NO28G01440, NO28G01440 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of NO28G01440 vs. NCBI_GenBank
Match: EWM20133.1 (hypothetical protein Naga_101655g1, partial [Nannochloropsis gaditana]) HSP 1 Score: 109.0 bits (271), Expect = 2.400e-20 Identity = 70/89 (78.65%), Postives = 80/89 (89.89%), Query Frame = 0 Query: 114 LLLPIVKIELALTNLGPLLQXXXXXXXXXXXXXXXXDWATAKNILSSPPFTKGEFKRIFNQYADTIYRTDTTDVMGGQSAPPAPLQSIQ 203 LLLPI+KI+ AL NL PLL XXXXXXXXXXXXXXXX W A++ILSSPPFT+ +FKRIFNQYADTIYR ++TD+MGGQ+APPAPLQSIQ Sbjct: 103 LLLPILKIDQALENLEPLLXXXXXXXXXXXXXXXXXXWTAARDILSSPPFTRKDFKRIFNQYADTIYRAESTDLMGGQNAPPAPLQSIQ 191
BLAST of NO28G01440 vs. NCBI_GenBank
Match: XP_002293895.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED88904.1 predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 87.4 bits (215), Expect = 7.400e-14 Identity = 56/162 (34.57%), Postives = 82/162 (50.62%), Query Frame = 0 Query: 114 LLLPIVKIELALTNLGPLLQXXXXXXXXXXXXXXXXDWATAKNILSSPPFTKGEFKRIFNQYADTIYRT--DTTDVMGGQSAPPAPLQSIQYLYRNEILTACEELRDELSYLLSEQGKGPEGDWH-DLSGLEEAYGKALENMQKYLSLAPPDDVESVRKAVK 273 LL PI+ +E ++ + LL + A I+ P F K FK+ FN +AD IY + D ++ G A P P QS+ YL RN++LT E+LR EL+YL+ E +G G+ +L L A + M KYL L PP ++E+ R + K Sbjct: 103 LLQPILTVEQSIATIDGLLDKTKLNNKDDYVTA----FKKADAIIEQPIFDKINFKKAFNAFADNIYYSDPDRANLYLGGGAIPKPTQSLAYLLRNDVLTNVEDLRAELTYLMKELNRGGAGEGGVELDDLYSIVKMAKDGMVKYLDLVPPKELEAARASFK 260
BLAST of NO28G01440 vs. NCBI_GenBank
Match: XP_002185660.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >ACI65130.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 79.3 bits (194), Expect = 2.000e-11 Identity = 46/124 (37.10%), Postives = 67/124 (54.03%), Query Frame = 0 Query: 151 WATAKNILSSPPFTKGEFKRIFNQYADTIYRT--DTTDVMGGQSAPPAPLQSIQYLYRNEILTACEELRDELSYLLSEQGKGPEGDWHDLSGLEEAYGKALENMQKYLSLAPPDDVESVRKAVK 273 WA A+NIL + K EFK+ FN Y+D IY + D ++ G A P QS+ YL RN+ILT E L+ E+ YLL E + E DL +A M++Y+ + PP ++ R+ +K Sbjct: 149 WAQAQNILKQKKYQKIEFKKQFNAYSDNIYYSDPDRANLYLGGGATPKTEQSLAYLLRNDILTNVEALQSEIEYLLKEPSESSE----DLVLYATTANRA---MKRYMGIVPPGELVKARELIK 265
BLAST of NO28G01440 vs. NCBI_GenBank
Match: OEU17569.1 (hypothetical protein FRACYDRAFT_184259 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 78.2 bits (191), Expect = 4.500e-11 Identity = 53/160 (33.12%), Postives = 78/160 (48.75%), Query Frame = 0 Query: 114 LLLPIVKIELALTNLGPLLQXXXXXXXXXXXXXXXXDWATAKNILSSPPFTKGEFKRIFNQYADTIYRT--DTTDVMGGQSAPPAPLQSIQYLYRNEILTACEELRDELSYLLSEQGKGPEGDWHDLSGLEEAYGKALENMQKYLSLAPPDDVESVRKAV 272 LL+PI+KI+ L + L+ + A IL SP + K FK+ FN+Y D IY + D + G A P QSI YL RN+ILT E LR EL +L+ K PE + + L M+KYL++ PP++++ + A+ Sbjct: 68 LLVPILKIDQELNEINTLVHSGDNNNNSNKPSKDA--MSKALTILQSPTYDKITFKKTFNKYGDNIYYSDPDRANAYLGGGATPKNEQSIAYLLRNDILTNMENLRAELEFLI----KTPEEENESVEDLYTYTAIVTSAMKKYLAIVPPNELKEAQAAL 221
BLAST of NO28G01440 vs. NCBI_GenBank
Match: GAX27848.1 (hypothetical protein FisN_13Hh045 [Fistulifera solaris]) HSP 1 Score: 75.9 bits (185), Expect = 2.200e-10 Identity = 43/122 (35.25%), Postives = 71/122 (58.20%), Query Frame = 0 Query: 155 KNILSSPPFTKGEFKRIFNQYADTIYRT--DTTDVMGGQSAPPAPLQSIQYLYRNEILTACEELRDELSYLLSEQGKGPEGDWHDLSGLEEAYGKALENMQKYLSLAPPDDVESVRKAVKQQ 275 ++I+ + K EFK+IFN Y D IY + D ++ G A P Q++ YL RNEILT E+L+ E+++LL + + PE D L + A + M++YL + PP +++ R+ +K+Q Sbjct: 137 QSIIRQKRYEKIEFKKIFNAYGDNIYYSDPDRANMYLGGGATPKNEQTLAYLQRNEILTNVEDLQAEVAFLLKNREESPE----DAINLAK---NACQAMRRYLEVVPPSELQEARELLKRQ 251
BLAST of NO28G01440 vs. NCBI_GenBank
Match: EJK73154.1 (hypothetical protein THAOC_05239 [Thalassiosira oceanica]) HSP 1 Score: 74.3 bits (181), Expect = 6.500e-10 Identity = 55/168 (32.74%), Postives = 81/168 (48.21%), Query Frame = 0 Query: 114 LLLPIVKIELALTNLGPLLQXXXXXXXXXXXXXXXXDWATAKNILSSPPFTKGEFKRIFNQYADTIYRT--DTTDVMGGQSAPPAPLQSIQYLYRNEILTACEELRDELSYLLSEQG------KGPEGDWHDLSGLEEAYGKALENMQKYLSLAPPDDVESVRKAVKQ 274 LL P+++IE L + L++ D I+S F K FK+ FN Y+D IY + D ++ G A P P QS+ YL RN+IL E++R E+ YL E G K GD + + G A E M KY+ L PPD++++ RK + + Sbjct: 132 LLEPVLEIEGDLMRIEVLVRGDLSTKEDYLRMLDSVD-----EIISKSIFDKIAFKKTFNAYSDNIYYSDPDRANLYLGGGATPRPTQSLAYLMRNDILGNVEDVRAEVPYLKKEIGSLNAGEKVILGDGGIETDMVSLVGGANEAMVKYIKLVPPDELKAARKQMAE 294
BLAST of NO28G01440 vs. NCBI_GenBank
Match: GAX12588.1 (hypothetical protein FisN_13Lh045 [Fistulifera solaris]) HSP 1 Score: 73.9 bits (180), Expect = 8.500e-10 Identity = 43/122 (35.25%), Postives = 69/122 (56.56%), Query Frame = 0 Query: 155 KNILSSPPFTKGEFKRIFNQYADTIYRT--DTTDVMGGQSAPPAPLQSIQYLYRNEILTACEELRDELSYLLSEQGKGPEGDWHDLSGLEEAYGKALENMQKYLSLAPPDDVESVRKAVKQQ 275 ++I+ + K EFK+IFN Y D IY + D ++ G A P Q++ YL RNEILT E+L+ E+++LL + + PE D L + A + M+ YL + PP +++ R+ +K Q Sbjct: 96 QSIIRQKRYEKIEFKKIFNAYGDNIYYSDPDRANMYLGGGATPKNEQTLAYLQRNEILTNVEDLQAEIAFLLKNREESPE----DAVNLAK---NACQAMRLYLEVVPPSELKEARELLKHQ 210
BLAST of NO28G01440 vs. NCBI_GenBank
Match: XP_009038859.1 (hypothetical protein AURANDRAFT_65644 [Aureococcus anophagefferens] >EGB06278.1 hypothetical protein AURANDRAFT_65644 [Aureococcus anophagefferens]) HSP 1 Score: 69.3 bits (168), Expect = 2.100e-8 Identity = 48/142 (33.80%), Postives = 69/142 (48.59%), Query Frame = 0 Query: 115 LLPIVKIELALTNLGPLLQXXXXXXXXXXXXXXXXDWATAKNILSSPPFTKGEFKRIFNQYADTIY--RTD----TTDVMGGQSAPPAPLQSIQYLYRNEILTACEELRDELSYLLSEQGKGPEGDWHDLSGLEEAYGKALE 251 L +V+++ +L L PLL W A+ LS P F K FKR FN Y+D +Y R+D ++GG PP+ Q+IQYL+RN+ L E+L+ E+ YLL+ K + D D A KA + Sbjct: 124 LAKVVRLDDSLRGLAPLLD-------------SRDGWTKARKTLSDPAFEKKNFKRAFNAYSDNVYYERSDPDRANLYLLGG--TPPSNKQTIQYLHRNDALDNVEKLQSEIDYLLT--NKDGDSDPSDAKAFYAAATKAFD 248 The following BLAST results are available for this feature:
BLAST of NO28G01440 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 8
Relationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO28G01440 ID=NO28G01440|Name=NO28G01440|organism=Nannochloropsis oceanica|type=gene|length=1303bpback to top protein sequence of NO28G01440.2 >NO28G01440.2-protein ID=NO28G01440.2-protein|Name=NO28G01440.2|organism=Nannochloropsis oceanica|type=polypeptide|length=276bpback to top protein sequence of NO28G01440.1 >NO28G01440.1-protein ID=NO28G01440.1-protein|Name=NO28G01440.1|organism=Nannochloropsis oceanica|type=polypeptide|length=277bpback to top Synonyms
Publications
|