NO28G01560, NO28G01560 (gene) Nannochloropsis oceanica

Overview
NameNO28G01560
Unique NameNO28G01560
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1923
Alignment locationchr28:496347..498269 +

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Properties
Property NameValue
Description3-isopropylmalate dehydratase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:496347..498269 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR000573AconitaseA/IPMdHydase_ssu_swvl
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Homology
BLAST of NO28G01560 vs. NCBI_GenBank
Match: CBN77769.1 (3-isopropylmalate dehydratase [Ectocarpus siliculosus])

HSP 1 Score: 299.3 bits (765), Expect = 1.100e-77
Identity = 141/197 (71.57%), Postives = 169/197 (85.79%), Query Frame = 0
Query:   46 LDDPRLMEMPKFRPRPRQYKGKAFVTRDNIDTDQIIPAEYLTLVPSKIDEYEQLGAYALIGLPEALYSTRFVDPGKTKSEYPIIIGGDNFGCGSSREHAPIALGAAGTRVVIAETYARIFFRNCISTGEIYPYECPGQRLCDEISTGDEVSVDLDTDLLINHSTGKEYKLQALGDAGPVIEAGGIFPFAVKTGMIEK 243
            +DDPR+ EMPK R RP +Y G+ FV +DNIDTDQIIPAEYLTLVPS  DEYE+LG+YA+IGLP+ +Y+TR+V+ G   + YPI+I GDNFGCGSSREHAPIA+GAAGTRVV+AE+YARIFFRN I+TGE+YPYEC  +RL D  +TGD+V+VDL TD LINHSTGKEY L  LGDAGPVI AGG+FP+A+KTGMI+K
Sbjct:   58 IDDPRVKEMPKNRDRPDKYTGQCFVVKDNIDTDQIIPAEYLTLVPSNADEYEKLGSYAMIGLPD-VYTTRYVEEGSMATRYPIMIAGDNFGCGSSREHAPIAMGAAGTRVVVAESYARIFFRNSIATGELYPYECQ-ERLVDAFTTGDDVTVDLTTDTLINHSTGKEYPLNPLGDAGPVINAGGLFPYAIKTGMIKK 252          
BLAST of NO28G01560 vs. NCBI_GenBank
Match: CAQ52411.1 (3-isopropylmalate dehydratase, partial [Laminaria digitata])

HSP 1 Score: 294.7 bits (753), Expect = 2.700e-76
Identity = 141/195 (72.31%), Postives = 165/195 (84.62%), Query Frame = 0
Query:   48 DPRLMEMPKFRPRPRQYKGKAFVTRDNIDTDQIIPAEYLTLVPSKIDEYEQLGAYALIGLPEALYSTRFVDPGKTKSEYPIIIGGDNFGCGSSREHAPIALGAAGTRVVIAETYARIFFRNCISTGEIYPYECPGQRLCDEISTGDEVSVDLDTDLLINHSTGKEYKLQALGDAGPVIEAGGIFPFAVKTGMIEK 243
            DPR  EMPKFR RP +Y G  FV +DNIDTDQIIPAEYLTLVPSK DEYE+LG+YA+IGLP ++Y TRFV+ G  K++YPI+I GDNFGCGSSREHAPIALGAAG RVV+AE+YARIFFRN I+TGE+YPYEC  +RL D I TGDE++VDL TD L NH++GKEY L  LGDA PVI AGG+FPFA++TGMI+K
Sbjct:   54 DPREKEMPKFRERPTKYTGACFVVKDNIDTDQIIPAEYLTLVPSKADEYEKLGSYAMIGLP-SVYKTRFVEEGSMKTKYPIMIAGDNFGCGSSREHAPIALGAAGARVVVAESYARIFFRNSIATGELYPYECQ-ERLVDIIKTGDELTVDLSTDTLTNHASGKEYPLTPLGDAAPVINAGGLFPFAIQTGMIKK 246          
BLAST of NO28G01560 vs. NCBI_GenBank
Match: XP_001696402.1 (isopropylmalate dehydratase, small subunit [Chlamydomonas reinhardtii] >ADF43140.1 LEU1Sp [Chlamydomonas reinhardtii] >PNW81581.1 hypothetical protein CHLRE_06g252650v5 [Chlamydomonas reinhardtii])

HSP 1 Score: 272.7 bits (696), Expect = 1.100e-69
Identity = 128/183 (69.95%), Postives = 155/183 (84.70%), Query Frame = 0
Query:   61 PRQYKGKAFVTRDNIDTDQIIPAEYLTLVPSKIDEYEQLGAYALIGLPEALYSTRFVDPGKTKSEYPIIIGGDNFGCGSSREHAPIALGAAGTRVVIAETYARIFFRNCISTGEIYPYECPGQRLCDEISTGDEVSVDLDTDLLINHSTGKEYKLQALGDAGPVIEAGGIFPFAVKTGMIEKA 244
            PR  +GK FVT+DNIDTDQIIPAEYLTLVPSK DEYE+LG+YALIGLP+  Y+TR+V  G+ K+EYPIIIGG NFGCGSSREHAP+ALGAAG +V +AE+YARIFFRNCI+TGE+YP E    RLCDE+ TG EV+VD+D ++L +HSTGK Y LQ +G+AGPVI+AGGIF +A + GMI+ A
Sbjct:   33 PRVVRGKCFVTKDNIDTDQIIPAEYLTLVPSKPDEYEKLGSYALIGLPDDTYTTRYVKEGEMKTEYPIIIGGQNFGCGSSREHAPVALGAAGAKVCVAESYARIFFRNCIATGELYPCETT-VRLCDELKTGSEVTVDMDANVLTDHSTGKTYNLQEIGEAGPVIDAGGIFEYARRQGMIKTA 214          
BLAST of NO28G01560 vs. NCBI_GenBank
Match: ADF43194.1 (LEU1Sm [Chlamydomonas reinhardtii])

HSP 1 Score: 272.7 bits (696), Expect = 1.100e-69
Identity = 128/183 (69.95%), Postives = 155/183 (84.70%), Query Frame = 0
Query:   61 PRQYKGKAFVTRDNIDTDQIIPAEYLTLVPSKIDEYEQLGAYALIGLPEALYSTRFVDPGKTKSEYPIIIGGDNFGCGSSREHAPIALGAAGTRVVIAETYARIFFRNCISTGEIYPYECPGQRLCDEISTGDEVSVDLDTDLLINHSTGKEYKLQALGDAGPVIEAGGIFPFAVKTGMIEKA 244
            PR  +GK FVT+DNIDTDQIIPAEYLTLVPSK DEYE+LG+YALIGLP+  Y+TR+V  G+ K+EYPIIIGG NFGCGSSREHAP+ALGAAG +V +AE+YARIFFRNCI+TGE+YP E    RLCDE+ TG EV+VD+D ++L +HSTGK Y LQ +G+AGPVI+AGGIF +A + GMI+ A
Sbjct:   33 PRVVRGKCFVTKDNIDTDQIIPAEYLTLVPSKPDEYEKLGSYALIGLPDDTYTTRYVKDGEMKTEYPIIIGGQNFGCGSSREHAPVALGAAGAKVCVAESYARIFFRNCIATGELYPCETT-VRLCDELKTGSEVTVDMDANVLTDHSTGKTYNLQEIGEAGPVIDAGGIFEYARRQGMIKTA 214          
BLAST of NO28G01560 vs. NCBI_GenBank
Match: AAY79403.1 (isopropylmalate dehydratase [Gonium pectorale])

HSP 1 Score: 268.5 bits (685), Expect = 2.100e-68
Identity = 126/183 (68.85%), Postives = 154/183 (84.15%), Query Frame = 0
Query:   61 PRQYKGKAFVTRDNIDTDQIIPAEYLTLVPSKIDEYEQLGAYALIGLPEALYSTRFVDPGKTKSEYPIIIGGDNFGCGSSREHAPIALGAAGTRVVIAETYARIFFRNCISTGEIYPYECPGQRLCDEISTGDEVSVDLDTDLLINHSTGKEYKLQALGDAGPVIEAGGIFPFAVKTGMIEKA 244
            PR  +GK FVTRDNIDTDQIIPAEYLTLVPSK +EYE+LG+YALIGLP+ LY  R+V  G+ K+EYP+IIGG NFGCGSSREHAP++LGAAG +V +AE+YARIFFRNCI+TGE+YP E  G RLCD + TG EV+VD+D ++L +HSTGK Y LQ +G+AGPVI+AGGIF +A + GMI+ A
Sbjct:   32 PRVIRGKCFVTRDNIDTDQIIPAEYLTLVPSKPEEYEKLGSYALIGLPDDLYPERYVKEGEMKTEYPVIIGGQNFGCGSSREHAPVSLGAAGAKVCVAESYARIFFRNCIATGELYPCE-TGARLCDVLKTGTEVTVDMDKNVLTDHSTGKTYPLQEIGEAGPVIDAGGIFEYARRQGMIKVA 213          
BLAST of NO28G01560 vs. NCBI_GenBank
Match: BAU61575.1 (isopropylmalate dehydratase, small subunit [Gonium pectorale] >BAU61603.1 isopropylmalate dehydratase, small subunit [Gonium pectorale])

HSP 1 Score: 268.1 bits (684), Expect = 2.700e-68
Identity = 126/183 (68.85%), Postives = 154/183 (84.15%), Query Frame = 0
Query:   61 PRQYKGKAFVTRDNIDTDQIIPAEYLTLVPSKIDEYEQLGAYALIGLPEALYSTRFVDPGKTKSEYPIIIGGDNFGCGSSREHAPIALGAAGTRVVIAETYARIFFRNCISTGEIYPYECPGQRLCDEISTGDEVSVDLDTDLLINHSTGKEYKLQALGDAGPVIEAGGIFPFAVKTGMIEKA 244
            PR  +GK FVTRDNIDTDQIIPAEYLTLVPSK +EYE+LG+YALIGLP+ LY  R+V  G+ K+EYP+IIGG NFGCGSSREHAP++LGAAG +V +AE+YARIFFRNCI+TGE+YP E  G RLCD + TG EV+VD+D ++L +HSTGK Y LQ +G+AGPVI+AGGIF +A + GMI+ A
Sbjct:   32 PRVIRGKCFVTRDNIDTDQIIPAEYLTLVPSKPEEYEKLGSYALIGLPDDLYPERYVKEGEMKTEYPVIIGGQNFGCGSSREHAPVSLGAAGAKVCVAESYARIFFRNCIATGELYPCE-TGVRLCDVLKTGTEVTVDMDKNVLTDHSTGKTYPLQEIGEAGPVIDAGGIFEYARRQGMIKVA 213          
BLAST of NO28G01560 vs. NCBI_GenBank
Match: ADI46907.1 (LEU1Sm [Volvox carteri f. nagariensis])

HSP 1 Score: 266.5 bits (680), Expect = 8.000e-68
Identity = 124/181 (68.51%), Postives = 153/181 (84.53%), Query Frame = 0
Query:   61 PRQYKGKAFVTRDNIDTDQIIPAEYLTLVPSKIDEYEQLGAYALIGLPEALYSTRFVDPGKTKSEYPIIIGGDNFGCGSSREHAPIALGAAGTRVVIAETYARIFFRNCISTGEIYPYECPGQRLCDEISTGDEVSVDLDTDLLINHSTGKEYKLQALGDAGPVIEAGGIFPFAVKTGMIE 242
            PR  +GK FVTRDNIDTDQIIPAEYLTLVPSK DEY +LG+YALIGLP+ LY  R+V+ G+ K+ YPII+GG NFGCGSSREHAP+ALGAAG +V +AE+YARIFFRNCI+TGE+YP E P  RLCD+++TG EV+VD++ ++L +HSTG  Y LQA+G+AGPVI+AGGIF +A   GMI+
Sbjct:   39 PRVIRGKCFVTRDNIDTDQIIPAEYLTLVPSKPDEYVKLGSYALIGLPDNLYPIRYVEDGEVKTNYPIIVGGQNFGCGSSREHAPVALGAAGAKVCVAESYARIFFRNCIATGELYPCETP-VRLCDKLTTGSEVTVDMEMNILTDHSTGATYPLQAIGEAGPVIDAGGIFEYARSEGMIK 218          
BLAST of NO28G01560 vs. NCBI_GenBank
Match: PRW57149.1 (3-isopropylmalate dehydratase [Chlorella sorokiniana])

HSP 1 Score: 265.4 bits (677), Expect = 1.800e-67
Identity = 124/181 (68.51%), Postives = 153/181 (84.53%), Query Frame = 0
Query:   61 PRQYKGKAFVTRDNIDTDQIIPAEYLTLVPSKIDEYEQLGAYALIGLPEALYSTRFVDPGKTKSEYPIIIGGDNFGCGSSREHAPIALGAAGTRVVIAETYARIFFRNCISTGEIYPYECPGQRLCDEISTGDEVSVDLDTDLLINHSTGKEYKLQALGDAGPVIEAGGIFPFAVKTGMIE 242
            PR+ +GK F+T+DNIDTDQIIPAEYLTLVPSK DEYE+LG+YAL GLP+ LY TR+V+    K++YPIIIGG NFGCGSSREHAP+ALGA+G  VV+AE+YARIFFRNC+STGE+YP E    RLC+E+ TG EV VD++ D+L + +TGK+Y L+ LGDAGPVI+AGGIF FA K+GMI+
Sbjct:   42 PRKIRGKCFITKDNIDTDQIIPAEYLTLVPSKPDEYEKLGSYALCGLPDDLYPTRYVEVDSMKTDYPIIIGGQNFGCGSSREHAPVALGASGATVVVAESYARIFFRNCVSTGELYPVE-TDVRLCEELETGREVEVDMEADVLTDLTTGKKYSLKPLGDAGPVIDAGGIFEFARKSGMIK 221          
BLAST of NO28G01560 vs. NCBI_GenBank
Match: ADI46877.1 (LEU1Sf [Volvox carteri f. nagariensis])

HSP 1 Score: 264.6 bits (675), Expect = 3.000e-67
Identity = 124/182 (68.13%), Postives = 154/182 (84.62%), Query Frame = 0
Query:   60 RPRQYKGKAFVTRDNIDTDQIIPAEYLTLVPSKIDEYEQLGAYALIGLPEALYSTRFVDPGKTKSEYPIIIGGDNFGCGSSREHAPIALGAAGTRVVIAETYARIFFRNCISTGEIYPYECPGQRLCDEISTGDEVSVDLDTDLLINHSTGKEYKLQALGDAGPVIEAGGIFPFAVKTGMIE 242
            +PR  KGK FVTRDNIDTDQIIPAEYLTLVPSK DEYE+LG+YALIGLP+ LY +R+V  G+ K+ YPIIIGG NFGCGSSREHAP+ALGAAG +V +AE+YARIFFRNCI+TGE+YP E    RLCD+++TG +V+VD++ ++L +HSTG  Y LQ +G+AGPVI+AGGIF +A + GMI+
Sbjct:   33 QPRVIKGKCFVTRDNIDTDQIIPAEYLTLVPSKPDEYEKLGSYALIGLPDNLYPSRYVRDGEMKTAYPIIIGGQNFGCGSSREHAPVALGAAGAKVCVAESYARIFFRNCIATGELYPCETT-VRLCDKLTTGSDVTVDMENNILTDHSTGATYPLQEIGEAGPVIDAGGIFEYARRQGMIK 213          
BLAST of NO28G01560 vs. NCBI_GenBank
Match: ABH11014.1 (3-isopropylmalate dehydratase, partial [Polytomella parva])

HSP 1 Score: 263.8 bits (673), Expect = 5.200e-67
Identity = 126/182 (69.23%), Postives = 151/182 (82.97%), Query Frame = 0
Query:   62 RQYKGKAFVTRDNIDTDQIIPAEYLTLVPSKIDEYEQLGAYALIGLPEALYSTRFVDPGKTKSEYPIIIGGDNFGCGSSREHAPIALGAAGTRVVIAETYARIFFRNCISTGEIYPYECPGQRLCDEISTGDEVSVDLDTDLLINHSTGKEYKLQALGDAGPVIEAGGIFPFAVKTGMIEKA 244
            R   GK FVT+DNIDTDQIIPAEYLTLVPSK DEYE+LG+YALIGLP+ LY TRFV  GK K++YPIIIGG NFGCGSSREHAP+A+GAAG RVV+AE+YARIFFRNC+STGE+YP E    RLCD + T  EV+VD+D ++L +HS GK Y L+ +G+AGPV++AGGIF +A K GMI+ A
Sbjct:    2 RVITGKCFVTKDNIDTDQIIPAEYLTLVPSKPDEYEKLGSYALIGLPDDLYKTRFVKDGKMKTDYPIIIGGQNFGCGSSREHAPVAIGAAGGRVVVAESYARIFFRNCMSTGELYPCETE-LRLCDILKTDSEVTVDMDKNILTDHSNGKVYDLKPIGEAGPVVDAGGIFEYARKHGMIKTA 182          
The following BLAST results are available for this feature:
BLAST of NO28G01560 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
CBN77769.11.100e-7771.573-isopropylmalate dehydratase [Ectocarpus siliculo... [more]
CAQ52411.12.700e-7672.313-isopropylmalate dehydratase, partial [Laminaria ... [more]
XP_001696402.11.100e-6969.95isopropylmalate dehydratase, small subunit [Chlamy... [more]
ADF43194.11.100e-6969.95LEU1Sm [Chlamydomonas reinhardtii][more]
AAY79403.12.100e-6868.85isopropylmalate dehydratase [Gonium pectorale][more]
BAU61575.12.700e-6868.85isopropylmalate dehydratase, small subunit [Gonium... [more]
ADI46907.18.000e-6868.51LEU1Sm [Volvox carteri f. nagariensis][more]
PRW57149.11.800e-6768.513-isopropylmalate dehydratase [Chlorella sorokinia... [more]
ADI46877.13.000e-6768.13LEU1Sf [Volvox carteri f. nagariensis][more]
ABH11014.15.200e-6769.233-isopropylmalate dehydratase, partial [Polytomell... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR065ncniR065Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR101ngnoR101Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO28G01560.1NO28G01560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609512gene_9888Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO28G01560.1NO28G01560.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO28G01560 ID=NO28G01560|Name=NO28G01560|organism=Nannochloropsis oceanica|type=gene|length=1923bp
ATGAACAAGCCTGTTCTCCTTCTCCTCGCGGCGGCCGTCACAGGCACGCA
AGCGTTCTTTGCAGCCTCCCCTGCTCAGgttcgttacataggaaggaagt
aagggatggaggggggataagagatcgagataatatgcatgtataatgca
gcagcaacgttacatagaccaaagccgagcaatgcgatgggaacccatcg
atccttactatctttcccaaccttcctccttgcccccctctttcacgtag
GTGGCAACAACGACGACTAGAAGGACGGGGGCCATGCGTATGATGTCTTC
GGAGAACCTGGACGATCCCCGCCTGATGgtagggagggagggcgggaggg
agggagggagaaagggagggatgcagggaagtaaggaaaggaggaaggaa
ggagggatgaagagaaggaaaaagggagaaagggaaggggggagagaggc
aggaagaaggcacagagagagggtgggttgagaaggaaaggagaggagga
aaggaggacaaggatgctataatctcaaagagtggtagagctgcttatgg
aggcggaaaagcatacgcgatacaaaaatcctccagccattcagcccctc
ctcttcctccctccctcctcttcctccctccctccctctcccccctcacc
tccagGAAATGCCCAAATTCCGTCCTCGTCCTCGTCAATACAAGGGCAAG
GCTTTCGTGACACGCGACAACATTGACACTGATCAGATTATTCCCGCCGA
GTACCTCACCCTGGTGCCTTCCAAGgtacatcctctctcccttcctcccg
cctgccctccctccctccctcccccttccctctctcaatgtctccctctc
tcatgcccctccctccttccctctctccctcagATCGACGAATACGAGCA
GCTGGGCGCTTACGCTCTAATCGGCCTGCCTGAAGCCCTCTACAGCACGC
GGTTTGTGGACCCCGGGAAGACCAAGAGCGAGTATCCCATCATAATCGGC
GGCGACAACTTCGGTTGTGGCTCCTCCCGAGAGgtacctccctccctcct
ttcctcccttcctccctccctccctccccctcgccccctggaaaggaaga
agcccttacatgacatgggatgatgacgagaagcctcttgttcccttttt
ctcatcacacgcataacagtcgctgagacatgtcactcaaacactcgctc
cctcactaacaccctccctccctcccttcttccgtcccttcctcagCACG
CCCCCATCGCTCTCGGTGCAGCTGGCACACGTGTGGTGATTGCTGAGACC
TACGCACGTATCTTCTTCCGCAACTGCATCTCCACCGGCGAGgtacttag
gcatccctcccttccctccttatcaccctctttccttccctccctccctc
cctccctctcttattcccgctttcagcctctcccacgatcgcaagcatct
ttaccattccgtccctcttccctccctccctccctccttccctccctctc
ttcctccctccttctcgctctccctccctccttccctcctccccctcttc
ctagATCTACCCCTACGAGTGTCCCGGGCAGCGCTTGTGTGATGAAATTT
CAACAGGCGACGAGGTATCCGTCGACCTCGACACAGACTTGCTCATCAAC
CACAGgttcgtgccctccctcccttccccccttcctccctccctccctcc
ctcccttcctcgcaccggcaagcgagacgccgagcctgtcattgacgtcc
tcaccttctcccctccctctcctccctcccgccctccctcgccccctccc
ctccccagCACGGGCAAGGAATACAAGCTACAGGCATTGGGAGACGCGGG
ACCTGTGATTGAGGCCGGCGGCATCTTCCCCTTCGCGGTCAAGACGGGCA
TGATTGAGAAAGCGGGGGTGTAG
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protein sequence of NO28G01560.1

>NO28G01560.1-protein ID=NO28G01560.1-protein|Name=NO28G01560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=246bp
MNKPVLLLLAAAVTGTQAFFAASPAQVATTTTRRTGAMRMMSSENLDDPR
LMEMPKFRPRPRQYKGKAFVTRDNIDTDQIIPAEYLTLVPSKIDEYEQLG
AYALIGLPEALYSTRFVDPGKTKSEYPIIIGGDNFGCGSSREHAPIALGA
AGTRVVIAETYARIFFRNCISTGEIYPYECPGQRLCDEISTGDEVSVDLD
TDLLINHSTGKEYKLQALGDAGPVIEAGGIFPFAVKTGMIEKAGV*
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Synonyms
Publications