NO28G01440.2, NO28G01440.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO28G01440.2
Unique NameNO28G01440.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1127
Alignment locationchr28:454227..455529 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:454227..455529 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO28G01440.2 vs.
Match: EWM20133.1 (hypothetical protein Naga_101655g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 118.6 bits (296), Expect = 3.000e-23
Identity = 89/196 (45.41%), Postives = 111/196 (56.63%), Query Frame = 0 
Query:    8 AFAPLSYPPTPPPPSSHSPRSSPWPSTATATSAAAYFLLLFSPLSSLLLPLSAASASTLSTRTSILFLGSSSTTTITTAITTTTTSTNLIAAGAADKSISVTPPSILLLPIVKIELALTNLGPLLQPPSSSSSSSPSSSSPSDWATAKNILSSPPFTKGEFKRIFNQYADTIYRTDTTDVMGGQSAPPAPLQSIQV 204
            AFA    P  PP   + SP SS  P          +       L  LL P S   + + +    +  LGS+S                L+++G     + VTPPS+LLLPI+KI+ AL NL PLL PP S   S P S   S W  A++ILSSPPFT+ +FKRIFNQYADTIYR ++TD+MGGQ+APPAPLQSIQV
Sbjct:   17 AFALPGLPMAPPCSGNPSPSSSTAPVLLPVPPPRPHSTTFLPALLLLLCPPSLLPSPSYAFAPPLPSLGSTSA---------------LLSSG-----VDVTPPSVLLLPILKIDQALENLEPLLHPPPSLPPSLPPSLPSSSWTAARDILSSPPFTRKDFKRIFNQYADTIYRAESTDLMGGQNAPPAPLQSIQV 192
The following BLAST results are available for this feature:
BLAST of NO28G01440.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20133.13.000e-2345.41hypothetical protein Naga_101655g1, partial [Nanno... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO28G01440NO28G01440Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO28G01440.2NO28G01440.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO28G01440.2.cds1NO28G01440.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO28G01440.2 ID=NO28G01440.2|Name=NO28G01440.2|organism=Nannochloropsis oceanica|type=mRNA|length=1127bp
AACCACAGACAGCTGCAGCAGCAGCGGCAGCAGGAGCAGCCTCAGCAGCA
ACTCCAGCACCTCAAGCCATGCGTCACCGCCATGTATCCGCATTTGCGCC
CTTGTCATACCCTCCTACCCCACCGCCACCATCGTCGCACTCCCCACGCT
CAAGCCCTTGGCCCAGCACCGCCACGGCTACCTCCGCAGCTGCCTACTTC
CTCCTCCTCTTTTCCCCGTTAAGCTCTCTCCTCCTTCCCTTATCCGCCGC
CTCTGCTTCGACCCTCTCAACCCGCACAAGCATTCTCTTTCTTGGCAGCA
GCAGCACCACTACCATCACCACCGCCATCACCACCACCACCACCTCCACG
AACCTTATCGCCGCAGGAGCAGCTGACAAAAGCATCAGCGTCACCCCTCC
TTCGATCCTTCTCCTTCCCATCGTTAAAATCGAGTTGGCCCTCACAAATC
TCGGCCCTCTTCTCCAACCCCCTTCCTCTTCCTCCTCCTCCTCCCCCTCT
TCTTCCTCCCCCAGCGATTGGGCTACTGCCAAGAATATTCTCTCCTCCCC
TCCCTTTACGAAAGGAGAGTTCAAACGAATCTTCAATCAGTACGCAGACA
CCATTTATCGGACTGATACCACGGACGTGATGGGAGGTCAGAGCGCGCCA
CCTGCCCCGCTACAAAGCATTCAGGTCGGTATGGGCCTTTCCTCCCTCCC
TCCCTCACTTAAGGTCCTCACTTTTCGACTCGAGACACTCGCTGGGAAAG
AAGGGGAAAACAAGAGAAGGGAGGAAGGAGGGTCAAAGAGGGAGGGAGGG
AGGGAGGGAGGGCTTGAGGAGACGGTGGACTCTGCTCACACGTGTTTCCC
CCACCTCATAGTATCTATACAGGAACGAGATTTTGACGGCTTGTGAGGAG
CTACGCGATGAATTGAGCTACCTGCTCTCGGAGCAAGGCAAGGGTCCTGA
GGGCGACTGGCACGACCTGAGTGGATTAGAGGAGGCCTATGGAAAGGCCT
TGGAGAACATGCAGAAGTATTTGTCACTTGCACCGCCAGACGACGTCGAG
AGCGTCCGGAAAGCCGTGAAGCAACAATTACAATAACAACATAACGACGA
AAGAAATAATTATAATTGATATGAATG
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protein sequence of NO28G01440.2

>NO28G01440.2-protein ID=NO28G01440.2-protein|Name=NO28G01440.2|organism=Nannochloropsis oceanica|type=polypeptide|length=276bp
MRHRHVSAFAPLSYPPTPPPPSSHSPRSSPWPSTATATSAAAYFLLLFSP
LSSLLLPLSAASASTLSTRTSILFLGSSSTTTITTAITTTTTSTNLIAAG
AADKSISVTPPSILLLPIVKIELALTNLGPLLQPPSSSSSSSPSSSSPSD
WATAKNILSSPPFTKGEFKRIFNQYADTIYRTDTTDVMGGQSAPPAPLQS
IQVGMGLSSLPPSLKVLTFRLETLAGKEGENKRREEGGSKREGGREGGLE
ETVDSAHTCFPHLIVSIQERDFDGL*
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mRNA from alignment at chr28:454227..455529-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO28G01440.2 ID=NO28G01440.2|Name=NO28G01440.2|organism=Nannochloropsis oceanica|type=mRNA|length=1303bp|location=Sequence derived from alignment at chr28:454227..455529- (Nannochloropsis oceanica)
AACCACAGACAGCTGCAGCAGCAGCGGCAGCAGGAGCAGCCTCAGCAGCA
ACTCCAGCACCTCAAGCCATGCGTCACCGCCATGTATCCGCATTTGCGCC
CTTGTCATACCCTCCTACCCCACCGCCACCATCGTCGCACTCCCCACGCT
CAAGCCCTTGGCCCAGCACCGCCACGGCTACCTCCGCAGCTGCCTACTTC
CTCCTCCTCTTTTCCCCGTTAAGCTCTCTCCTCCTTCCCTTATCCGCCGC
CTCTGCTTCGACCCTCTCAACCCGCACAAGCATTCTCTTTCTTGGCAGCA
GCAGCACCACTACCATCACCACCGCCATCACCACCACCACCACCTCCACG
AACCTTATCGCCGCAGGAGCAGCTGACAAAAGCATCAGCGTCACCCCTCC
TTCGATCCTTCTCCTTCCCATCGTTAAAATCGAGTTGGCCCTCACAAATC
TCGGCCCTCTTCTCCAACCCCCTTCCTCTTCCTCCTCCTCCTCCCCCTCT
TCTTCCTCCCCCAGCGATTGGGCTACTGCCAAGAATATTCTCTCCTCCCC
TCCCTTTACGAAAGGAGAGTTCAAACGAATCTTCAATCAGTACGCAGACA
CCATTTATCGGACTGATACCACGGACGTGATGGGAGGTCAGAGCGCGCCA
CCTGCCCCGCTACAAAGCATTCAGGTCGGTATGGGCCTTTCCTCCCTCCC
TCCCTCACTTAAGGTCCTCACTTTTCGACTCGAGACACTCGCTGGGAAAG
AAGGGGAAAACAAGAGAAGGGAGGAAGGAGGGTCAAAGAGGGAGGGAGGG
AGGGAGGGAGGGCTTGAGGAGACGGTGGACTCTGCTCACACGTGTTTCCC
CCACCTCATAGTATCTATACAGGAACGAGATTTTGACGGCTTGTGAGGAG
CTACGCGATGAATTGAGGTGAATGTTCTCACTAAGCCCCTCCCGCCTATT
GTCTCCTTAGCCCCCCTTCCCCCTCTTCCGTCCCTCCATTGCTCACTCCC
GTTGTATACTGACTAGGCATGGTTGGTTTAGTCCTCTCTTCCCCACCCAC
TCCTACCCCCCGTTCTCCCCCTCTCCCTCCTCCATTGATATAGCTACCTG
CTCTCGGAGCAAGGCAAGGGTCCTGAGGGCGACTGGCACGACCTGAGTGG
ATTAGAGGAGGCCTATGGAAAGGCCTTGGAGAACATGCAGAAGTATTTGT
CACTTGCACCGCCAGACGACGTCGAGAGCGTCCGGAAAGCCGTGAAGCAA
CAATTACAATAACAACATAACGACGAAAGAAATAATTATAATTGATATGA
ATG
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Coding sequence (CDS) from alignment at chr28:454227..455529-

>NO28G01440.2 ID=NO28G01440.2|Name=NO28G01440.2|organism=Nannochloropsis oceanica|type=CDS|length=828bp|location=Sequence derived from alignment at chr28:454227..455529- (Nannochloropsis oceanica)
ATGCGTCACCGCCATGTATCCGCATTTGCGCCCTTGTCATACCCTCCTAC
CCCACCGCCACCATCGTCGCACTCCCCACGCTCAAGCCCTTGGCCCAGCA
CCGCCACGGCTACCTCCGCAGCTGCCTACTTCCTCCTCCTCTTTTCCCCG
TTAAGCTCTCTCCTCCTTCCCTTATCCGCCGCCTCTGCTTCGACCCTCTC
AACCCGCACAAGCATTCTCTTTCTTGGCAGCAGCAGCACCACTACCATCA
CCACCGCCATCACCACCACCACCACCTCCACGAACCTTATCGCCGCAGGA
GCAGCTGACAAAAGCATCAGCGTCACCCCTCCTTCGATCCTTCTCCTTCC
CATCGTTAAAATCGAGTTGGCCCTCACAAATCTCGGCCCTCTTCTCCAAC
CCCCTTCCTCTTCCTCCTCCTCCTCCCCCTCTTCTTCCTCCCCCAGCGAT
TGGGCTACTGCCAAGAATATTCTCTCCTCCCCTCCCTTTACGAAAGGAGA
GTTCAAACGAATCTTCAATCAGTACGCAGACACCATTTATCGGACTGATA
CCACGGACGTGATGGGAGGTCAGAGCGCGCCACCTGCCCCGCTACAAAGC
ATTCAGGTCGGTATGGGCCTTTCCTCCCTCCCTCCCTCACTTAAGGTCCT
CACTTTTCGACTCGAGACACTCGCTGGGAAAGAAGGGGAAAACAAGAGAA
GGGAGGAAGGAGGGTCAAAGAGGGAGGGAGGGAGGGAGGGAGGGCTTGAG
GAGACGGTGGACTCTGCTCACACGTGTTTCCCCCACCTCATAGTATCTAT
ACAGGAACGAGATTTTGACGGCTTGTGA
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Synonyms
Publications