLPHSHFYVGGSKVEDFGVSIKKLNGLLERLDKYK 192
The following BLAST results are available for this feature:
BLAST of NO28G01690.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20645.18.000e-4252.76thioredoxin [Nannochloropsis gaditana][more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO28G01690NO28G01690Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO28G01690.1NO28G01690.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO28G01690.1.cds1NO28G01690.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01690.1.cds2NO28G01690.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01690.1.cds3NO28G01690.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01690.1.cds4NO28G01690.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01690.1.cds5NO28G01690.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO28G01690.1 ID=NO28G01690.1|Name=NO28G01690.1|organism=Nannochloropsis oceanica|type=mRNA|length=603bp
ATGGCACCGCCCTATAGGAGAAGGCTTTCTTTCCTTCCGTCTTACTTTCG
CCCCCTCTTCTCCTCGTCTTTCCTCCTGCTCCTCCCCCTCGTGTCAACAA
CCGCCTTCCTCCTCCCTTCTTCCCTCCCGTCATCCTCCTCCTCCTCCTTT
TCATCTCTTGCCCAAACACGCTGGCGGCAGCAGCTGCAACAGCCGCATCG
GCCGCAGCAGCCACCAAGATGGACGGGACGGGCTGGCACCGTTGTCTTTG
CAGGGGATGACAGCGTCGAAATAGGGCACGTCGATAGCCTGGAAGGACTG
CGGGAAGTGATCCAAAGCAAGGGCGTGGAGAGACCGTTAGTTCTCAGGTT
CCATGCGTCATGGTGCTCGGCTTGCAAGAAGTTTGCGCCCAGCTGGCAAC
AGACAGCTAACGCTTACAACGGCCACTTTGATTTCGTGGACGTTGACGTA
ACGGGCAAGCGGGACATCATCACTGAAATGGGCCTGACCGTCCTACCGCA
CTCACACTTCTATAAGGCGGGGAGTAAGATAGAAGATTTTGGGGTCTCGG
TAAAGAAGCTGAATGCGTTGCTAGAACGCCTGGATAAGTATAAAGATGGG
TGA
back to top

protein sequence of NO28G01690.1

>NO28G01690.1-protein ID=NO28G01690.1-protein|Name=NO28G01690.1|organism=Nannochloropsis oceanica|type=polypeptide|length=201bp
MAPPYRRRLSFLPSYFRPLFSSSFLLLLPLVSTTAFLLPSSLPSSSSSSF
SSLAQTRWRQQLQQPHRPQQPPRWTGRAGTVVFAGDDSVEIGHVDSLEGL
REVIQSKGVERPLVLRFHASWCSACKKFAPSWQQTANAYNGHFDFVDVDV
TGKRDIITEMGLTVLPHSHFYKAGSKIEDFGVSVKKLNALLERLDKYKDG
*
back to top

mRNA from alignment at chr28:527286..528607+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO28G01690.1 ID=NO28G01690.1|Name=NO28G01690.1|organism=Nannochloropsis oceanica|type=mRNA|length=1322bp|location=Sequence derived from alignment at chr28:527286..528607+ (Nannochloropsis oceanica)
ATGGCACCGCCCTATAGGAGAAGGCTTTCTTTCCTTCCGTCTTACTTTCG
CCCCCTCTTCTCCTCGTCTTTCCTCCTGCTCCTCCCCCTCGTGTCAACAA
CCGCCTTCCTCCTCCCTTCTTCCCTCCCGTCATCCTCCTCCTCCTCCTTT
TCATCTCTTGCCCAAACACGCTGGCGGCAGCAGCTGCAACAGCCGCATCG
GCCGCAGCAGCCACCAAGATGGACGGGACGGGCTGGCACCGTTGTCTTTG
CAGGGGATGACAGCGTCGAAATAGGGGTAAGAAAGGAGCGAGGGGGGGAA
GGGGGAGAAGACCGAGAAGCATTCACTTTCGTGGTTGGATGGTGTATCTG
CTTCATAGATGATTGTGAAGCTGCTGTTGCTGCCGCAACTTCTTATGGCT
CACACCCCTCCCTCTCCCCCTCTCTTCCTTCCTCCTTCCCTCCCTCCCTA
GCACGTCGATAGCCTGGAAGGACTGCGGGAAGTGATCCAAAGCAAGGGCG
TGGAGAGACCGTTAGTTCTCAGGTTCCATGCGTCATGGTGCTCGGTAAGG
AGAAAGCGAAGGAGAAATGGGAAGTGGCAGCATGTTCAACGACGCCCCAC
CACTCCCTACAGCCCTTCCCTCCCTCCCTCCCCCTCACCCTCCAGGCCGG
CTATCAATTCCCCCCTGACTGATTAACCTCTCGGGCAACTCCCCTCTTTC
CCTCCCCCCTTTTCTCCTTTTCTCCTTTCCTTCCTCCCTGTAGGCTTGCA
AGAAGTTTGCGCCCAGCTGGCAACAGACAGCTAACGCTTACAACGGCCAC
TTTGATTTCGTGGACGTTGACGTAACGGTATGGAAGTGAAGGGAGGGAGG
GAGGGAGAAAAGAAGGGAGAGGGAGAGAGGGAGGGAGGGAAGAAGTCAGG
GAGCTTCACGTGACATTACGAGAGGCTGGATCTTGCATAGGAGGAGGTAT
CTCATCCCTCCCTCCCTCCCTCCCTCCCTCCCTTTTCAGGGCAAGCGGGA
CATCATCACTGAAATGGGCCTGACCGTCCTACCGCACTCACACTTCTATA
AGGCGGGGAGTAAGATAGAAGATTTTGGGGTCTCGGTAAAGAAGCTGAAT
GTATGTAGCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCATCGCTCGCTTC
AAGAAATGCATTTATGAAGGGGAAGACACCCCCGCAGATAAAATTTATAA
GAGCAATCAAAGTTCTCATTATTCACATCCTATTCCCCCCCTCTCCCCCT
CCTTCACTCCCTCCTTCCCTCGGCGCGTGGCAGGCGTTGCTAGAACGCCT
GGATAAGTATAAAGATGGGTGA
back to top

Coding sequence (CDS) from alignment at chr28:527286..528607+

>NO28G01690.1 ID=NO28G01690.1|Name=NO28G01690.1|organism=Nannochloropsis oceanica|type=CDS|length=603bp|location=Sequence derived from alignment at chr28:527286..528607+ (Nannochloropsis oceanica)
ATGGCACCGCCCTATAGGAGAAGGCTTTCTTTCCTTCCGTCTTACTTTCG
CCCCCTCTTCTCCTCGTCTTTCCTCCTGCTCCTCCCCCTCGTGTCAACAA
CCGCCTTCCTCCTCCCTTCTTCCCTCCCGTCATCCTCCTCCTCCTCCTTT
TCATCTCTTGCCCAAACACGCTGGCGGCAGCAGCTGCAACAGCCGCATCG
GCCGCAGCAGCCACCAAGATGGACGGGACGGGCTGGCACCGTTGTCTTTG
CAGGGGATGACAGCGTCGAAATAGGGCACGTCGATAGCCTGGAAGGACTG
CGGGAAGTGATCCAAAGCAAGGGCGTGGAGAGACCGTTAGTTCTCAGGTT
CCATGCGTCATGGTGCTCGGCTTGCAAGAAGTTTGCGCCCAGCTGGCAAC
AGACAGCTAACGCTTACAACGGCCACTTTGATTTCGTGGACGTTGACGTA
ACGGGCAAGCGGGACATCATCACTGAAATGGGCCTGACCGTCCTACCGCA
CTCACACTTCTATAAGGCGGGGAGTAAGATAGAAGATTTTGGGGTCTCGG
TAAAGAAGCTGAATGCGTTGCTAGAACGCCTGGATAAGTATAAAGATGGG
TGA
back to top
Synonyms
Publications