NO28G01560, NO28G01560 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO28G01560 vs. NCBI_GenBank
Match: CBN77769.1 (3-isopropylmalate dehydratase [Ectocarpus siliculosus]) HSP 1 Score: 299.3 bits (765), Expect = 1.100e-77 Identity = 141/197 (71.57%), Postives = 169/197 (85.79%), Query Frame = 0 Query: 46 LDDPRLMEMPKFRPRPRQYKGKAFVTRDNIDTDQIIPAEYLTLVPSKIDEYEQLGAYALIGLPEALYSTRFVDPGKTKSEYPIIIGGDNFGCGSSREHAPIALGAAGTRVVIAETYARIFFRNCISTGEIYPYECPGQRLCDEISTGDEVSVDLDTDLLINHSTGKEYKLQALGDAGPVIEAGGIFPFAVKTGMIEK 243 +DDPR+ EMPK R RP +Y G+ FV +DNIDTDQIIPAEYLTLVPS DEYE+LG+YA+IGLP+ +Y+TR+V+ G + YPI+I GDNFGCGSSREHAPIA+GAAGTRVV+AE+YARIFFRN I+TGE+YPYEC +RL D +TGD+V+VDL TD LINHSTGKEY L LGDAGPVI AGG+FP+A+KTGMI+K Sbjct: 58 IDDPRVKEMPKNRDRPDKYTGQCFVVKDNIDTDQIIPAEYLTLVPSNADEYEKLGSYAMIGLPD-VYTTRYVEEGSMATRYPIMIAGDNFGCGSSREHAPIAMGAAGTRVVVAESYARIFFRNSIATGELYPYECQ-ERLVDAFTTGDDVTVDLTTDTLINHSTGKEYPLNPLGDAGPVINAGGLFPYAIKTGMIKK 252
BLAST of NO28G01560 vs. NCBI_GenBank
Match: CAQ52411.1 (3-isopropylmalate dehydratase, partial [Laminaria digitata]) HSP 1 Score: 294.7 bits (753), Expect = 2.700e-76 Identity = 141/195 (72.31%), Postives = 165/195 (84.62%), Query Frame = 0 Query: 48 DPRLMEMPKFRPRPRQYKGKAFVTRDNIDTDQIIPAEYLTLVPSKIDEYEQLGAYALIGLPEALYSTRFVDPGKTKSEYPIIIGGDNFGCGSSREHAPIALGAAGTRVVIAETYARIFFRNCISTGEIYPYECPGQRLCDEISTGDEVSVDLDTDLLINHSTGKEYKLQALGDAGPVIEAGGIFPFAVKTGMIEK 243 DPR EMPKFR RP +Y G FV +DNIDTDQIIPAEYLTLVPSK DEYE+LG+YA+IGLP ++Y TRFV+ G K++YPI+I GDNFGCGSSREHAPIALGAAG RVV+AE+YARIFFRN I+TGE+YPYEC +RL D I TGDE++VDL TD L NH++GKEY L LGDA PVI AGG+FPFA++TGMI+K Sbjct: 54 DPREKEMPKFRERPTKYTGACFVVKDNIDTDQIIPAEYLTLVPSKADEYEKLGSYAMIGLP-SVYKTRFVEEGSMKTKYPIMIAGDNFGCGSSREHAPIALGAAGARVVVAESYARIFFRNSIATGELYPYECQ-ERLVDIIKTGDELTVDLSTDTLTNHASGKEYPLTPLGDAAPVINAGGLFPFAIQTGMIKK 246
BLAST of NO28G01560 vs. NCBI_GenBank
Match: XP_001696402.1 (isopropylmalate dehydratase, small subunit [Chlamydomonas reinhardtii] >ADF43140.1 LEU1Sp [Chlamydomonas reinhardtii] >PNW81581.1 hypothetical protein CHLRE_06g252650v5 [Chlamydomonas reinhardtii]) HSP 1 Score: 272.7 bits (696), Expect = 1.100e-69 Identity = 128/183 (69.95%), Postives = 155/183 (84.70%), Query Frame = 0 Query: 61 PRQYKGKAFVTRDNIDTDQIIPAEYLTLVPSKIDEYEQLGAYALIGLPEALYSTRFVDPGKTKSEYPIIIGGDNFGCGSSREHAPIALGAAGTRVVIAETYARIFFRNCISTGEIYPYECPGQRLCDEISTGDEVSVDLDTDLLINHSTGKEYKLQALGDAGPVIEAGGIFPFAVKTGMIEKA 244 PR +GK FVT+DNIDTDQIIPAEYLTLVPSK DEYE+LG+YALIGLP+ Y+TR+V G+ K+EYPIIIGG NFGCGSSREHAP+ALGAAG +V +AE+YARIFFRNCI+TGE+YP E RLCDE+ TG EV+VD+D ++L +HSTGK Y LQ +G+AGPVI+AGGIF +A + GMI+ A Sbjct: 33 PRVVRGKCFVTKDNIDTDQIIPAEYLTLVPSKPDEYEKLGSYALIGLPDDTYTTRYVKEGEMKTEYPIIIGGQNFGCGSSREHAPVALGAAGAKVCVAESYARIFFRNCIATGELYPCETT-VRLCDELKTGSEVTVDMDANVLTDHSTGKTYNLQEIGEAGPVIDAGGIFEYARRQGMIKTA 214
BLAST of NO28G01560 vs. NCBI_GenBank
Match: ADF43194.1 (LEU1Sm [Chlamydomonas reinhardtii]) HSP 1 Score: 272.7 bits (696), Expect = 1.100e-69 Identity = 128/183 (69.95%), Postives = 155/183 (84.70%), Query Frame = 0 Query: 61 PRQYKGKAFVTRDNIDTDQIIPAEYLTLVPSKIDEYEQLGAYALIGLPEALYSTRFVDPGKTKSEYPIIIGGDNFGCGSSREHAPIALGAAGTRVVIAETYARIFFRNCISTGEIYPYECPGQRLCDEISTGDEVSVDLDTDLLINHSTGKEYKLQALGDAGPVIEAGGIFPFAVKTGMIEKA 244 PR +GK FVT+DNIDTDQIIPAEYLTLVPSK DEYE+LG+YALIGLP+ Y+TR+V G+ K+EYPIIIGG NFGCGSSREHAP+ALGAAG +V +AE+YARIFFRNCI+TGE+YP E RLCDE+ TG EV+VD+D ++L +HSTGK Y LQ +G+AGPVI+AGGIF +A + GMI+ A Sbjct: 33 PRVVRGKCFVTKDNIDTDQIIPAEYLTLVPSKPDEYEKLGSYALIGLPDDTYTTRYVKDGEMKTEYPIIIGGQNFGCGSSREHAPVALGAAGAKVCVAESYARIFFRNCIATGELYPCETT-VRLCDELKTGSEVTVDMDANVLTDHSTGKTYNLQEIGEAGPVIDAGGIFEYARRQGMIKTA 214
BLAST of NO28G01560 vs. NCBI_GenBank
Match: AAY79403.1 (isopropylmalate dehydratase [Gonium pectorale]) HSP 1 Score: 268.5 bits (685), Expect = 2.100e-68 Identity = 126/183 (68.85%), Postives = 154/183 (84.15%), Query Frame = 0 Query: 61 PRQYKGKAFVTRDNIDTDQIIPAEYLTLVPSKIDEYEQLGAYALIGLPEALYSTRFVDPGKTKSEYPIIIGGDNFGCGSSREHAPIALGAAGTRVVIAETYARIFFRNCISTGEIYPYECPGQRLCDEISTGDEVSVDLDTDLLINHSTGKEYKLQALGDAGPVIEAGGIFPFAVKTGMIEKA 244 PR +GK FVTRDNIDTDQIIPAEYLTLVPSK +EYE+LG+YALIGLP+ LY R+V G+ K+EYP+IIGG NFGCGSSREHAP++LGAAG +V +AE+YARIFFRNCI+TGE+YP E G RLCD + TG EV+VD+D ++L +HSTGK Y LQ +G+AGPVI+AGGIF +A + GMI+ A Sbjct: 32 PRVIRGKCFVTRDNIDTDQIIPAEYLTLVPSKPEEYEKLGSYALIGLPDDLYPERYVKEGEMKTEYPVIIGGQNFGCGSSREHAPVSLGAAGAKVCVAESYARIFFRNCIATGELYPCE-TGARLCDVLKTGTEVTVDMDKNVLTDHSTGKTYPLQEIGEAGPVIDAGGIFEYARRQGMIKVA 213
BLAST of NO28G01560 vs. NCBI_GenBank
Match: BAU61575.1 (isopropylmalate dehydratase, small subunit [Gonium pectorale] >BAU61603.1 isopropylmalate dehydratase, small subunit [Gonium pectorale]) HSP 1 Score: 268.1 bits (684), Expect = 2.700e-68 Identity = 126/183 (68.85%), Postives = 154/183 (84.15%), Query Frame = 0 Query: 61 PRQYKGKAFVTRDNIDTDQIIPAEYLTLVPSKIDEYEQLGAYALIGLPEALYSTRFVDPGKTKSEYPIIIGGDNFGCGSSREHAPIALGAAGTRVVIAETYARIFFRNCISTGEIYPYECPGQRLCDEISTGDEVSVDLDTDLLINHSTGKEYKLQALGDAGPVIEAGGIFPFAVKTGMIEKA 244 PR +GK FVTRDNIDTDQIIPAEYLTLVPSK +EYE+LG+YALIGLP+ LY R+V G+ K+EYP+IIGG NFGCGSSREHAP++LGAAG +V +AE+YARIFFRNCI+TGE+YP E G RLCD + TG EV+VD+D ++L +HSTGK Y LQ +G+AGPVI+AGGIF +A + GMI+ A Sbjct: 32 PRVIRGKCFVTRDNIDTDQIIPAEYLTLVPSKPEEYEKLGSYALIGLPDDLYPERYVKEGEMKTEYPVIIGGQNFGCGSSREHAPVSLGAAGAKVCVAESYARIFFRNCIATGELYPCE-TGVRLCDVLKTGTEVTVDMDKNVLTDHSTGKTYPLQEIGEAGPVIDAGGIFEYARRQGMIKVA 213
BLAST of NO28G01560 vs. NCBI_GenBank
Match: ADI46907.1 (LEU1Sm [Volvox carteri f. nagariensis]) HSP 1 Score: 266.5 bits (680), Expect = 8.000e-68 Identity = 124/181 (68.51%), Postives = 153/181 (84.53%), Query Frame = 0 Query: 61 PRQYKGKAFVTRDNIDTDQIIPAEYLTLVPSKIDEYEQLGAYALIGLPEALYSTRFVDPGKTKSEYPIIIGGDNFGCGSSREHAPIALGAAGTRVVIAETYARIFFRNCISTGEIYPYECPGQRLCDEISTGDEVSVDLDTDLLINHSTGKEYKLQALGDAGPVIEAGGIFPFAVKTGMIE 242 PR +GK FVTRDNIDTDQIIPAEYLTLVPSK DEY +LG+YALIGLP+ LY R+V+ G+ K+ YPII+GG NFGCGSSREHAP+ALGAAG +V +AE+YARIFFRNCI+TGE+YP E P RLCD+++TG EV+VD++ ++L +HSTG Y LQA+G+AGPVI+AGGIF +A GMI+ Sbjct: 39 PRVIRGKCFVTRDNIDTDQIIPAEYLTLVPSKPDEYVKLGSYALIGLPDNLYPIRYVEDGEVKTNYPIIVGGQNFGCGSSREHAPVALGAAGAKVCVAESYARIFFRNCIATGELYPCETP-VRLCDKLTTGSEVTVDMEMNILTDHSTGATYPLQAIGEAGPVIDAGGIFEYARSEGMIK 218
BLAST of NO28G01560 vs. NCBI_GenBank
Match: PRW57149.1 (3-isopropylmalate dehydratase [Chlorella sorokiniana]) HSP 1 Score: 265.4 bits (677), Expect = 1.800e-67 Identity = 124/181 (68.51%), Postives = 153/181 (84.53%), Query Frame = 0 Query: 61 PRQYKGKAFVTRDNIDTDQIIPAEYLTLVPSKIDEYEQLGAYALIGLPEALYSTRFVDPGKTKSEYPIIIGGDNFGCGSSREHAPIALGAAGTRVVIAETYARIFFRNCISTGEIYPYECPGQRLCDEISTGDEVSVDLDTDLLINHSTGKEYKLQALGDAGPVIEAGGIFPFAVKTGMIE 242 PR+ +GK F+T+DNIDTDQIIPAEYLTLVPSK DEYE+LG+YAL GLP+ LY TR+V+ K++YPIIIGG NFGCGSSREHAP+ALGA+G VV+AE+YARIFFRNC+STGE+YP E RLC+E+ TG EV VD++ D+L + +TGK+Y L+ LGDAGPVI+AGGIF FA K+GMI+ Sbjct: 42 PRKIRGKCFITKDNIDTDQIIPAEYLTLVPSKPDEYEKLGSYALCGLPDDLYPTRYVEVDSMKTDYPIIIGGQNFGCGSSREHAPVALGASGATVVVAESYARIFFRNCVSTGELYPVE-TDVRLCEELETGREVEVDMEADVLTDLTTGKKYSLKPLGDAGPVIDAGGIFEFARKSGMIK 221
BLAST of NO28G01560 vs. NCBI_GenBank
Match: ADI46877.1 (LEU1Sf [Volvox carteri f. nagariensis]) HSP 1 Score: 264.6 bits (675), Expect = 3.000e-67 Identity = 124/182 (68.13%), Postives = 154/182 (84.62%), Query Frame = 0 Query: 60 RPRQYKGKAFVTRDNIDTDQIIPAEYLTLVPSKIDEYEQLGAYALIGLPEALYSTRFVDPGKTKSEYPIIIGGDNFGCGSSREHAPIALGAAGTRVVIAETYARIFFRNCISTGEIYPYECPGQRLCDEISTGDEVSVDLDTDLLINHSTGKEYKLQALGDAGPVIEAGGIFPFAVKTGMIE 242 +PR KGK FVTRDNIDTDQIIPAEYLTLVPSK DEYE+LG+YALIGLP+ LY +R+V G+ K+ YPIIIGG NFGCGSSREHAP+ALGAAG +V +AE+YARIFFRNCI+TGE+YP E RLCD+++TG +V+VD++ ++L +HSTG Y LQ +G+AGPVI+AGGIF +A + GMI+ Sbjct: 33 QPRVIKGKCFVTRDNIDTDQIIPAEYLTLVPSKPDEYEKLGSYALIGLPDNLYPSRYVRDGEMKTAYPIIIGGQNFGCGSSREHAPVALGAAGAKVCVAESYARIFFRNCIATGELYPCETT-VRLCDKLTTGSDVTVDMENNILTDHSTGATYPLQEIGEAGPVIDAGGIFEYARRQGMIK 213
BLAST of NO28G01560 vs. NCBI_GenBank
Match: ABH11014.1 (3-isopropylmalate dehydratase, partial [Polytomella parva]) HSP 1 Score: 263.8 bits (673), Expect = 5.200e-67 Identity = 126/182 (69.23%), Postives = 151/182 (82.97%), Query Frame = 0 Query: 62 RQYKGKAFVTRDNIDTDQIIPAEYLTLVPSKIDEYEQLGAYALIGLPEALYSTRFVDPGKTKSEYPIIIGGDNFGCGSSREHAPIALGAAGTRVVIAETYARIFFRNCISTGEIYPYECPGQRLCDEISTGDEVSVDLDTDLLINHSTGKEYKLQALGDAGPVIEAGGIFPFAVKTGMIEKA 244 R GK FVT+DNIDTDQIIPAEYLTLVPSK DEYE+LG+YALIGLP+ LY TRFV GK K++YPIIIGG NFGCGSSREHAP+A+GAAG RVV+AE+YARIFFRNC+STGE+YP E RLCD + T EV+VD+D ++L +HS GK Y L+ +G+AGPV++AGGIF +A K GMI+ A Sbjct: 2 RVITGKCFVTKDNIDTDQIIPAEYLTLVPSKPDEYEKLGSYALIGLPDDLYKTRFVKDGKMKTDYPIIIGGQNFGCGSSREHAPVAIGAAGGRVVVAESYARIFFRNCMSTGELYPCETE-LRLCDILKTDSEVTVDMDKNILTDHSNGKVYDLKPIGEAGPVVDAGGIFEYARKHGMIKTA 182 The following BLAST results are available for this feature:
BLAST of NO28G01560 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO28G01560 ID=NO28G01560|Name=NO28G01560|organism=Nannochloropsis oceanica|type=gene|length=1923bpback to top protein sequence of NO28G01560.1 >NO28G01560.1-protein ID=NO28G01560.1-protein|Name=NO28G01560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=246bpback to top Synonyms
Publications
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