NO28G01610, NO28G01610 (gene) Nannochloropsis oceanica

Overview
NameNO28G01610
Unique NameNO28G01610
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1831
Alignment locationchr28:507128..508958 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:507128..508958 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO28G01610 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ngnoR101ngnoR101Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO28G01610.1NO28G01610.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO28G01610.1NO28G01610.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO28G01610 ID=NO28G01610|Name=NO28G01610|organism=Nannochloropsis oceanica|type=gene|length=1831bp
ATGCCCCTCACGACCCGCCCGCCTAATACGCTCAAGCCCAAGAATGAGGC
AAAGGGAGGCAAGGACCACAAAGAAGGGGAAAGCCGCCCCCTCTCCCCCT
CCCCCTCATCCTCTTCTTCCTGCTCCTCCTCTTCTTCTTCTTCTTCTTCT
TCTTCCTCCTTCTCCTCTTCCCCCTCCAGCAATTTGAGTGGCACCATGAG
CATCAGGAGGGATAGTAGTAGCAGCAGCAGTGTCCTGCATGAAACGACGG
CTGTTTTCGATTACCCTGCAGACGATACCTTCCCGGCCTTCACCTTTCCC
AACGCCACAGCGGCTACCACTCTAAGTCGGACGAGGAACACAAAGGCGAG
GGTGTTGATTGGCGGTATACGCAGCAGTGATAGAGAGACGGACGATAGAG
GGAAAGGGCTGGGGGGAGGAGGACGAGGAGGAGGACGAGGAGGAGGACGA
GGAGGAGGACGAGGAGGAGGACGAGGAGGAGGAGGACAAAGAGGAGGAGG
TGGTGGACGACGAGAAGAAGGAGGAGAAGGAGGAGAAGGAGGAGATGGAG
GAGGCAAAGGAAAAGTGATGACAGAAGAAGCAGGAAGAAGAGGAGGAAGG
GGGAGAGGAAGGGGAGAAGGAAGAGGAAATCATGTCATTCGGGGTTTGCT
CAAGGGCACCGCTCCTTCCCTCAAGTCCGAGGTGCGGGAGAGGAGACATT
TGCCCCCCCTCTTTCTCTCTTCAGCCTCCTCCTCCTCCTCCTCCTTCTCT
CCTTCCTCCTCCTCTCTCTTTTCTCCCTCCTCTTCCTCTCCTTCTCCTCT
GACACCTACCATTCCCAGTAGAAGCAACTGCAACAACAACAGCAGCGTGC
AAGGTCGCCCCCTTCACCCTCCTCCCCCCTCTCTCCCTCCTCCTCCTCCT
CCTCCTCCCCCTCCTCCTCTTCCTCATCGTCCATCTCTCCCTCCTCTCTC
TCACCTCTCCTCCTCGGCGAATGCCTCGGGTGGAACCATCTTGCCGTCCC
TCCCTTCCCGCATATCCACAACCACTACCAGCAATAGCAACAGTAGCAGC
AGCAGTAGCAGCAGCAGCGCTAGTAACAGCATGATAGCGATATCATTGAC
CGGAGGAGAAGGAGGGAGAGGGGGAGGAAGAGTCGGAGGGGGAGGAGAGA
GAGGAGAGAGGGGGGAGGAAGAGGAGGAGGGAGGGGCATCTCCAACCTCA
CCACCAGCACCAGCACCAGCAGCACCAGCACCAGCAGCACCAGCAGCACC
AGCAGCAGCACCAGCAGCACCAGCAGCACCAGCAGCAGCGGCACCAGCAG
CAGCAGCGGCACTCGTGGTAGCAAGGTTTTATTTGGGCGTATGGCGAATG
TGCAGGGCAGCCTAGTCTCACAAAACAGACAGCTGGCGTCTGAACTGgtg
gggagggatggacggagggaaggagggagcgagggagggagcgagggaga
gtgtgagggagggagggagggaaggtggttacctaatgcatgcatttata
tcgccacagaggagcatttctccttccttcgcaccctcaaactctaaaaa
aaaacacaaaagctcacttactactcgatctttcgtcgccatctcaacca
cctccctccctccctccctccctccctccctatcagTCAGAAGCCCGAGA
AGATGCCAAAGAACATGAAAAAAAACACCGAGAGCTTCGGTGGGCGCTCC
TCAAGGCCAGCCTCGAGATCGAACACCTAAGGAAAGCCACCCTCCTTCGC
ACCCTCCCTTCTTTCCTTCCCCCTTCCCTTCCTTCCTCCCGTTGGATGGA
AGACAAGGCGACGCAATCCTCCTTCCCTCCC
back to top

protein sequence of NO28G01610.1

>NO28G01610.1-protein ID=NO28G01610.1-protein|Name=NO28G01610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=455bp
MPLTTRPPNTLKPKNEAKGGKDHKEGESRPLSPSPSSSSSCSSSSSSSSS
SSSFSSSPSSNLSGTMSIRRDSSSSSSVLHETTAVFDYPADDTFPAFTFP
NATAATTLSRTRNTKARVLIGGIRSSDRETDDRGKGLGGGGRGGGRGGGR
GGGRGGGRGGGGQRGGGGGRREEGGEGGEGGDGGGKGKVMTEEAGRRGGR
GRGRGEGRGNHVIRGLLKGTAPSLKSEVRERRHLPPLFLSSASSSSSSFS
PSSSSLFSPSSSSPSPLTPTIPSRSNCNNNSSVQGRPLHPPPPSLPPPPP
PPPPPPLPHRPSLPPLSHLSSSANASGGTILPSLPSRISTTTTSNSNSSS
SSSSSSASNSMIAISLTGGEGGRGGGRVGGGGERGERGEEEEEGGASPTS
PPAPAPAAPAPAAPAAPAAAPAAPAAPAAAAPAAAAALVVARFYLGVWRM
CRAA*
back to top
Synonyms
Publications