NO28G01440, NO28G01440 (gene) Nannochloropsis oceanica

Overview
NameNO28G01440
Unique NameNO28G01440
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1303
Alignment locationchr28:454227..455529 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:454227..455529 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO28G01440 vs. NCBI_GenBank
Match: EWM20133.1 (hypothetical protein Naga_101655g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 109.0 bits (271), Expect = 2.400e-20
Identity = 70/89 (78.65%), Postives = 80/89 (89.89%), Query Frame = 0
Query:  114 LLLPIVKIELALTNLGPLLQXXXXXXXXXXXXXXXXDWATAKNILSSPPFTKGEFKRIFNQYADTIYRTDTTDVMGGQSAPPAPLQSIQ 203
            LLLPI+KI+ AL NL PLL XXXXXXXXXXXXXXXX W  A++ILSSPPFT+ +FKRIFNQYADTIYR ++TD+MGGQ+APPAPLQSIQ
Sbjct:  103 LLLPILKIDQALENLEPLLXXXXXXXXXXXXXXXXXXWTAARDILSSPPFTRKDFKRIFNQYADTIYRAESTDLMGGQNAPPAPLQSIQ 191          
BLAST of NO28G01440 vs. NCBI_GenBank
Match: XP_002293895.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED88904.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 87.4 bits (215), Expect = 7.400e-14
Identity = 56/162 (34.57%), Postives = 82/162 (50.62%), Query Frame = 0
Query:  114 LLLPIVKIELALTNLGPLLQXXXXXXXXXXXXXXXXDWATAKNILSSPPFTKGEFKRIFNQYADTIYRT--DTTDVMGGQSAPPAPLQSIQYLYRNEILTACEELRDELSYLLSEQGKGPEGDWH-DLSGLEEAYGKALENMQKYLSLAPPDDVESVRKAVK 273
            LL PI+ +E ++  +  LL                  +  A  I+  P F K  FK+ FN +AD IY +  D  ++  G  A P P QS+ YL RN++LT  E+LR EL+YL+ E  +G  G+   +L  L      A + M KYL L PP ++E+ R + K
Sbjct:  103 LLQPILTVEQSIATIDGLLDKTKLNNKDDYVTA----FKKADAIIEQPIFDKINFKKAFNAFADNIYYSDPDRANLYLGGGAIPKPTQSLAYLLRNDVLTNVEDLRAELTYLMKELNRGGAGEGGVELDDLYSIVKMAKDGMVKYLDLVPPKELEAARASFK 260          
BLAST of NO28G01440 vs. NCBI_GenBank
Match: XP_002185660.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >ACI65130.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 79.3 bits (194), Expect = 2.000e-11
Identity = 46/124 (37.10%), Postives = 67/124 (54.03%), Query Frame = 0
Query:  151 WATAKNILSSPPFTKGEFKRIFNQYADTIYRT--DTTDVMGGQSAPPAPLQSIQYLYRNEILTACEELRDELSYLLSEQGKGPEGDWHDLSGLEEAYGKALENMQKYLSLAPPDDVESVRKAVK 273
            WA A+NIL    + K EFK+ FN Y+D IY +  D  ++  G  A P   QS+ YL RN+ILT  E L+ E+ YLL E  +  E    DL        +A   M++Y+ + PP ++   R+ +K
Sbjct:  149 WAQAQNILKQKKYQKIEFKKQFNAYSDNIYYSDPDRANLYLGGGATPKTEQSLAYLLRNDILTNVEALQSEIEYLLKEPSESSE----DLVLYATTANRA---MKRYMGIVPPGELVKARELIK 265          
BLAST of NO28G01440 vs. NCBI_GenBank
Match: OEU17569.1 (hypothetical protein FRACYDRAFT_184259 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 78.2 bits (191), Expect = 4.500e-11
Identity = 53/160 (33.12%), Postives = 78/160 (48.75%), Query Frame = 0
Query:  114 LLLPIVKIELALTNLGPLLQXXXXXXXXXXXXXXXXDWATAKNILSSPPFTKGEFKRIFNQYADTIYRT--DTTDVMGGQSAPPAPLQSIQYLYRNEILTACEELRDELSYLLSEQGKGPEGDWHDLSGLEEAYGKALENMQKYLSLAPPDDVESVRKAV 272
            LL+PI+KI+  L  +  L+                   + A  IL SP + K  FK+ FN+Y D IY +  D  +   G  A P   QSI YL RN+ILT  E LR EL +L+    K PE +   +  L          M+KYL++ PP++++  + A+
Sbjct:   68 LLVPILKIDQELNEINTLVHSGDNNNNSNKPSKDA--MSKALTILQSPTYDKITFKKTFNKYGDNIYYSDPDRANAYLGGGATPKNEQSIAYLLRNDILTNMENLRAELEFLI----KTPEEENESVEDLYTYTAIVTSAMKKYLAIVPPNELKEAQAAL 221          
BLAST of NO28G01440 vs. NCBI_GenBank
Match: GAX27848.1 (hypothetical protein FisN_13Hh045 [Fistulifera solaris])

HSP 1 Score: 75.9 bits (185), Expect = 2.200e-10
Identity = 43/122 (35.25%), Postives = 71/122 (58.20%), Query Frame = 0
Query:  155 KNILSSPPFTKGEFKRIFNQYADTIYRT--DTTDVMGGQSAPPAPLQSIQYLYRNEILTACEELRDELSYLLSEQGKGPEGDWHDLSGLEEAYGKALENMQKYLSLAPPDDVESVRKAVKQQ 275
            ++I+    + K EFK+IFN Y D IY +  D  ++  G  A P   Q++ YL RNEILT  E+L+ E+++LL  + + PE    D   L +    A + M++YL + PP +++  R+ +K+Q
Sbjct:  137 QSIIRQKRYEKIEFKKIFNAYGDNIYYSDPDRANMYLGGGATPKNEQTLAYLQRNEILTNVEDLQAEVAFLLKNREESPE----DAINLAK---NACQAMRRYLEVVPPSELQEARELLKRQ 251          
BLAST of NO28G01440 vs. NCBI_GenBank
Match: EJK73154.1 (hypothetical protein THAOC_05239 [Thalassiosira oceanica])

HSP 1 Score: 74.3 bits (181), Expect = 6.500e-10
Identity = 55/168 (32.74%), Postives = 81/168 (48.21%), Query Frame = 0
Query:  114 LLLPIVKIELALTNLGPLLQXXXXXXXXXXXXXXXXDWATAKNILSSPPFTKGEFKRIFNQYADTIYRT--DTTDVMGGQSAPPAPLQSIQYLYRNEILTACEELRDELSYLLSEQG------KGPEGDWHDLSGLEEAYGKALENMQKYLSLAPPDDVESVRKAVKQ 274
            LL P+++IE  L  +  L++                D      I+S   F K  FK+ FN Y+D IY +  D  ++  G  A P P QS+ YL RN+IL   E++R E+ YL  E G      K   GD    + +    G A E M KY+ L PPD++++ RK + +
Sbjct:  132 LLEPVLEIEGDLMRIEVLVRGDLSTKEDYLRMLDSVD-----EIISKSIFDKIAFKKTFNAYSDNIYYSDPDRANLYLGGGATPRPTQSLAYLMRNDILGNVEDVRAEVPYLKKEIGSLNAGEKVILGDGGIETDMVSLVGGANEAMVKYIKLVPPDELKAARKQMAE 294          
BLAST of NO28G01440 vs. NCBI_GenBank
Match: GAX12588.1 (hypothetical protein FisN_13Lh045 [Fistulifera solaris])

HSP 1 Score: 73.9 bits (180), Expect = 8.500e-10
Identity = 43/122 (35.25%), Postives = 69/122 (56.56%), Query Frame = 0
Query:  155 KNILSSPPFTKGEFKRIFNQYADTIYRT--DTTDVMGGQSAPPAPLQSIQYLYRNEILTACEELRDELSYLLSEQGKGPEGDWHDLSGLEEAYGKALENMQKYLSLAPPDDVESVRKAVKQQ 275
            ++I+    + K EFK+IFN Y D IY +  D  ++  G  A P   Q++ YL RNEILT  E+L+ E+++LL  + + PE    D   L +    A + M+ YL + PP +++  R+ +K Q
Sbjct:   96 QSIIRQKRYEKIEFKKIFNAYGDNIYYSDPDRANMYLGGGATPKNEQTLAYLQRNEILTNVEDLQAEIAFLLKNREESPE----DAVNLAK---NACQAMRLYLEVVPPSELKEARELLKHQ 210          
BLAST of NO28G01440 vs. NCBI_GenBank
Match: XP_009038859.1 (hypothetical protein AURANDRAFT_65644 [Aureococcus anophagefferens] >EGB06278.1 hypothetical protein AURANDRAFT_65644 [Aureococcus anophagefferens])

HSP 1 Score: 69.3 bits (168), Expect = 2.100e-8
Identity = 48/142 (33.80%), Postives = 69/142 (48.59%), Query Frame = 0
Query:  115 LLPIVKIELALTNLGPLLQXXXXXXXXXXXXXXXXDWATAKNILSSPPFTKGEFKRIFNQYADTIY--RTD----TTDVMGGQSAPPAPLQSIQYLYRNEILTACEELRDELSYLLSEQGKGPEGDWHDLSGLEEAYGKALE 251
            L  +V+++ +L  L PLL                  W  A+  LS P F K  FKR FN Y+D +Y  R+D       ++GG   PP+  Q+IQYL+RN+ L   E+L+ E+ YLL+   K  + D  D      A  KA +
Sbjct:  124 LAKVVRLDDSLRGLAPLLD-------------SRDGWTKARKTLSDPAFEKKNFKRAFNAYSDNVYYERSDPDRANLYLLGG--TPPSNKQTIQYLHRNDALDNVEKLQSEIDYLLT--NKDGDSDPSDAKAFYAAATKAFD 248          
The following BLAST results are available for this feature:
BLAST of NO28G01440 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 8
Match NameE-valueIdentityDescription
EWM20133.12.400e-2078.65hypothetical protein Naga_101655g1, partial [Nanno... [more]
XP_002293895.17.400e-1434.57predicted protein [Thalassiosira pseudonana CCMP13... [more]
XP_002185660.12.000e-1137.10predicted protein [Phaeodactylum tricornutum CCAP ... [more]
OEU17569.14.500e-1133.13hypothetical protein FRACYDRAFT_184259 [Fragilario... [more]
GAX27848.12.200e-1035.25hypothetical protein FisN_13Hh045 [Fistulifera sol... [more]
EJK73154.16.500e-1032.74hypothetical protein THAOC_05239 [Thalassiosira oc... [more]
GAX12588.18.500e-1035.25hypothetical protein FisN_13Lh045 [Fistulifera sol... [more]
XP_009038859.12.100e-833.80hypothetical protein AURANDRAFT_65644 [Aureococcus... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR065ncniR065Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO28G01440.2NO28G01440.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO28G01440.1NO28G01440.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609450gene_9876Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO28G01440.2NO28G01440.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO28G01440.1NO28G01440.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO28G01440 ID=NO28G01440|Name=NO28G01440|organism=Nannochloropsis oceanica|type=gene|length=1303bp
AACCACAGACAGCTGCAGCAGCAGCGGCAGCAGGAGCAGCCTCAGCAGCA
ACTCCAGCACCTCAAGCCATGCGTCACCGCCATGTATCCGCATTTGCGCC
CTTGTCATACCCTCCTACCCCACCGCCACCATCGTCGCACTCCCCACGCT
CAAGCCCTTGGCCCAGCACCGCCACGGCTACCTCCGCAGCTGCCTACTTC
CTCCTCCTCTTTTCCCCGTTAAGCTCTCTCCTCCTTCCCTTATCCGCCGC
CTCTGCTTCGACCCTCTCAACCCGCACAAGCATTCTCTTTCTTGGCAGCA
GCAGCACCACTACCATCACCACCGCCATCACCACCACCACCACCTCCACG
AACCTTATCGCCGCAGGAGCAGCTGACAAAAGCATCAGCGTCACCCCTCC
TTCGATCCTTCTCCTTCCCATCGTTAAAATCGAGTTGGCCCTCACAAATC
TCGGCCCTCTTCTCCAACCCCCTTCCTCTTCCTCCTCCTCCTCCCCCTCT
TCTTCCTCCCCCAGCGATTGGGCTACTGCCAAGAATATTCTCTCCTCCCC
TCCCTTTACGAAAGGAGAGTTCAAACGAATCTTCAATCAGTACGCAGACA
CCATTTATCGGACTGATACCACGGACGTGATGGGAGGTCAGAGCGCGCCA
CCTGCCCCGCTACAAAGCATTCAGgtcggtatgggcctttcctccctccc
tccctcacttaaggtcctcacttttcgactcgagacactcgctgggaaag
aaggggaaaacaagagaagggaggaaggagggtcaaagagggagggaggg
agggagggagggcttgaggagacggtggactctgctcacacgtgtttccc
ccacctcatagTATCTATACAGGAACGAGATTTTGACGGCTTGTGAGGAG
CTACGCGATGAATTGAGgtgaatgttctcactaagcccctcccgcctatt
gtctccttagccccccttccccctcttccgtccctccattgctcactccc
gttgtatactgactaggcatggttggtttagtcctctcttccccacccac
tcctaccccccgttctccccctctccctcctccattgatatagCTACCTG
CTCTCGGAGCAAGGCAAGGGTCCTGAGGGCGACTGGCACGACCTGAGTGG
ATTAGAGGAGGCCTATGGAAAGGCCTTGGAGAACATGCAGAAGTATTTGT
CACTTGCACCGCCAGACGACGTCGAGAGCGTCCGGAAAGCCGTGAAGCAA
CAATTACAATAACAACATAACGACGAAAGAAATAATTATAATTGATATGA
ATG
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protein sequence of NO28G01440.2

>NO28G01440.2-protein ID=NO28G01440.2-protein|Name=NO28G01440.2|organism=Nannochloropsis oceanica|type=polypeptide|length=276bp
MRHRHVSAFAPLSYPPTPPPPSSHSPRSSPWPSTATATSAAAYFLLLFSP
LSSLLLPLSAASASTLSTRTSILFLGSSSTTTITTAITTTTTSTNLIAAG
AADKSISVTPPSILLLPIVKIELALTNLGPLLQPPSSSSSSSPSSSSPSD
WATAKNILSSPPFTKGEFKRIFNQYADTIYRTDTTDVMGGQSAPPAPLQS
IQVGMGLSSLPPSLKVLTFRLETLAGKEGENKRREEGGSKREGGREGGLE
ETVDSAHTCFPHLIVSIQERDFDGL*
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protein sequence of NO28G01440.1

>NO28G01440.1-protein ID=NO28G01440.1-protein|Name=NO28G01440.1|organism=Nannochloropsis oceanica|type=polypeptide|length=277bp
MRHRHVSAFAPLSYPPTPPPPSSHSPRSSPWPSTATATSAAAYFLLLFSP
LSSLLLPLSAASASTLSTRTSILFLGSSSTTTITTAITTTTTSTNLIAAG
AADKSISVTPPSILLLPIVKIELALTNLGPLLQPPSSSSSSSPSSSSPSD
WATAKNILSSPPFTKGEFKRIFNQYADTIYRTDTTDVMGGQSAPPAPLQS
IQYLYRNEILTACEELRDELSYLLSEQGKGPEGDWHDLSGLEEAYGKALE
NMQKYLSLAPPDDVESVRKAVKQQLQ*
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Synonyms
Publications