NO28G01450.1, NO28G01450.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO28G01450.1
Unique NameNO28G01450.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length996
Alignment locationchr28:455930..458360 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:455930..458360 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO28G01450.1 vs.
Match: KOO25363.1 (protein arginine methyltransferase [Chrysochromulina sp. CCMP291])

HSP 1 Score: 81.3 bits (199), Expect = 6.400e-12
Identity = 79/271 (29.15%), Postives = 110/271 (40.59%), Query Frame = 0 
Query:   34 SSSSSSSTNSNLDAAFSSLGIKAPPSDVLQRAVALLRDKGNEAFRRKRFLEAIDFYGQALAGAPDDKTLYANRCLARLKKEEGKEGVKEGGSGGKENSKEGGTEELLLALADAERALQLDPSWLKGCHRKAVCLYRLGKWKDAKPYLVRLLSDLPDDRECQAMLKTVLEKLTPTTTGSSNNK--------------SGRSGGSQIQKGEGEDG-KEEGGEEETTVVLSRKVFYPSQEWYTRNLIAPVLVSQLKAYSEMDAPRRLIETLSDS 290
            S  SS     +++ AF  +     P + L+ A A+ RD GNEA +  R  EA + Y   LA  P D  +  NR L  L   E   G             E   E   LAL D   A+QL P W KG +R    L +  KWK++     ++    PD+ E    L    E L         N                 R+  +Q +  E   G +EE G+ E    L  +    S++WYT + +   L S L A+S + APR  +E L DS
Sbjct:   29 SHKSSEGAIEDINEAFKQI-----PKEQLEHAAAVCRDMGNEAVKAGRHEEAAEHYTSVLAAKPYDHEVLCNRALCYLHLGETIGG-------------ERMDEYFQLALHDTALAVQLKPDWPKGLYRFGCALMKTKKWKESAAVFTKVCELEPDNVEASGRLIQARETLQMVLNVERVNDPHWMHKPAPEKTELQKRAEAAQAKNDEAMTGLREELGKSEFDFALLERTMTKSEKWYTDSTMVKALASHLMAHSAILAPRSELEALLDS 281
The following BLAST results are available for this feature:
BLAST of NO28G01450.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
KOO25363.16.400e-1229.15protein arginine methyltransferase [Chrysochromuli... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO28G01450NO28G01450Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO28G01450.1NO28G01450.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO28G01450.1.cds1NO28G01450.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01450.1.cds2NO28G01450.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01450.1.cds3NO28G01450.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01450.1.cds4NO28G01450.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01450.1.cds5NO28G01450.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01450.1.cds6NO28G01450.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01450.1.cds7NO28G01450.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01450.1.cds8NO28G01450.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO28G01450.1 ID=NO28G01450.1|Name=NO28G01450.1|organism=Nannochloropsis oceanica|type=mRNA|length=996bp
ATGCCGATAGTGCCGTCCTCCTCTTCCTCGTCCTCGTCCTCCTTCTCCTC
GTCCTCCACGCTTAGCCGGCCTTCCCCAGTCAATGCCAGCAGCAACGGCA
GCAGCAGCAGCAGCAGCAGCACTAATAGCAACCTCGACGCCGCCTTCTCA
TCCTTAGGCATAAAGGCCCCCCCTTCTGACGTGCTCCAGCGGGCAGTGGC
CCTGTTGCGGGACAAAGGCAACGAAGCCTTCCGCCGCAAAAGGTTTTTGG
AAGCTATCGATTTCTATGGGCAAGCCCTCGCGGGAGCACCGGACGACAAG
ACGCTCTATGCCAATCGCTGCCTGGCCCGGCTCAAGAAGGAGGAAGGAAA
GGAGGGCGTGAAGGAGGGCGGGAGCGGGGGAAAAGAAAATTCGAAGGAAG
GAGGGACGGAGGAGCTATTGTTGGCACTGGCCGATGCAGAGAGGGCATTG
CAGCTGGATCCTAGCTGGCTGAAAGGATGTCACCGCAAGGCTGTCTGTCT
CTACAGACTCGGAAAGTGGAAGGACGCCAAGCCGTACCTTGTCAGGCTGC
TCTCGGACCTGCCTGACGACAGGGAGTGTCAAGCCATGCTTAAAACCGTC
CTCGAGAAGCTCACACCCACCACCACCGGCAGCAGCAACAACAAAAGCGG
CAGAAGTGGCGGGTCCCAGATCCAGAAGGGAGAGGGGGAGGACGGGAAGG
AGGAAGGGGGGGAGGAAGAGACGACCGTTGTCTTGTCCCGGAAAGTGTTT
TATCCCTCGCAGGAGTGGTATACGCGGAATCTGATTGCTCCCGTGCTGGT
GAGTCAGCTGAAGGCTTACTCGGAGATGGACGCCCCCCGGCGACTGATCG
AGACCCTTTCCGATTCCCTCCTGATAAAAAAATGGCGTACCTTCCTCTCC
TCCTTCCCTTCCTCCTCCTCTCCCCCTTCCTCCTCCCCCTCCTCCCCTGT
CCTTCCTCGGGAGGAGGAGACGGAGCCGTTGAAGAGGTCAGGGTAA
back to top

protein sequence of NO28G01450.1

>NO28G01450.1-protein ID=NO28G01450.1-protein|Name=NO28G01450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=332bp
MPIVPSSSSSSSSSFSSSSTLSRPSPVNASSNGSSSSSSSTNSNLDAAFS
SLGIKAPPSDVLQRAVALLRDKGNEAFRRKRFLEAIDFYGQALAGAPDDK
TLYANRCLARLKKEEGKEGVKEGGSGGKENSKEGGTEELLLALADAERAL
QLDPSWLKGCHRKAVCLYRLGKWKDAKPYLVRLLSDLPDDRECQAMLKTV
LEKLTPTTTGSSNNKSGRSGGSQIQKGEGEDGKEEGGEEETTVVLSRKVF
YPSQEWYTRNLIAPVLVSQLKAYSEMDAPRRLIETLSDSLLIKKWRTFLS
SFPSSSSPPSSSPSSPVLPREEETEPLKRSG*
back to top

mRNA from alignment at chr28:455930..458360+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO28G01450.1 ID=NO28G01450.1|Name=NO28G01450.1|organism=Nannochloropsis oceanica|type=mRNA|length=2431bp|location=Sequence derived from alignment at chr28:455930..458360+ (Nannochloropsis oceanica)
ATGCCGATAGTGCCGTCCTCCTCTTCCTCGTCCTCGTCCTCCTTCTCCTC
GTCCTCCACGCTTAGCCGGCCTTCCCCAGTCAATGCCAGCAGCAACGGCA
GCAGCAGCAGCAGCAGCAGCACTAATAGCAACCTCGACGCCGCCTTCTCA
TCCTTAGGCATAAAGGTACACTCAATTCTACCTTTCTTTTATGTCTCGCT
CGTCCCTAGGCTGGGAGAAGCACTTTCTTTATATGCATACTCACGCGTAG
TCGCAAGCTTGCATGTCCCCTGCCCTCCTTCCCCTAGCTATCTGCCTCAC
TCCGTCCATGTTTTTCCACGTCAATTTAGCAAGCAATGGCTGTCTCACGG
CACAACAATCACGTGGCTCTTCACCACTTTTTGGCCCACACCTCAAACCC
CCTCTTCCCCTTTCTCCTCTCCCTTTCAACCTTCCTCCCCCCCGTCAGGC
CCCCCCTTCTGACGTGCTCCAGCGGGCAGTGGCCCTGTTGCGGGACAAAG
GCAACGAAGCCTTCCGCCGCAAAAGGTTTTTGGAAGCTATCGGTAAGAAA
AGGAAGAGAAAAAGCGACGAAACAAAGGCCGGGTGTGAGGGAAGGAGAGG
GCAGACGAGGACCGCCACTAGGTCAAGACCTGTGTAAGGCGATTATGACG
ACCCTTCATACATACATATACATACATATTTTAAATACTACTTACCCCTC
CTCAATACCATGGCTCCCTCCCTCGATTCATCCCTAGATTTCTATGGGCA
AGCCCTCGCGGGAGCACCGGACGACAAGACGCTCTATGCCAATCGCTGCC
TGGCCCGGCTCAAGAAGGAGGAAGGAAAGGAGGGCGTGAAGGAGGGCGGG
AGCGGGGGAAAAGAAAATTCGAAGGAAGGAGGGACGGAGGAGCTATTGTT
GGCACTGGCCGATGCAGAGAGGGCATTGCAGGTGAGGTGGAAAGAAGGAA
GGGAGTTAGGGGTATATCTACAATCATTTCATCGTCGACTTACCTCTCCC
TTCCTCCCTCCCTCCATCCATCCATCCCTACCTAGCTGGATCCTAGCTGG
CTGAAAGGATGTCACCGCAAGGCTGTCTGTCTCTACAGACTCGGAAAGTG
GAAGGACGCCAAGCCGTACCTTGTCAGGTGGGGAGGGAGGGAGGGAGGGA
GGGAGGGAGGGAGGGGCGGGAGGCTGCCTGCGAGGGAGGGAAGGAGGGAG
GAAAGAAGGGAGGAGGCGCTGCATTCAGTCACGGCACCATGTGCACAACT
GAGATCATCATTCACCTGATGTTTGATATTTCTCGTATCCTCCCTCCCCC
CCCTTCAGGCTGCTCTCGGACCTGCCTGACGACAGGGAGTGTCAAGCCAT
GCTTAAAACCGTCCTCGAGAAGCTGTACGTGCCCTCCCTCCCTCCCTCCC
TCCTTCACTTCCTTCCTGCATCTCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCTTCATTTGCTGTCGTCTTTCCTTCTCTATTCTTGCCT
TTTCCGCTTAGACACGCCCTACCTCCCTCCCTCCCCCCCCACTCGCTCCC
TCCCTTCCTCCCAGCACACCCACCACCACCGGCAGCAGCAACAACAAAAG
CGGCAGAAGTGGCGGGTCCCAGATCCAGAAGGGAGAGGGGGAGGACGGGA
AGGAGGAAGGGGGGGAGGAAGAGACGACCGTTGTCTTGTCCCGGAAAGTG
TTTTATCCCTCGCAGGTAGGGAGGGAGGGAGAGAGGGGAGGGAGGAAAGG
GAAGAGAGAAATGGGAGGGAAGGAGGAGGGGAGGGCGAGAAGGGAGTAGC
TGAAGGGAGGGGGGGGAGGAGGGAGGGAAGGGAAGGAGAGAAGGAGGGAG
GGTAGAAGGTGAAGATTATAACATATTTGCGTCCGTAAACACTGACCTTC
TCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTTCCTCTGCCAGGAGT
GGTATACGCGGAATCTGATTGCTCCCGTGCTGGTGAGTCAGCTGAAGGCT
TACTCGGAGATGGACGCCCCCCGGCGACTGATCGAGGTAGGGAGGGAGGG
AGGCAAGGAGGGAGGGAGCGAGGGGGGGAGGGGTGATGACCTTTTATCGC
TTTTATTTTCCATCCGTCCTTCTCATGCTCCCTCCGTCCCGCCCTCCCTC
CCTCCCTGAATTCTTCCATCCTCCATCCTCTTCTCTGTCCCTCCTTCCAT
CTTCATCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCAGACCCTTTCCGATT
CCCTCCTGATAAAAAAATGGCGTACCTTCCTCTCCTCCTTCCCTTCCTCC
TCCTCTCCCCCTTCCTCCTCCCCCTCCTCCCCTGTCCTTCCTCGGGAGGA
GGAGACGGAGCCGTTGAAGAGGTCAGGGTAA
back to top

Coding sequence (CDS) from alignment at chr28:455930..458360+

>NO28G01450.1 ID=NO28G01450.1|Name=NO28G01450.1|organism=Nannochloropsis oceanica|type=CDS|length=996bp|location=Sequence derived from alignment at chr28:455930..458360+ (Nannochloropsis oceanica)
ATGCCGATAGTGCCGTCCTCCTCTTCCTCGTCCTCGTCCTCCTTCTCCTC
GTCCTCCACGCTTAGCCGGCCTTCCCCAGTCAATGCCAGCAGCAACGGCA
GCAGCAGCAGCAGCAGCAGCACTAATAGCAACCTCGACGCCGCCTTCTCA
TCCTTAGGCATAAAGGCCCCCCCTTCTGACGTGCTCCAGCGGGCAGTGGC
CCTGTTGCGGGACAAAGGCAACGAAGCCTTCCGCCGCAAAAGGTTTTTGG
AAGCTATCGATTTCTATGGGCAAGCCCTCGCGGGAGCACCGGACGACAAG
ACGCTCTATGCCAATCGCTGCCTGGCCCGGCTCAAGAAGGAGGAAGGAAA
GGAGGGCGTGAAGGAGGGCGGGAGCGGGGGAAAAGAAAATTCGAAGGAAG
GAGGGACGGAGGAGCTATTGTTGGCACTGGCCGATGCAGAGAGGGCATTG
CAGCTGGATCCTAGCTGGCTGAAAGGATGTCACCGCAAGGCTGTCTGTCT
CTACAGACTCGGAAAGTGGAAGGACGCCAAGCCGTACCTTGTCAGGCTGC
TCTCGGACCTGCCTGACGACAGGGAGTGTCAAGCCATGCTTAAAACCGTC
CTCGAGAAGCTCACACCCACCACCACCGGCAGCAGCAACAACAAAAGCGG
CAGAAGTGGCGGGTCCCAGATCCAGAAGGGAGAGGGGGAGGACGGGAAGG
AGGAAGGGGGGGAGGAAGAGACGACCGTTGTCTTGTCCCGGAAAGTGTTT
TATCCCTCGCAGGAGTGGTATACGCGGAATCTGATTGCTCCCGTGCTGGT
GAGTCAGCTGAAGGCTTACTCGGAGATGGACGCCCCCCGGCGACTGATCG
AGACCCTTTCCGATTCCCTCCTGATAAAAAAATGGCGTACCTTCCTCTCC
TCCTTCCCTTCCTCCTCCTCTCCCCCTTCCTCCTCCCCCTCCTCCCCTGT
CCTTCCTCGGGAGGAGGAGACGGAGCCGTTGAAGAGGTCAGGGTAA
back to top
Synonyms
Publications