NO28G01610.1, NO28G01610.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO28G01610.1
Unique NameNO28G01610.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1592
Alignment locationchr28:507128..508958 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:507128..508958 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO28G01610.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO28G01610NO28G01610Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO28G01610.1NO28G01610.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO28G01610.1.cds1NO28G01610.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO28G01610.1 ID=NO28G01610.1|Name=NO28G01610.1|organism=Nannochloropsis oceanica|type=mRNA|length=1592bp
ATGCCCCTCACGACCCGCCCGCCTAATACGCTCAAGCCCAAGAATGAGGC
AAAGGGAGGCAAGGACCACAAAGAAGGGGAAAGCCGCCCCCTCTCCCCCT
CCCCCTCATCCTCTTCTTCCTGCTCCTCCTCTTCTTCTTCTTCTTCTTCT
TCTTCCTCCTTCTCCTCTTCCCCCTCCAGCAATTTGAGTGGCACCATGAG
CATCAGGAGGGATAGTAGTAGCAGCAGCAGTGTCCTGCATGAAACGACGG
CTGTTTTCGATTACCCTGCAGACGATACCTTCCCGGCCTTCACCTTTCCC
AACGCCACAGCGGCTACCACTCTAAGTCGGACGAGGAACACAAAGGCGAG
GGTGTTGATTGGCGGTATACGCAGCAGTGATAGAGAGACGGACGATAGAG
GGAAAGGGCTGGGGGGAGGAGGACGAGGAGGAGGACGAGGAGGAGGACGA
GGAGGAGGACGAGGAGGAGGACGAGGAGGAGGAGGACAAAGAGGAGGAGG
TGGTGGACGACGAGAAGAAGGAGGAGAAGGAGGAGAAGGAGGAGATGGAG
GAGGCAAAGGAAAAGTGATGACAGAAGAAGCAGGAAGAAGAGGAGGAAGG
GGGAGAGGAAGGGGAGAAGGAAGAGGAAATCATGTCATTCGGGGTTTGCT
CAAGGGCACCGCTCCTTCCCTCAAGTCCGAGGTGCGGGAGAGGAGACATT
TGCCCCCCCTCTTTCTCTCTTCAGCCTCCTCCTCCTCCTCCTCCTTCTCT
CCTTCCTCCTCCTCTCTCTTTTCTCCCTCCTCTTCCTCTCCTTCTCCTCT
GACACCTACCATTCCCAGTAGAAGCAACTGCAACAACAACAGCAGCGTGC
AAGGTCGCCCCCTTCACCCTCCTCCCCCCTCTCTCCCTCCTCCTCCTCCT
CCTCCTCCCCCTCCTCCTCTTCCTCATCGTCCATCTCTCCCTCCTCTCTC
TCACCTCTCCTCCTCGGCGAATGCCTCGGGTGGAACCATCTTGCCGTCCC
TCCCTTCCCGCATATCCACAACCACTACCAGCAATAGCAACAGTAGCAGC
AGCAGTAGCAGCAGCAGCGCTAGTAACAGCATGATAGCGATATCATTGAC
CGGAGGAGAAGGAGGGAGAGGGGGAGGAAGAGTCGGAGGGGGAGGAGAGA
GAGGAGAGAGGGGGGAGGAAGAGGAGGAGGGAGGGGCATCTCCAACCTCA
CCACCAGCACCAGCACCAGCAGCACCAGCACCAGCAGCACCAGCAGCACC
AGCAGCAGCACCAGCAGCACCAGCAGCACCAGCAGCAGCGGCACCAGCAG
CAGCAGCGGCACTCGTGGTAGCAAGGTTTTATTTGGGCGTATGGCGAATG
TGCAGGGCAGCCTAGTCTCACAAAACAGACAGCTGGCGTCTGAACTGTCA
GAAGCCCGAGAAGATGCCAAAGAACATGAAAAAAAACACCGAGAGCTTCG
GTGGGCGCTCCTCAAGGCCAGCCTCGAGATCGAACACCTAAGGAAAGCCA
CCCTCCTTCGCACCCTCCCTTCTTTCCTTCCCCCTTCCCTTCCTTCCTCC
CGTTGGATGGAAGACAAGGCGACGCAATCCTCCTTCCCTCCC
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protein sequence of NO28G01610.1

>NO28G01610.1-protein ID=NO28G01610.1-protein|Name=NO28G01610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=455bp
MPLTTRPPNTLKPKNEAKGGKDHKEGESRPLSPSPSSSSSCSSSSSSSSS
SSSFSSSPSSNLSGTMSIRRDSSSSSSVLHETTAVFDYPADDTFPAFTFP
NATAATTLSRTRNTKARVLIGGIRSSDRETDDRGKGLGGGGRGGGRGGGR
GGGRGGGRGGGGQRGGGGGRREEGGEGGEGGDGGGKGKVMTEEAGRRGGR
GRGRGEGRGNHVIRGLLKGTAPSLKSEVRERRHLPPLFLSSASSSSSSFS
PSSSSLFSPSSSSPSPLTPTIPSRSNCNNNSSVQGRPLHPPPPSLPPPPP
PPPPPPLPHRPSLPPLSHLSSSANASGGTILPSLPSRISTTTTSNSNSSS
SSSSSSASNSMIAISLTGGEGGRGGGRVGGGGERGERGEEEEEGGASPTS
PPAPAPAAPAPAAPAAPAAAPAAPAAPAAAAPAAAAALVVARFYLGVWRM
CRAA*
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mRNA from alignment at chr28:507128..508958-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO28G01610.1 ID=NO28G01610.1|Name=NO28G01610.1|organism=Nannochloropsis oceanica|type=mRNA|length=1831bp|location=Sequence derived from alignment at chr28:507128..508958- (Nannochloropsis oceanica)
ATGCCCCTCACGACCCGCCCGCCTAATACGCTCAAGCCCAAGAATGAGGC
AAAGGGAGGCAAGGACCACAAAGAAGGGGAAAGCCGCCCCCTCTCCCCCT
CCCCCTCATCCTCTTCTTCCTGCTCCTCCTCTTCTTCTTCTTCTTCTTCT
TCTTCCTCCTTCTCCTCTTCCCCCTCCAGCAATTTGAGTGGCACCATGAG
CATCAGGAGGGATAGTAGTAGCAGCAGCAGTGTCCTGCATGAAACGACGG
CTGTTTTCGATTACCCTGCAGACGATACCTTCCCGGCCTTCACCTTTCCC
AACGCCACAGCGGCTACCACTCTAAGTCGGACGAGGAACACAAAGGCGAG
GGTGTTGATTGGCGGTATACGCAGCAGTGATAGAGAGACGGACGATAGAG
GGAAAGGGCTGGGGGGAGGAGGACGAGGAGGAGGACGAGGAGGAGGACGA
GGAGGAGGACGAGGAGGAGGACGAGGAGGAGGAGGACAAAGAGGAGGAGG
TGGTGGACGACGAGAAGAAGGAGGAGAAGGAGGAGAAGGAGGAGATGGAG
GAGGCAAAGGAAAAGTGATGACAGAAGAAGCAGGAAGAAGAGGAGGAAGG
GGGAGAGGAAGGGGAGAAGGAAGAGGAAATCATGTCATTCGGGGTTTGCT
CAAGGGCACCGCTCCTTCCCTCAAGTCCGAGGTGCGGGAGAGGAGACATT
TGCCCCCCCTCTTTCTCTCTTCAGCCTCCTCCTCCTCCTCCTCCTTCTCT
CCTTCCTCCTCCTCTCTCTTTTCTCCCTCCTCTTCCTCTCCTTCTCCTCT
GACACCTACCATTCCCAGTAGAAGCAACTGCAACAACAACAGCAGCGTGC
AAGGTCGCCCCCTTCACCCTCCTCCCCCCTCTCTCCCTCCTCCTCCTCCT
CCTCCTCCCCCTCCTCCTCTTCCTCATCGTCCATCTCTCCCTCCTCTCTC
TCACCTCTCCTCCTCGGCGAATGCCTCGGGTGGAACCATCTTGCCGTCCC
TCCCTTCCCGCATATCCACAACCACTACCAGCAATAGCAACAGTAGCAGC
AGCAGTAGCAGCAGCAGCGCTAGTAACAGCATGATAGCGATATCATTGAC
CGGAGGAGAAGGAGGGAGAGGGGGAGGAAGAGTCGGAGGGGGAGGAGAGA
GAGGAGAGAGGGGGGAGGAAGAGGAGGAGGGAGGGGCATCTCCAACCTCA
CCACCAGCACCAGCACCAGCAGCACCAGCACCAGCAGCACCAGCAGCACC
AGCAGCAGCACCAGCAGCACCAGCAGCACCAGCAGCAGCGGCACCAGCAG
CAGCAGCGGCACTCGTGGTAGCAAGGTTTTATTTGGGCGTATGGCGAATG
TGCAGGGCAGCCTAGTCTCACAAAACAGACAGCTGGCGTCTGAACTGGTG
GGGAGGGATGGACGGAGGGAAGGAGGGAGCGAGGGAGGGAGCGAGGGAGA
GTGTGAGGGAGGGAGGGAGGGAAGGTGGTTACCTAATGCATGCATTTATA
TCGCCACAGAGGAGCATTTCTCCTTCCTTCGCACCCTCAAACTCTAAAAA
AAAACACAAAAGCTCACTTACTACTCGATCTTTCGTCGCCATCTCAACCA
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTATCAGTCAGAAGCCCGAGA
AGATGCCAAAGAACATGAAAAAAAACACCGAGAGCTTCGGTGGGCGCTCC
TCAAGGCCAGCCTCGAGATCGAACACCTAAGGAAAGCCACCCTCCTTCGC
ACCCTCCCTTCTTTCCTTCCCCCTTCCCTTCCTTCCTCCCGTTGGATGGA
AGACAAGGCGACGCAATCCTCCTTCCCTCCC
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Coding sequence (CDS) from alignment at chr28:507128..508958-

>NO28G01610.1 ID=NO28G01610.1|Name=NO28G01610.1|organism=Nannochloropsis oceanica|type=CDS|length=1365bp|location=Sequence derived from alignment at chr28:507128..508958- (Nannochloropsis oceanica)
ATGCCCCTCACGACCCGCCCGCCTAATACGCTCAAGCCCAAGAATGAGGC
AAAGGGAGGCAAGGACCACAAAGAAGGGGAAAGCCGCCCCCTCTCCCCCT
CCCCCTCATCCTCTTCTTCCTGCTCCTCCTCTTCTTCTTCTTCTTCTTCT
TCTTCCTCCTTCTCCTCTTCCCCCTCCAGCAATTTGAGTGGCACCATGAG
CATCAGGAGGGATAGTAGTAGCAGCAGCAGTGTCCTGCATGAAACGACGG
CTGTTTTCGATTACCCTGCAGACGATACCTTCCCGGCCTTCACCTTTCCC
AACGCCACAGCGGCTACCACTCTAAGTCGGACGAGGAACACAAAGGCGAG
GGTGTTGATTGGCGGTATACGCAGCAGTGATAGAGAGACGGACGATAGAG
GGAAAGGGCTGGGGGGAGGAGGACGAGGAGGAGGACGAGGAGGAGGACGA
GGAGGAGGACGAGGAGGAGGACGAGGAGGAGGAGGACAAAGAGGAGGAGG
TGGTGGACGACGAGAAGAAGGAGGAGAAGGAGGAGAAGGAGGAGATGGAG
GAGGCAAAGGAAAAGTGATGACAGAAGAAGCAGGAAGAAGAGGAGGAAGG
GGGAGAGGAAGGGGAGAAGGAAGAGGAAATCATGTCATTCGGGGTTTGCT
CAAGGGCACCGCTCCTTCCCTCAAGTCCGAGGTGCGGGAGAGGAGACATT
TGCCCCCCCTCTTTCTCTCTTCAGCCTCCTCCTCCTCCTCCTCCTTCTCT
CCTTCCTCCTCCTCTCTCTTTTCTCCCTCCTCTTCCTCTCCTTCTCCTCT
GACACCTACCATTCCCAGTAGAAGCAACTGCAACAACAACAGCAGCGTGC
AAGGTCGCCCCCTTCACCCTCCTCCCCCCTCTCTCCCTCCTCCTCCTCCT
CCTCCTCCCCCTCCTCCTCTTCCTCATCGTCCATCTCTCCCTCCTCTCTC
TCACCTCTCCTCCTCGGCGAATGCCTCGGGTGGAACCATCTTGCCGTCCC
TCCCTTCCCGCATATCCACAACCACTACCAGCAATAGCAACAGTAGCAGC
AGCAGTAGCAGCAGCAGCGCTAGTAACAGCATGATAGCGATATCATTGAC
CGGAGGAGAAGGAGGGAGAGGGGGAGGAAGAGTCGGAGGGGGAGGAGAGA
GAGGAGAGAGGGGGGAGGAAGAGGAGGAGGGAGGGGCATCTCCAACCTCA
CCACCAGCACCAGCACCAGCAGCACCAGCACCAGCAGCACCAGCAGCACC
AGCAGCAGCACCAGCAGCACCAGCAGCACCAGCAGCAGCGGCACCAGCAG
CAGCAGCGGCACTCGTGGTAGCAAGGTTTTATTTGGGCGTATGGCGAATG
TGCAGGGCAGCCTAG
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Synonyms
Publications