NO28G01560.1, NO28G01560.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO28G01560.1
Unique NameNO28G01560.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length738
Alignment locationchr28:496347..498269 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:496347..498269 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO28G01560.1 vs.
Match: CBN77769.1 (3-isopropylmalate dehydratase [Ectocarpus siliculosus])

HSP 1 Score: 296.2 bits (757), Expect = 9.400e-77
Identity = 148/235 (62.98%), Postives = 181/235 (77.02%), Query Frame = 0 
Query:    8 LLAAAVTGTQAFFAASPAQVATTTTRRTGAMRMMSSENLDDPRLMEMPKFRPRPRQYKGKAFVTRDNIDTDQIIPAEYLTLVPSKIDEYEQLGAYALIGLPEALYSTRFVDPGKTKSEYPIIIGGDNFGCGSSREHAPIALGAAGTRVVIAETYARIFFRNCISTGEIYPYECPGQRLCDEISTGDEVSVDLDTDLLINHSTGKEYKLQALGDAGPVIEAGGIFPFAVKTGMIEK 243
            +L  +  GT A  +    + A    RR        +  +DDPR+ EMPK R RP +Y G+ FV +DNIDTDQIIPAEYLTLVPS  DEYE+LG+YA+IGLP+ +Y+TR+V+ G   + YPI+I GDNFGCGSSREHAPIA+GAAGTRVV+AE+YARIFFRN I+TGE+YPYEC  +RL D  +TGD+V+VDL TD LINHSTGKEY L  LGDAGPVI AGG+FP+A+KTGMI+K
Sbjct:   23 VLPMSTAGTTAVASRPGCKSAGVAPRRAAEA---DAAAIDDPRVKEMPKNRDRPDKYTGQCFVVKDNIDTDQIIPAEYLTLVPSNADEYEKLGSYAMIGLPD-VYTTRYVEEGSMATRYPIMIAGDNFGCGSSREHAPIAMGAAGTRVVVAESYARIFFRNSIATGELYPYECQ-ERLVDAFTTGDDVTVDLTTDTLINHSTGKEYPLNPLGDAGPVINAGGLFPYAIKTGMIKK 252
The following BLAST results are available for this feature:
BLAST of NO28G01560.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBN77769.19.400e-7762.983-isopropylmalate dehydratase [Ectocarpus siliculo... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO28G01560NO28G01560Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO28G01560.1NO28G01560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO28G01560.1.cds1NO28G01560.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01560.1.cds2NO28G01560.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01560.1.cds3NO28G01560.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01560.1.cds4NO28G01560.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01560.1.cds5NO28G01560.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01560.1.cds6NO28G01560.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01560.1.cds7NO28G01560.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO28G01560.1 ID=NO28G01560.1|Name=NO28G01560.1|organism=Nannochloropsis oceanica|type=mRNA|length=738bp
ATGAACAAGCCTGTTCTCCTTCTCCTCGCGGCGGCCGTCACAGGCACGCA
AGCGTTCTTTGCAGCCTCCCCTGCTCAGGTGGCAACAACGACGACTAGAA
GGACGGGGGCCATGCGTATGATGTCTTCGGAGAACCTGGACGATCCCCGC
CTGATGGAAATGCCCAAATTCCGTCCTCGTCCTCGTCAATACAAGGGCAA
GGCTTTCGTGACACGCGACAACATTGACACTGATCAGATTATTCCCGCCG
AGTACCTCACCCTGGTGCCTTCCAAGATCGACGAATACGAGCAGCTGGGC
GCTTACGCTCTAATCGGCCTGCCTGAAGCCCTCTACAGCACGCGGTTTGT
GGACCCCGGGAAGACCAAGAGCGAGTATCCCATCATAATCGGCGGCGACA
ACTTCGGTTGTGGCTCCTCCCGAGAGCACGCCCCCATCGCTCTCGGTGCA
GCTGGCACACGTGTGGTGATTGCTGAGACCTACGCACGTATCTTCTTCCG
CAACTGCATCTCCACCGGCGAGATCTACCCCTACGAGTGTCCCGGGCAGC
GCTTGTGTGATGAAATTTCAACAGGCGACGAGGTATCCGTCGACCTCGAC
ACAGACTTGCTCATCAACCACAGCACGGGCAAGGAATACAAGCTACAGGC
ATTGGGAGACGCGGGACCTGTGATTGAGGCCGGCGGCATCTTCCCCTTCG
CGGTCAAGACGGGCATGATTGAGAAAGCGGGGGTGTAG
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protein sequence of NO28G01560.1

>NO28G01560.1-protein ID=NO28G01560.1-protein|Name=NO28G01560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=246bp
MNKPVLLLLAAAVTGTQAFFAASPAQVATTTTRRTGAMRMMSSENLDDPR
LMEMPKFRPRPRQYKGKAFVTRDNIDTDQIIPAEYLTLVPSKIDEYEQLG
AYALIGLPEALYSTRFVDPGKTKSEYPIIIGGDNFGCGSSREHAPIALGA
AGTRVVIAETYARIFFRNCISTGEIYPYECPGQRLCDEISTGDEVSVDLD
TDLLINHSTGKEYKLQALGDAGPVIEAGGIFPFAVKTGMIEKAGV*
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mRNA from alignment at chr28:496347..498269+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO28G01560.1 ID=NO28G01560.1|Name=NO28G01560.1|organism=Nannochloropsis oceanica|type=mRNA|length=1923bp|location=Sequence derived from alignment at chr28:496347..498269+ (Nannochloropsis oceanica)
ATGAACAAGCCTGTTCTCCTTCTCCTCGCGGCGGCCGTCACAGGCACGCA
AGCGTTCTTTGCAGCCTCCCCTGCTCAGGTTCGTTACATAGGAAGGAAGT
AAGGGATGGAGGGGGGATAAGAGATCGAGATAATATGCATGTATAATGCA
GCAGCAACGTTACATAGACCAAAGCCGAGCAATGCGATGGGAACCCATCG
ATCCTTACTATCTTTCCCAACCTTCCTCCTTGCCCCCCTCTTTCACGTAG
GTGGCAACAACGACGACTAGAAGGACGGGGGCCATGCGTATGATGTCTTC
GGAGAACCTGGACGATCCCCGCCTGATGGTAGGGAGGGAGGGCGGGAGGG
AGGGAGGGAGAAAGGGAGGGATGCAGGGAAGTAAGGAAAGGAGGAAGGAA
GGAGGGATGAAGAGAAGGAAAAAGGGAGAAAGGGAAGGGGGGAGAGAGGC
AGGAAGAAGGCACAGAGAGAGGGTGGGTTGAGAAGGAAAGGAGAGGAGGA
AAGGAGGACAAGGATGCTATAATCTCAAAGAGTGGTAGAGCTGCTTATGG
AGGCGGAAAAGCATACGCGATACAAAAATCCTCCAGCCATTCAGCCCCTC
CTCTTCCTCCCTCCCTCCTCTTCCTCCCTCCCTCCCTCTCCCCCCTCACC
TCCAGGAAATGCCCAAATTCCGTCCTCGTCCTCGTCAATACAAGGGCAAG
GCTTTCGTGACACGCGACAACATTGACACTGATCAGATTATTCCCGCCGA
GTACCTCACCCTGGTGCCTTCCAAGGTACATCCTCTCTCCCTTCCTCCCG
CCTGCCCTCCCTCCCTCCCTCCCCCTTCCCTCTCTCAATGTCTCCCTCTC
TCATGCCCCTCCCTCCTTCCCTCTCTCCCTCAGATCGACGAATACGAGCA
GCTGGGCGCTTACGCTCTAATCGGCCTGCCTGAAGCCCTCTACAGCACGC
GGTTTGTGGACCCCGGGAAGACCAAGAGCGAGTATCCCATCATAATCGGC
GGCGACAACTTCGGTTGTGGCTCCTCCCGAGAGGTACCTCCCTCCCTCCT
TTCCTCCCTTCCTCCCTCCCTCCCTCCCCCTCGCCCCCTGGAAAGGAAGA
AGCCCTTACATGACATGGGATGATGACGAGAAGCCTCTTGTTCCCTTTTT
CTCATCACACGCATAACAGTCGCTGAGACATGTCACTCAAACACTCGCTC
CCTCACTAACACCCTCCCTCCCTCCCTTCTTCCGTCCCTTCCTCAGCACG
CCCCCATCGCTCTCGGTGCAGCTGGCACACGTGTGGTGATTGCTGAGACC
TACGCACGTATCTTCTTCCGCAACTGCATCTCCACCGGCGAGGTACTTAG
GCATCCCTCCCTTCCCTCCTTATCACCCTCTTTCCTTCCCTCCCTCCCTC
CCTCCCTCTCTTATTCCCGCTTTCAGCCTCTCCCACGATCGCAAGCATCT
TTACCATTCCGTCCCTCTTCCCTCCCTCCCTCCCTCCTTCCCTCCCTCTC
TTCCTCCCTCCTTCTCGCTCTCCCTCCCTCCTTCCCTCCTCCCCCTCTTC
CTAGATCTACCCCTACGAGTGTCCCGGGCAGCGCTTGTGTGATGAAATTT
CAACAGGCGACGAGGTATCCGTCGACCTCGACACAGACTTGCTCATCAAC
CACAGGTTCGTGCCCTCCCTCCCTTCCCCCCTTCCTCCCTCCCTCCCTCC
CTCCCTTCCTCGCACCGGCAAGCGAGACGCCGAGCCTGTCATTGACGTCC
TCACCTTCTCCCCTCCCTCTCCTCCCTCCCGCCCTCCCTCGCCCCCTCCC
CTCCCCAGCACGGGCAAGGAATACAAGCTACAGGCATTGGGAGACGCGGG
ACCTGTGATTGAGGCCGGCGGCATCTTCCCCTTCGCGGTCAAGACGGGCA
TGATTGAGAAAGCGGGGGTGTAG
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Coding sequence (CDS) from alignment at chr28:496347..498269+

>NO28G01560.1 ID=NO28G01560.1|Name=NO28G01560.1|organism=Nannochloropsis oceanica|type=CDS|length=738bp|location=Sequence derived from alignment at chr28:496347..498269+ (Nannochloropsis oceanica)
ATGAACAAGCCTGTTCTCCTTCTCCTCGCGGCGGCCGTCACAGGCACGCA
AGCGTTCTTTGCAGCCTCCCCTGCTCAGGTGGCAACAACGACGACTAGAA
GGACGGGGGCCATGCGTATGATGTCTTCGGAGAACCTGGACGATCCCCGC
CTGATGGAAATGCCCAAATTCCGTCCTCGTCCTCGTCAATACAAGGGCAA
GGCTTTCGTGACACGCGACAACATTGACACTGATCAGATTATTCCCGCCG
AGTACCTCACCCTGGTGCCTTCCAAGATCGACGAATACGAGCAGCTGGGC
GCTTACGCTCTAATCGGCCTGCCTGAAGCCCTCTACAGCACGCGGTTTGT
GGACCCCGGGAAGACCAAGAGCGAGTATCCCATCATAATCGGCGGCGACA
ACTTCGGTTGTGGCTCCTCCCGAGAGCACGCCCCCATCGCTCTCGGTGCA
GCTGGCACACGTGTGGTGATTGCTGAGACCTACGCACGTATCTTCTTCCG
CAACTGCATCTCCACCGGCGAGATCTACCCCTACGAGTGTCCCGGGCAGC
GCTTGTGTGATGAAATTTCAACAGGCGACGAGGTATCCGTCGACCTCGAC
ACAGACTTGCTCATCAACCACAGCACGGGCAAGGAATACAAGCTACAGGC
ATTGGGAGACGCGGGACCTGTGATTGAGGCCGGCGGCATCTTCCCCTTCG
CGGTCAAGACGGGCATGATTGAGAAAGCGGGGGTGTAG
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Synonyms
Publications