NO28G01550, NO28G01550 (gene) Nannochloropsis oceanica

Overview
NameNO28G01550
Unique NameNO28G01550
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1914
Alignment locationchr28:494121..496034 -

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:494121..496034 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR021475DUF3128
Homology
BLAST of NO28G01550 vs. NCBI_GenBank
Match: XP_005853390.1 (hypothetical protein NGA_0476010 [Nannochloropsis gaditana CCMP526] >EKU22972.1 hypothetical protein NGA_0476010 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 105.9 bits (263), Expect = 1.100e-19
Identity = 46/50 (92.00%), Postives = 50/50 (100.00%), Query Frame = 0
Query:   47 TSPTSCTYIFDSLWFCLSPVYQAKEYYISGDFDSCEEKASALYMCLSNKV 97
            TSPTSCTYIFDSLWFCLSPVYQAKEYYISGDFD+CE+KASALYMCL+NK+
Sbjct:   61 TSPTSCTYIFDSLWFCLSPVYQAKEYYISGDFDACEDKASALYMCLANKM 110          
BLAST of NO28G01550 vs. NCBI_GenBank
Match: XP_005854615.1 (hypothetical protein NGA_0476020, partial [Nannochloropsis gaditana CCMP526] >EKU21748.1 hypothetical protein NGA_0476020, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 105.5 bits (262), Expect = 1.400e-19
Identity = 46/49 (93.88%), Postives = 49/49 (100.00%), Query Frame = 0
Query:   47 TSPTSCTYIFDSLWFCLSPVYQAKEYYISGDFDSCEEKASALYMCLSNK 96
            TSPTSCTYIFDSLWFCLSPVYQAKEYYISGDFD+CE+KASALYMCL+NK
Sbjct:   61 TSPTSCTYIFDSLWFCLSPVYQAKEYYISGDFDACEDKASALYMCLANK 109          
BLAST of NO28G01550 vs. NCBI_GenBank
Match: XP_020681455.1 (uncharacterized protein C227.17c isoform X1 [Dendrobium catenatum] >PKU65377.1 hypothetical protein MA16_Dca023980 [Dendrobium catenatum])

HSP 1 Score: 72.8 bits (177), Expect = 1.000e-9
Identity = 39/91 (42.86%), Postives = 54/91 (59.34%), Query Frame = 0
Query:   47 TSPTSCTYIFDSLWFCLSPVYQAKEYYISGDFDSCEEKASALYMCLSNKVKKDPDMDRKIEAKLKRKPIQPCWTKRGEGKGDEVEETAPVW 138
            TS  SCT  FD+LWFC SP +Q ++YY  G FDSC  K S+L+ CLS K K+  ++++ ++A+ K K     WT R       VEE +  W
Sbjct:   22 TSRLSCTKYFDALWFCYSPFHQMEQYYRYGHFDSCSGKWSSLFDCLSLKTKRPDEVEKILQAREKSK--SHIWTYR------TVEEASENW 104          
BLAST of NO28G01550 vs. NCBI_GenBank
Match: XP_009390014.1 (PREDICTED: uncharacterized protein C227.17c [Musa acuminata subsp. malaccensis])

HSP 1 Score: 70.1 bits (170), Expect = 6.500e-9
Identity = 38/87 (43.68%), Postives = 52/87 (59.77%), Query Frame = 0
Query:   51 SCTYIFDSLWFCLSPVYQAKEYYISGDFDSCEEKASALYMCLSNKVKKDPDMDRKIEAKLKRKPIQPCWTKRGEGKGDEVEETAPVW 138
            SCT  FD+LWFC SP +Q ++YY  G+FD+C  K +AL+ CL+ K KK  ++   +EA+ K K  Q  WT R       VEE +  W
Sbjct:   32 SCTKHFDALWFCYSPFHQVQQYYRHGEFDNCFGKWNALFDCLNLKTKKSSEVQEILEAREKAK--QHIWTIR------TVEEASVNW 110          
BLAST of NO28G01550 vs. NCBI_GenBank
Match: XP_019161988.1 (PREDICTED: uncharacterized protein C227.17c-like [Ipomoea nil])

HSP 1 Score: 69.7 bits (169), Expect = 8.500e-9
Identity = 36/88 (40.91%), Postives = 52/88 (59.09%), Query Frame = 0
Query:   51 SCTYIFDSLWFCLSPVYQAKEYYISGDFDSCEEKASALYMCLSNKVKKDPDMDRKIEAKLKRKPIQPCWTKRGEGKGDEVEETAPVWE 139
            SC+  FD+LWFC +PV+Q ++YY  G  D+C +K SALY CLS K K+  +++  +E + K KP    W+ R        EE A  W+
Sbjct:   12 SCSACFDALWFCYTPVHQMQQYYRLGSLDNCSDKWSALYDCLSLKTKRQAEVEEILEKREKTKP--HIWSFR------TPEEAASHWQ 91          
BLAST of NO28G01550 vs. NCBI_GenBank
Match: XP_020106910.1 (uncharacterized protein C227.17c isoform X1 [Ananas comosus] >XP_020106911.1 uncharacterized protein C227.17c isoform X1 [Ananas comosus] >XP_020106912.1 uncharacterized protein C227.17c isoform X1 [Ananas comosus] >XP_020106913.1 uncharacterized protein C227.17c isoform X1 [Ananas comosus] >XP_020106914.1 uncharacterized protein C227.17c isoform X1 [Ananas comosus])

HSP 1 Score: 69.7 bits (169), Expect = 8.500e-9
Identity = 38/91 (41.76%), Postives = 52/91 (57.14%), Query Frame = 0
Query:   47 TSPTSCTYIFDSLWFCLSPVYQAKEYYISGDFDSCEEKASALYMCLSNKVKKDPDMDRKIEAKLKRKPIQPCWTKRGEGKGDEVEETAPVW 138
            T   SCT  FD+LWFC SP +Q ++YY  G+FD+C  K +AL+ CL+ K KK  ++   +EA+ K KP    W  R       VEE +  W
Sbjct:   17 TPTLSCTKCFDALWFCYSPFHQMQQYYRYGEFDTCFGKWNALFDCLTLKTKKSSEVKAILEAREKAKP--HIWMYR------TVEEASENW 99          
BLAST of NO28G01550 vs. NCBI_GenBank
Match: XP_022859136.1 (uncharacterized protein C227.17c-like [Olea europaea var. sylvestris])

HSP 1 Score: 69.7 bits (169), Expect = 8.500e-9
Identity = 39/88 (44.32%), Postives = 50/88 (56.82%), Query Frame = 0
Query:   51 SCTYIFDSLWFCLSPVYQAKEYYISGDFDSCEEKASALYMCLSNKVKKDPDMDRKIEAKLKRKPIQPCWTKRGEGKGDEVEETAPVWE 139
            SCT  FD+LWFC SPV+Q ++YY  GD D+C  K +AL  CLS K K+   ++  IE + K KP    W  R        EE AP W+
Sbjct:   16 SCTTHFDALWFCYSPVHQMQQYYRLGDLDNCSGKWTALVYCLSLKTKRFSGVEEIIETREKTKP--HIWFFRSP------EEAAPHWK 95          
BLAST of NO28G01550 vs. NCBI_GenBank
Match: XP_006366510.1 (PREDICTED: uncharacterized protein C227.17c [Solanum tuberosum] >XP_015160386.1 PREDICTED: uncharacterized protein C227.17c [Solanum tuberosum])

HSP 1 Score: 68.9 bits (167), Expect = 1.500e-8
Identity = 36/87 (41.38%), Postives = 50/87 (57.47%), Query Frame = 0
Query:   51 SCTYIFDSLWFCLSPVYQAKEYYISGDFDSCEEKASALYMCLSNKVKKDPDMDRKIEAKLKRKPIQPCWTKRGEGKGDEVEETAPVW 138
            SCT  FD+LWFC SPV+Q ++YY  G  D+C +K S L  CL+ K K+  +++  +EA+ K KP    W+ R        EE A  W
Sbjct:   18 SCTTYFDALWFCYSPVHQMQQYYRLGALDNCSKKWSGLVDCLTLKTKRSSEVEEILEAREKEKP--QLWSTR------TPEEAAAYW 96          
BLAST of NO28G01550 vs. NCBI_GenBank
Match: XP_010243478.1 (PREDICTED: uncharacterized protein LOC104587525 [Nelumbo nucifera])

HSP 1 Score: 68.9 bits (167), Expect = 1.500e-8
Identity = 31/64 (48.44%), Postives = 42/64 (65.62%), Query Frame = 0
Query:   51 SCTYIFDSLWFCLSPVYQAKEYYISGDFDSCEEKASALYMCLSNKVKKDPDMDRKIEAKLKRKP 115
            SCT  FDSLWFC SPV+Q ++YY  G  D+C EK +AL+ C + K K+  +M   +E + K KP
Sbjct:   46 SCTTCFDSLWFCYSPVHQMQQYYRLGVLDNCSEKWNALFDCFNLKTKRSSEMQEILETRQKTKP 109          
BLAST of NO28G01550 vs. NCBI_GenBank
Match: XP_020252997.1 (uncharacterized protein C227.17c [Asparagus officinalis])

HSP 1 Score: 68.9 bits (167), Expect = 1.500e-8
Identity = 38/87 (43.68%), Postives = 50/87 (57.47%), Query Frame = 0
Query:   51 SCTYIFDSLWFCLSPVYQAKEYYISGDFDSCEEKASALYMCLSNKVKKDPDMDRKIEAKLKRKPIQPCWTKRGEGKGDEVEETAPVW 138
            SCT  FD+LWFC SP +Q ++YY  G+FD+C  K SAL  CLS K K+  ++   +E + K KP    WT R       VEE +  W
Sbjct:   21 SCTKCFDALWFCYSPFHQMQQYYRYGEFDTCFGKWSALADCLSLKTKRSSEVQEILEEREKAKP--HIWTYR------TVEEASENW 99          
The following BLAST results are available for this feature:
BLAST of NO28G01550 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005853390.11.100e-1992.00hypothetical protein NGA_0476010 [Nannochloropsis ... [more]
XP_005854615.11.400e-1993.88hypothetical protein NGA_0476020, partial [Nannoch... [more]
XP_020681455.11.000e-942.86uncharacterized protein C227.17c isoform X1 [Dendr... [more]
XP_009390014.16.500e-943.68PREDICTED: uncharacterized protein C227.17c [Musa ... [more]
XP_019161988.18.500e-940.91PREDICTED: uncharacterized protein C227.17c-like [... [more]
XP_020106910.18.500e-941.76uncharacterized protein C227.17c isoform X1 [Anana... [more]
XP_022859136.18.500e-944.32uncharacterized protein C227.17c-like [Olea europa... [more]
XP_006366510.11.500e-841.38PREDICTED: uncharacterized protein C227.17c [Solan... [more]
XP_010243478.11.500e-848.44PREDICTED: uncharacterized protein LOC104587525 [N... [more]
XP_020252997.11.500e-843.68uncharacterized protein C227.17c [Asparagus offici... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR065ncniR065Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR101ngnoR101Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO28G01550.1NO28G01550.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609511gene_9887Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO28G01550.1NO28G01550.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO28G01550 ID=NO28G01550|Name=NO28G01550|organism=Nannochloropsis oceanica|type=gene|length=1914bp
CCCAACACCCCCCCCTAATTATTTACATCTCATCGTTCTCAACACCTACT
CACCAAGGATAGGGAATGGGCGCCGCTCCCTCTGCCGTTGTCAAACCGGC
CGTCATCTTGCCGCCTCCATCCTCGTCTCCCTCGTCGGAGTCCTCTATAG
GAGACGATTTCACCTCCTCCTCCTCCACCACCACCGCATCAGCCAACCTT
TGGACAAGCCCTACATCCTGCACATACATATTCGACTCCCTGTGGTTTTG
TCTGTCTCCGGTCTATCAAGCCAAGGAGTACTATATTTCGGGCGACTTTG
ATTCATGCGAGGAGAAGGCAAGCGCGCTCTACATGTGTCTCTCCAACAAG
gtaagaacgggcagaaggggagtaagggaaagtgaaaaggaaggagggag
gaatcgttcgtggtgattttgtcggtggatggtatgaggaggtgatcgac
gcagggagagaggggaccaagagtgaagctcgctagtgctacctccttcc
ctgtccccccacctcagttctcccttccttttttttttcgcgtattagGT
CAAGAAGGATCCAGACATGGACCGCAAGATTGAGGCCAAGCTGAAACGAA
AACCAATCCAACCATGTTGGACAAAAAGAGGGGAAGGGAAGGGGGACGAA
GTGGAGGAGACGGCGCCCGTGTGGGAGTTGAAGGAGAGGCCAGGCTGGTA
TTGAGATGTTTTGTACGGATCAAAAGTAAATAAATGATGATGAGGAAATG
ACTCGGGAGTACTGGAGTAGTGACGCTCAAGAAAGAGGGGGTGGATAGGT
GCTTGGCGCTTTGAAATCACATTAGTACGTGCGCGCAGTATTTACTTTAA
TGTATGCGTTTGAAATATGTACATACATATTCCATATATATATATATATA
TTCATATTATATATATATGATGCCCGATTTCAATTCCCTGAGCTTGCCTA
TCGCTTCTTCTATCGATCTCCTGTCGCGCTCTTAATAATTTGCATTGTTT
GTCCAAGCATTTGATTCGCCTCAGTACAACAGTCCCTCCCTCCCTGCCTC
CCTCCGTCACTCCCTTCGGCAGCAGCAGTAGTATCAGTCTCAATGTAAGT
CATTCATGTGCAGTACAAACTCCAAACACGTGTATCTGCCAACCATCTCT
GTATACTGTGTTCTCGCCTTTTCCTGCTCATCTGTATGTTGTAGACCGGC
GCGTATCTCTCTTCCATGTCCGCGGGATTTTTAAAAAAATATCTTGGCCG
TTACGCTCTCACTTTCAAACGTTGTCATCATCTTCCCTTGAACTGCCCTT
CTTTCTACACATGTACATTATCGCCTTCTACTGGGGTGAAGGCCGTCCAT
TCCCCTTCAGCTATCTCCTTTCTCTCCTGCCTCCCTCTTGTCCTTTTTCC
CTTTGCCGGTCTCTCTTTCCTGTGTCTACTGAGGGGAGGGCTGGGCTCTG
TCAAGCTCTTCGCGTCTTCCTCTTCCTCCATCACCTCCTCCTCCGCCATT
GGGCACTATCTCTCTTTCCCTCCCTCCCTCCCTTCCTCCCTCCTCTGCGA
CGACGGTTGCGATTCGAGGGACCGTTAAAGGTAACGGCAAATCCCGTTGC
AGCTTCTCCATTTGACGCACCACTTCTGCCTTGAGGCTTTGCACGGTATG
GGAGGAAGACGGGATGGGGCTACCGATCCGCACATACACTGTGGCGGGCC
CCATGAGCGATTCGTATATGGGCCACGCCTGCTCGGTGCCTGGTGATGGA
TCCGGAGGAGGTTGAAATAGAGAGGGGGGTATGGGGAAGAAGGAAACGGT
GTGGATGACCGAGAGGGAAAGAGATGGGCATACGGTGAGGATGAACAGAA
GGTGGGGGAGAGGAGGAGAGAGGGAGAGAAGGAGGGAGGGAGGGAGGGAC
GGAGGGAGGGAGGG
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protein sequence of NO28G01550.1

>NO28G01550.1-protein ID=NO28G01550.1-protein|Name=NO28G01550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=147bp
MGAAPSAVVKPAVILPPPSSSPSSESSIGDDFTSSSSTTTASANLWTSPT
SCTYIFDSLWFCLSPVYQAKEYYISGDFDSCEEKASALYMCLSNKVKKDP
DMDRKIEAKLKRKPIQPCWTKRGEGKGDEVEETAPVWELKERPGWY*
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Synonyms
Publications