NO28G01450, NO28G01450 (gene) Nannochloropsis oceanica

Overview
NameNO28G01450
Unique NameNO28G01450
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2431
Alignment locationchr28:455930..458360 +

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Properties
Property NameValue
DescriptionTetratricopeptide repeat (TPR)-like superfamily protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:455930..458360 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0016740transferase activity
GO:0008168methyltransferase activity
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom
Vocabulary: Biological Process
TermDefinition
GO:0032259methylation
Homology
BLAST of NO28G01450 vs. NCBI_GenBank
Match: KOO25363.1 (protein arginine methyltransferase [Chrysochromulina sp. CCMP291])

HSP 1 Score: 80.1 bits (196), Expect = 1.400e-11
Identity = 69/250 (27.60%), Postives = 95/250 (38.00%), Query Frame = 0
Query:   55 KAPPSDVLQRAVALLRDKGNEAFRRKRFLEAIDFYGQALAGAPDDKTLYANRCLARLKKEEGKEGVKEGGXXXXXXXXXXXXEELLLALADAERALQLDPSWLKGCHRKAVCLYRLGKWKDAKPYLVRLLSDLPDDRECQAMLKTVLEKL-----TPTTTGSSXXXXXXXXXSQIQK-GEGXXXXXXXXXXXXXXXLSRKVF---------YPSQEWYTRNLIAPVLVSQLKAYSEMDAPRRLIETLSDS 290
            K  P + L+ A A+ RD GNEA +  R  EA + Y   LA  P D  +  NR L  L   E   G +               E   LAL D   A+QL P W KG +R    L +  KWK++     ++    PD+ E    L    E L                      +++QK  E                L +  F           S++WYT + +   L S L A+S + APR  +E L DS
Sbjct:   45 KQIPKEQLEHAAAVCRDMGNEAVKAGRHEEAAEHYTSVLAAKPYDHEVLCNRALCYLHLGETIGGER-------------MDEYFQLALHDTALAVQLKPDWPKGLYRFGCALMKTKKWKESAAVFTKVCELEPDNVEASGRLIQARETLQMVLNVERVNDPHWMHKPAPEKTELQKRAEAAQAKNDEAMTGLREELGKSEFDFALLERTMTKSEKWYTDSTMVKALASHLMAHSAILAPRSELEALLDS 281          
BLAST of NO28G01450 vs. NCBI_GenBank
Match: PRW57157.1 (arginine methyltransferase [Chlorella sorokiniana])

HSP 1 Score: 75.9 bits (185), Expect = 2.700e-10
Identity = 51/145 (35.17%), Postives = 69/145 (47.59%), Query Frame = 0
Query:   52 LGIKAPPSD-VLQRAVALLRDKGNEAFRRKRFLEAIDFYGQALAGAPDDKTLYANRCLARLKKEEGKEGVKEGGXXXXXXXXXXXXEELLLALADAERALQLDPSWLKGCHRKAVCLYRLGKWKDAKPYLVRLLSDLPDDRECQA 196
            L ++ PPSD +LQ AV   R  GN+AFR K + +A+  Y QALAGAP+D TL+ NR  A L       G+ +                   A  DA RA+ L P W K  +R       LG+W +A+  L + L   P   +  A
Sbjct:   23 LAVQGPPSDELLQHAVEACRAAGNKAFRAKDYRDAVKLYTQALAGAPEDGTLHGNRSAAHLAM-----GLLDD------------------AAWDARRAVSLRPDWPKAYYRLGCACLALGQWGEAEAALAQGLQLEPGAEDMAA 144          
BLAST of NO28G01450 vs. NCBI_GenBank
Match: CCA21230.1 (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 75.1 bits (183), Expect = 4.600e-10
Identity = 45/138 (32.61%), Postives = 65/138 (47.10%), Query Frame = 0
Query:   54 IKAPPSDVLQRAVALLRDKGNEAFRRKRFLEAIDFYGQALAGAPDDKTLYANRCLARLKKEEGKEGVKEGGXXXXXXXXXXXXEELLLALADAERALQLDPSWLKGCHRKAVCLYRLGKWKDAKPYLVRLLSDLPDDR 192
            I+ PPS          +++GN+AF +K   EA+ FY QA+   P D TLY NRC A L   E ++                       AL DA  A +L+P W K  +R+A CL  LG+++DA       +   P+D+
Sbjct:  339 IENPPSPEALMKANAFKEEGNQAFLKKNHAEAVGFYSQAIELNPIDPTLYTNRCAAHLTAGEPEK-----------------------ALHDARVAKKLNPKWTKAIYREAQCLEALGQYEDAACVFWNAVQLAPEDK 453          
BLAST of NO28G01450 vs. NCBI_GenBank
Match: CCI42657.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 72.0 bits (175), Expect = 3.900e-9
Identity = 44/138 (31.88%), Postives = 67/138 (48.55%), Query Frame = 0
Query:   54 IKAPPSDVLQRAVALLRDKGNEAFRRKRFLEAIDFYGQALAGAPDDKTLYANRCLARLKKEEGKEGVKEGGXXXXXXXXXXXXEELLLALADAERALQLDPSWLKGCHRKAVCLYRLGKWKDAKPYLVRLLSDLPDDR 192
            + +P  + L +A A  +++GN+AF RK   EA+DFY QA+   P D  LY+NRC A L   + ++                       AL DA  A +L+P W K  +R+A CL  L +++DA       +   P D+
Sbjct:  341 VDSPSPEALMKAKA-FKEEGNKAFLRKNHAEAVDFYSQAIELDPSDAILYSNRCAAYLSAGDPQK-----------------------ALQDAYVAKKLNPKWTKAIYREAQCLEALERYEDAACVFWNAVKLAPGDK 454          
BLAST of NO28G01450 vs. NCBI_GenBank
Match: XP_011397910.1 (Protein arginine N-methyltransferase 7 [Auxenochlorella protothecoides] >KFM25022.1 Protein arginine N-methyltransferase 7 [Auxenochlorella protothecoides])

HSP 1 Score: 72.0 bits (175), Expect = 3.900e-9
Identity = 52/150 (34.67%), Postives = 69/150 (46.00%), Query Frame = 0
Query:   53 GIKAPPSD--VLQRAVALLRDKGNEAFRRKRFLEAIDFYGQALAGAPDDKTLYANRCLARLKKEEGKEGVKEGGXXXXXXXXXXXXEELLLALADAERALQLDPSWLKGCHRKAVCLYRLGKWKDAKPYLVRLLSDLPDDRECQAMLKTV 201
            G++   +D   L   VA  +  GNEAFR  R+ EAI  Y QA+AG   D  LY+NR  A L      EG+ +                   AL DAE+ + L PSW K  +R+A     L +W+ A+  LV+ L   P D    A L  V
Sbjct:   28 GVRLKDTDPRALAFVVAQSKSAGNEAFRTHRYKEAIRLYSQAIAGDESDAALYSNRSAAFL-----AEGLND------------------QALWDAEKCIALSPSWPKAHYRRACAAMSLCQWQGARQALVKGLELAPGDAAMVARLAEV 154          
BLAST of NO28G01450 vs. NCBI_GenBank
Match: PSC68184.1 (arginine methyltransferase [Micractinium conductrix])

HSP 1 Score: 70.1 bits (170), Expect = 1.500e-8
Identity = 51/158 (32.28%), Postives = 64/158 (40.51%), Query Frame = 0
Query:   46 DAAFSSLGIKAPPSDVLQRAVALLRDKGNEAFRRKRFLEAIDFYGQALAGAPDDKTLYANRCLARLKKEEGKEGVKEGGXXXXXXXXXXXXEELLLALADAERALQLDPSWLKGCHRKAVCLYRLGKWKDAKPYLVRLLSDLPDDRECQAMLKTVLEK 204
            +AA   + ++     +L   V   R  GN AF+ KR+ EA+  Y QALAGAP D  LYANR  A L       G+ E                   A  D  +A  L P W K  +R    L  L  W  A   L R L   P   +  A LK   E+
Sbjct:   26 EAAMGGVSLQDTDPALLDFLVQRCRQAGNAAFKEKRYKEAVQMYSQALAGAPKDAALYANRSAAYLSL-----GLYE------------------QAAWDGRKAAALRPGWAKAHYRLGCALLALSSWGAAAAALQRALELEPGSGDVAARLKEAEER 160          
BLAST of NO28G01450 vs. NCBI_GenBank
Match: XP_002908636.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY61719.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 69.7 bits (169), Expect = 1.900e-8
Identity = 48/159 (30.19%), Postives = 71/159 (44.65%), Query Frame = 0
Query:   56 APPSDVLQRAVALLRDKGNEAFRRKRFLEAIDFYGQALAGAPDDKTLYANRCLA--RLKKEEGKEGVKEGGXXXXXXXXXXXXEELLLALADAERALQLDPSWLKGCHRKAVCLYRLGKWKDAKPYLVRLLSDLPDDRECQAMLKTVLEKLTPTTTGSS 213
            A   + ++   A L+ KGN+AF ++RF  A+ +Y QA+   P    LY NR  A  RLKK +                         LAL D++ A+ L   W+KG +R+   L  L +++DA     R +   P D +     K + EK    T GSS
Sbjct:  210 AKEEESVEAQAAALKAKGNDAFAKRRFQAAVQYYSQAIEVDPTSHILYGNRAAAYHRLKKYK-------------------------LALEDSDVAVSLHEPWVKGHYRRGCALAALEQFEDAAEAYERAMELCPTDEKLGQNAKQMREKAIAKTNGSS 343          
BLAST of NO28G01450 vs. NCBI_GenBank
Match: OQR89137.1 (hypothetical protein THRCLA_09904 [Thraustotheca clavata])

HSP 1 Score: 68.6 bits (166), Expect = 4.300e-8
Identity = 41/148 (27.70%), Postives = 68/148 (45.95%), Query Frame = 0
Query:   56 APPSDVLQRAVALLRDKGNEAFRRKRFLEAIDFYGQALAGAPDDKTLYANRCLARLKKEEGKEGVKEGGXXXXXXXXXXXXEELLLALADAERALQLDPSWLKGCHRKAVCLYRLGKWKDAKPYLVRLLSDLPDDRECQAMLKTVLEK 204
            AP     +     +++KGN  F +K+++E+I+ Y QALA  P D  LY+NRC A L   E K+                       AL D   + +L P+W K   R+  CL  L +++DA   +   +   PDD+  +   +  +++
Sbjct:  348 APVDSATEAKANAIKEKGNALFVKKQYVESIELYTQALALNPCDALLYSNRCAAYLAAGEAKK-----------------------ALHDVRISKKLKPNWAKALFREGQCLEALKRYEDAAMAMWSAMQLAPDDKVIKKRFQACVQR 472          
BLAST of NO28G01450 vs. NCBI_GenBank
Match: EWM23660.1 (serine threonine-protein phosphatase 5 [Nannochloropsis gaditana])

HSP 1 Score: 68.2 bits (165), Expect = 5.600e-8
Identity = 44/148 (29.73%), Postives = 68/148 (45.95%), Query Frame = 0
Query:   51 SLGIKAPPSDVLQRAVALLRDKGNEAFRRKRFLEAIDFYGQALAGAPDDKTLYANRCLARLKKEEGKEGVKEGGXXXXXXXXXXXXEELLLALADAERALQLDPSWLKGCHRKAVCLYRLGKWKDAKPYLVRLLSDLPDDRECQAMLK 199
            ++G    PS   +     L+++GN A     F +A ++Y QALA  P    LY+NR +A +K                        E   +A+ DAE A+ LDP +LK  +R+    Y LGK+K+A      ++   P DR+  A L+
Sbjct:   12 TMGDAHGPSKATKETATALKEEGNRALHDNHFEQATEYYTQALALHP-TAVLYSNRAMAAIK-----------------------MENYGIAIQDAEEAIALDPGYLKAFYRRGSAKYALGKYKEALRDFKHVVKVHPRDRDAVAKLR 135          
BLAST of NO28G01450 vs. NCBI_GenBank
Match: XP_015185911.1 (PREDICTED: RNA polymerase II-associated protein 3-like isoform X1 [Polistes dominula])

HSP 1 Score: 68.2 bits (165), Expect = 5.600e-8
Identity = 44/137 (32.12%), Postives = 66/137 (48.18%), Query Frame = 0
Query:   70 RDKGNEAFRRKRFLEAIDFYGQALAGAPDDKTLYANRCLARLKKEEGKEGVKEGGXXXXXXXXXXXXEELLLALADAERALQLDPSWLKGCHRKAVCLYRLGKWKDAKPYLVRLLSDLPDDRECQAMLKTVLEKLTP 207
            + KGN   +++++  AI  Y +A+   P D   YANR L  LKK                       + L  A AD   A+QLD  ++K  HR+A+    L ++K+AK  L ++L   P ++E QA L  V +KL P
Sbjct:  135 KQKGNILVQQQKWDSAIACYSEAIKVFPYDAVFYANRALCHLKK-----------------------DSLYSAEADCTTAIQLDSQYVKAYHRRALSRLELKQYKEAKEDLEKILQLEPSNKEAQAKLAQVNKKLEP 248          
The following BLAST results are available for this feature:
BLAST of NO28G01450 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
KOO25363.11.400e-1127.60protein arginine methyltransferase [Chrysochromuli... [more]
PRW57157.12.700e-1035.17arginine methyltransferase [Chlorella sorokiniana][more]
CCA21230.14.600e-1032.61conserved hypothetical protein [Albugo laibachii N... [more]
CCI42657.13.900e-931.88unnamed protein product [Albugo candida][more]
XP_011397910.13.900e-934.67Protein arginine N-methyltransferase 7 [Auxenochlo... [more]
PSC68184.11.500e-832.28arginine methyltransferase [Micractinium conductri... [more]
XP_002908636.11.900e-830.19conserved hypothetical protein [Phytophthora infes... [more]
OQR89137.14.300e-827.70hypothetical protein THRCLA_09904 [Thraustotheca c... [more]
EWM23660.15.600e-829.73serine threonine-protein phosphatase 5 [Nannochlor... [more]
XP_015185911.15.600e-832.12PREDICTED: RNA polymerase II-associated protein 3-... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR065ncniR065Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO28G01450.1NO28G01450.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|315339gene_9877Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO28G01450.1NO28G01450.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO28G01450 ID=NO28G01450|Name=NO28G01450|organism=Nannochloropsis oceanica|type=gene|length=2431bp
ATGCCGATAGTGCCGTCCTCCTCTTCCTCGTCCTCGTCCTCCTTCTCCTC
GTCCTCCACGCTTAGCCGGCCTTCCCCAGTCAATGCCAGCAGCAACGGCA
GCAGCAGCAGCAGCAGCAGCACTAATAGCAACCTCGACGCCGCCTTCTCA
TCCTTAGGCATAAAGgtacactcaattctacctttcttttatgtctcgct
cgtccctaggctgggagaagcactttctttatatgcatactcacgcgtag
tcgcaagcttgcatgtcccctgccctccttcccctagctatctgcctcac
tccgtccatgtttttccacgtcaatttagcaagcaatggctgtctcacgg
cacaacaatcacgtggctcttcaccactttttggcccacacctcaaaccc
cctcttcccctttctcctctccctttcaaccttcctcccccccgtcagGC
CCCCCCTTCTGACGTGCTCCAGCGGGCAGTGGCCCTGTTGCGGGACAAAG
GCAACGAAGCCTTCCGCCGCAAAAGGTTTTTGGAAGCTATCGgtaagaaa
aggaagagaaaaagcgacgaaacaaaggccgggtgtgagggaaggagagg
gcagacgaggaccgccactaggtcaagacctgtgtaaggcgattatgacg
acccttcatacatacatatacatacatattttaaatactacttacccctc
ctcaataccatggctccctccctcgattcatccctagATTTCTATGGGCA
AGCCCTCGCGGGAGCACCGGACGACAAGACGCTCTATGCCAATCGCTGCC
TGGCCCGGCTCAAGAAGGAGGAAGGAAAGGAGGGCGTGAAGGAGGGCGGG
AGCGGGGGAAAAGAAAATTCGAAGGAAGGAGGGACGGAGGAGCTATTGTT
GGCACTGGCCGATGCAGAGAGGGCATTGCAGgtgaggtggaaagaaggaa
gggagttaggggtatatctacaatcatttcatcgtcgacttacctctccc
ttcctccctccctccatccatccatccctacctagCTGGATCCTAGCTGG
CTGAAAGGATGTCACCGCAAGGCTGTCTGTCTCTACAGACTCGGAAAGTG
GAAGGACGCCAAGCCGTACCTTGTCAGgtggggagggagggagggaggga
gggagggagggaggggcgggaggctgcctgcgagggagggaaggagggag
gaaagaagggaggaggcgctgcattcagtcacggcaccatgtgcacaact
gagatcatcattcacctgatgtttgatatttctcgtatcctccctccccc
cccttcagGCTGCTCTCGGACCTGCCTGACGACAGGGAGTGTCAAGCCAT
GCTTAAAACCGTCCTCGAGAAGCTgtacgtgccctccctccctccctccc
tccttcacttccttcctgcatctctccctccctccctccctccctccctc
cctccctccctccttcatttgctgtcgtctttccttctctattcttgcct
tttccgcttagacacgccctacctccctccctccccccccactcgctccc
tcccttcctcccagCACACCCACCACCACCGGCAGCAGCAACAACAAAAG
CGGCAGAAGTGGCGGGTCCCAGATCCAGAAGGGAGAGGGGGAGGACGGGA
AGGAGGAAGGGGGGGAGGAAGAGACGACCGTTGTCTTGTCCCGGAAAGTG
TTTTATCCCTCGCAGgtagggagggagggagagaggggagggaggaaagg
gaagagagaaatgggagggaaggaggaggggagggcgagaagggagtagc
tgaagggaggggggggaggagggagggaagggaaggagagaaggagggag
ggtagaaggtgaagattataacatatttgcgtccgtaaacactgaccttc
tctccctccctccctccctccctccctcccttccttcctctgccagGAGT
GGTATACGCGGAATCTGATTGCTCCCGTGCTGGTGAGTCAGCTGAAGGCT
TACTCGGAGATGGACGCCCCCCGGCGACTGATCGAGgtagggagggaggg
aggcaaggagggagggagcgagggggggaggggtgatgaccttttatcgc
ttttattttccatccgtccttctcatgctccctccgtcccgccctccctc
cctccctgaattcttccatcctccatcctcttctctgtccctccttccat
cttcatcctccctccctccctccctccctccctccctccctccctccctc
cctccctccctccctccctccctccctccctccccagACCCTTTCCGATT
CCCTCCTGATAAAAAAATGGCGTACCTTCCTCTCCTCCTTCCCTTCCTCC
TCCTCTCCCCCTTCCTCCTCCCCCTCCTCCCCTGTCCTTCCTCGGGAGGA
GGAGACGGAGCCGTTGAAGAGGTCAGGGTAA
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protein sequence of NO28G01450.1

>NO28G01450.1-protein ID=NO28G01450.1-protein|Name=NO28G01450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=332bp
MPIVPSSSSSSSSSFSSSSTLSRPSPVNASSNGSSSSSSSTNSNLDAAFS
SLGIKAPPSDVLQRAVALLRDKGNEAFRRKRFLEAIDFYGQALAGAPDDK
TLYANRCLARLKKEEGKEGVKEGGSGGKENSKEGGTEELLLALADAERAL
QLDPSWLKGCHRKAVCLYRLGKWKDAKPYLVRLLSDLPDDRECQAMLKTV
LEKLTPTTTGSSNNKSGRSGGSQIQKGEGEDGKEEGGEEETTVVLSRKVF
YPSQEWYTRNLIAPVLVSQLKAYSEMDAPRRLIETLSDSLLIKKWRTFLS
SFPSSSSPPSSSPSSPVLPREEETEPLKRSG*
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Synonyms
Publications