NO28G01550.1, NO28G01550.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO28G01550.1
Unique NameNO28G01550.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1716
Alignment locationchr28:494121..496034 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:494121..496034 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO28G01550.1 vs.
Match: XP_005853390.1 (hypothetical protein NGA_0476010 [Nannochloropsis gaditana CCMP526]; EKU22972.1 hypothetical protein NGA_0476010 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 129.4 bits (324), Expect = 9.100e-27
Identity = 69/99 (69.70%), Postives = 84/99 (84.85%), Query Frame = 0 
Query:    1 MGAAPSAVVKPAVILPPPSSSPSSESSIGDDFT---SSSSTTTASANLWTSPTSCTYIFDSLWFCLSPVYQAKEYYISGDFDSCEEKASALYMCLSNKV 97
            MG+ PSAVVKPAVI+PPPS+S  S +++ DD     +SS ++  S ++ TSPTSCTYIFDSLWFCLSPVYQAKEYYISGDFD+CE+KASALYMCL+NK+
Sbjct:   14 MGSVPSAVVKPAVIVPPPSAS--SNATLPDDEVLSHASSYSSATSTSVLTSPTSCTYIFDSLWFCLSPVYQAKEYYISGDFDACEDKASALYMCLANKM 110
The following BLAST results are available for this feature:
BLAST of NO28G01550.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853390.19.100e-2769.70hypothetical protein NGA_0476010 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO28G01550NO28G01550Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO28G01550.1NO28G01550.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO28G01550.1.cds1NO28G01550.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01550.1.cds2NO28G01550.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO28G01550.1 ID=NO28G01550.1|Name=NO28G01550.1|organism=Nannochloropsis oceanica|type=mRNA|length=1716bp
CCCAACACCCCCCCCTAATTATTTACATCTCATCGTTCTCAACACCTACT
CACCAAGGATAGGGAATGGGCGCCGCTCCCTCTGCCGTTGTCAAACCGGC
CGTCATCTTGCCGCCTCCATCCTCGTCTCCCTCGTCGGAGTCCTCTATAG
GAGACGATTTCACCTCCTCCTCCTCCACCACCACCGCATCAGCCAACCTT
TGGACAAGCCCTACATCCTGCACATACATATTCGACTCCCTGTGGTTTTG
TCTGTCTCCGGTCTATCAAGCCAAGGAGTACTATATTTCGGGCGACTTTG
ATTCATGCGAGGAGAAGGCAAGCGCGCTCTACATGTGTCTCTCCAACAAG
GTCAAGAAGGATCCAGACATGGACCGCAAGATTGAGGCCAAGCTGAAACG
AAAACCAATCCAACCATGTTGGACAAAAAGAGGGGAAGGGAAGGGGGACG
AAGTGGAGGAGACGGCGCCCGTGTGGGAGTTGAAGGAGAGGCCAGGCTGG
TATTGAGATGTTTTGTACGGATCAAAAGTAAATAAATGATGATGAGGAAA
TGACTCGGGAGTACTGGAGTAGTGACGCTCAAGAAAGAGGGGGTGGATAG
GTGCTTGGCGCTTTGAAATCACATTAGTACGTGCGCGCAGTATTTACTTT
AATGTATGCGTTTGAAATATGTACATACATATTCCATATATATATATATA
TATTCATATTATATATATATGATGCCCGATTTCAATTCCCTGAGCTTGCC
TATCGCTTCTTCTATCGATCTCCTGTCGCGCTCTTAATAATTTGCATTGT
TTGTCCAAGCATTTGATTCGCCTCAGTACAACAGTCCCTCCCTCCCTGCC
TCCCTCCGTCACTCCCTTCGGCAGCAGCAGTAGTATCAGTCTCAATGTAA
GTCATTCATGTGCAGTACAAACTCCAAACACGTGTATCTGCCAACCATCT
CTGTATACTGTGTTCTCGCCTTTTCCTGCTCATCTGTATGTTGTAGACCG
GCGCGTATCTCTCTTCCATGTCCGCGGGATTTTTAAAAAAATATCTTGGC
CGTTACGCTCTCACTTTCAAACGTTGTCATCATCTTCCCTTGAACTGCCC
TTCTTTCTACACATGTACATTATCGCCTTCTACTGGGGTGAAGGCCGTCC
ATTCCCCTTCAGCTATCTCCTTTCTCTCCTGCCTCCCTCTTGTCCTTTTT
CCCTTTGCCGGTCTCTCTTTCCTGTGTCTACTGAGGGGAGGGCTGGGCTC
TGTCAAGCTCTTCGCGTCTTCCTCTTCCTCCATCACCTCCTCCTCCGCCA
TTGGGCACTATCTCTCTTTCCCTCCCTCCCTCCCTTCCTCCCTCCTCTGC
GACGACGGTTGCGATTCGAGGGACCGTTAAAGGTAACGGCAAATCCCGTT
GCAGCTTCTCCATTTGACGCACCACTTCTGCCTTGAGGCTTTGCACGGTA
TGGGAGGAAGACGGGATGGGGCTACCGATCCGCACATACACTGTGGCGGG
CCCCATGAGCGATTCGTATATGGGCCACGCCTGCTCGGTGCCTGGTGATG
GATCCGGAGGAGGTTGAAATAGAGAGGGGGGTATGGGGAAGAAGGAAACG
GTGTGGATGACCGAGAGGGAAAGAGATGGGCATACGGTGAGGATGAACAG
AAGGTGGGGGAGAGGAGGAGAGAGGGAGAGAAGGAGGGAGGGAGGGAGGG
ACGGAGGGAGGGAGGG
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protein sequence of NO28G01550.1

>NO28G01550.1-protein ID=NO28G01550.1-protein|Name=NO28G01550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=147bp
MGAAPSAVVKPAVILPPPSSSPSSESSIGDDFTSSSSTTTASANLWTSPT
SCTYIFDSLWFCLSPVYQAKEYYISGDFDSCEEKASALYMCLSNKVKKDP
DMDRKIEAKLKRKPIQPCWTKRGEGKGDEVEETAPVWELKERPGWY*
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mRNA from alignment at chr28:494121..496034-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO28G01550.1 ID=NO28G01550.1|Name=NO28G01550.1|organism=Nannochloropsis oceanica|type=mRNA|length=1914bp|location=Sequence derived from alignment at chr28:494121..496034- (Nannochloropsis oceanica)
CCCAACACCCCCCCCTAATTATTTACATCTCATCGTTCTCAACACCTACT
CACCAAGGATAGGGAATGGGCGCCGCTCCCTCTGCCGTTGTCAAACCGGC
CGTCATCTTGCCGCCTCCATCCTCGTCTCCCTCGTCGGAGTCCTCTATAG
GAGACGATTTCACCTCCTCCTCCTCCACCACCACCGCATCAGCCAACCTT
TGGACAAGCCCTACATCCTGCACATACATATTCGACTCCCTGTGGTTTTG
TCTGTCTCCGGTCTATCAAGCCAAGGAGTACTATATTTCGGGCGACTTTG
ATTCATGCGAGGAGAAGGCAAGCGCGCTCTACATGTGTCTCTCCAACAAG
GTAAGAACGGGCAGAAGGGGAGTAAGGGAAAGTGAAAAGGAAGGAGGGAG
GAATCGTTCGTGGTGATTTTGTCGGTGGATGGTATGAGGAGGTGATCGAC
GCAGGGAGAGAGGGGACCAAGAGTGAAGCTCGCTAGTGCTACCTCCTTCC
CTGTCCCCCCACCTCAGTTCTCCCTTCCTTTTTTTTTTCGCGTATTAGGT
CAAGAAGGATCCAGACATGGACCGCAAGATTGAGGCCAAGCTGAAACGAA
AACCAATCCAACCATGTTGGACAAAAAGAGGGGAAGGGAAGGGGGACGAA
GTGGAGGAGACGGCGCCCGTGTGGGAGTTGAAGGAGAGGCCAGGCTGGTA
TTGAGATGTTTTGTACGGATCAAAAGTAAATAAATGATGATGAGGAAATG
ACTCGGGAGTACTGGAGTAGTGACGCTCAAGAAAGAGGGGGTGGATAGGT
GCTTGGCGCTTTGAAATCACATTAGTACGTGCGCGCAGTATTTACTTTAA
TGTATGCGTTTGAAATATGTACATACATATTCCATATATATATATATATA
TTCATATTATATATATATGATGCCCGATTTCAATTCCCTGAGCTTGCCTA
TCGCTTCTTCTATCGATCTCCTGTCGCGCTCTTAATAATTTGCATTGTTT
GTCCAAGCATTTGATTCGCCTCAGTACAACAGTCCCTCCCTCCCTGCCTC
CCTCCGTCACTCCCTTCGGCAGCAGCAGTAGTATCAGTCTCAATGTAAGT
CATTCATGTGCAGTACAAACTCCAAACACGTGTATCTGCCAACCATCTCT
GTATACTGTGTTCTCGCCTTTTCCTGCTCATCTGTATGTTGTAGACCGGC
GCGTATCTCTCTTCCATGTCCGCGGGATTTTTAAAAAAATATCTTGGCCG
TTACGCTCTCACTTTCAAACGTTGTCATCATCTTCCCTTGAACTGCCCTT
CTTTCTACACATGTACATTATCGCCTTCTACTGGGGTGAAGGCCGTCCAT
TCCCCTTCAGCTATCTCCTTTCTCTCCTGCCTCCCTCTTGTCCTTTTTCC
CTTTGCCGGTCTCTCTTTCCTGTGTCTACTGAGGGGAGGGCTGGGCTCTG
TCAAGCTCTTCGCGTCTTCCTCTTCCTCCATCACCTCCTCCTCCGCCATT
GGGCACTATCTCTCTTTCCCTCCCTCCCTCCCTTCCTCCCTCCTCTGCGA
CGACGGTTGCGATTCGAGGGACCGTTAAAGGTAACGGCAAATCCCGTTGC
AGCTTCTCCATTTGACGCACCACTTCTGCCTTGAGGCTTTGCACGGTATG
GGAGGAAGACGGGATGGGGCTACCGATCCGCACATACACTGTGGCGGGCC
CCATGAGCGATTCGTATATGGGCCACGCCTGCTCGGTGCCTGGTGATGGA
TCCGGAGGAGGTTGAAATAGAGAGGGGGGTATGGGGAAGAAGGAAACGGT
GTGGATGACCGAGAGGGAAAGAGATGGGCATACGGTGAGGATGAACAGAA
GGTGGGGGAGAGGAGGAGAGAGGGAGAGAAGGAGGGAGGGAGGGAGGGAC
GGAGGGAGGGAGGG
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Coding sequence (CDS) from alignment at chr28:494121..496034-

>NO28G01550.1 ID=NO28G01550.1|Name=NO28G01550.1|organism=Nannochloropsis oceanica|type=CDS|length=441bp|location=Sequence derived from alignment at chr28:494121..496034- (Nannochloropsis oceanica)
ATGGGCGCCGCTCCCTCTGCCGTTGTCAAACCGGCCGTCATCTTGCCGCC
TCCATCCTCGTCTCCCTCGTCGGAGTCCTCTATAGGAGACGATTTCACCT
CCTCCTCCTCCACCACCACCGCATCAGCCAACCTTTGGACAAGCCCTACA
TCCTGCACATACATATTCGACTCCCTGTGGTTTTGTCTGTCTCCGGTCTA
TCAAGCCAAGGAGTACTATATTTCGGGCGACTTTGATTCATGCGAGGAGA
AGGCAAGCGCGCTCTACATGTGTCTCTCCAACAAGGTCAAGAAGGATCCA
GACATGGACCGCAAGATTGAGGCCAAGCTGAAACGAAAACCAATCCAACC
ATGTTGGACAAAAAGAGGGGAAGGGAAGGGGGACGAAGTGGAGGAGACGG
CGCCCGTGTGGGAGTTGAAGGAGAGGCCAGGCTGGTATTGA
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Synonyms
Publications