NO28G01420, NO28G01420 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO28G01420 vs. NCBI_GenBank
Match: XP_005784129.1 (procollagen-lysine, 2-oxoglutarate 5-dioxygenase [Emiliania huxleyi CCMP1516] >XP_005785964.1 hypothetical protein EMIHUDRAFT_467791 [Emiliania huxleyi CCMP1516] >EOD31700.1 procollagen-lysine, 2-oxoglutarate 5-dioxygenase [Emiliania huxleyi CCMP1516] >EOD33535.1 hypothetical protein EMIHUDRAFT_467791 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 251.9 bits (642), Expect = 2.700e-63 Identity = 132/246 (53.66%), Postives = 164/246 (66.67%), Query Frame = 0 Query: 79 VSERQIPQYLETMKLYYHNDSSKPVTPVTFNQQEDFVSYLGDEKLVAKPGEEPYKLVHVSKAPLFSPEECQAIIDECEERAAKV-GWATKRHFAYPTTDVPLKELPRTLEWF--NEKLQERIYPCLASNFAQALPDSSKLKVVDAFIVKYDADGGQTQLKPHRDGSVVSFNVALNPSSEFEGGGTYFKGLDDGLRIEQGHIVTHASNVLHGGHPITSGKRYILVSFVILEGFANWAMRFANLVWDY 322 VSER Y ET+KL+ +P+ P ++ S++ P + L+H + PL S EC AI+ E EE AA+ GW ++RHF +PT D+PL ELP T WF + L +RIYP L + F ++LP+ L+V DAFIVKYDA GGQT LKPHRDGSVVSFN+ALN E+EGGGT+F GL + L IE+GH+ HAS VLHGGHPITSG RYILV+FVILEG+ NWAMRF VWDY Sbjct: 35 VSERHNQAYKETIKLF------EPLAPDAPLRRVPLASHV--------PHPDGDCLIHTTTEPLLSAAECAAIVAESEEWAAREGGWTSRRHFNHPTIDIPLSELPAT-RWFLNTDALPKRIYPMLGAAFEESLPNWRALRVADAFIVKYDAAGGQTHLKPHRDGSVVSFNIALNERCEYEGGGTWFDGLGEALPIERGHVCCHASGVLHGGHPITSGVRYILVAFVILEGYQNWAMRFMKSVWDY 265
BLAST of NO28G01420 vs. NCBI_GenBank
Match: XP_002292265.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED90240.1 predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 247.7 bits (631), Expect = 5.000e-62 Identity = 132/286 (46.15%), Postives = 184/286 (64.34%), Query Frame = 0 Query: 43 FLLLPLFY---LSRNGSSINAFLLPSPSIDVK---VALMRRHVSERQIPQYLET---MKLYYHNDSSKPVTPVTFNQQEDFVSYLGDEKLVAKPGEEPYKLVHVSKAPLFSPEECQAIIDECEERAAKVGWATKRHFAYPTTDVPLKELPRTLEWFNEKLQERIYPCLASNFAQALPDSSK-LKVVDAFIVKYDADGGQTQLKPHRDGSVVSFNVALNPSSEFEGGGTYFKGLDDGLRIEQGHIVTHASNVLHGGHPITSGKRYILVSFVILEGFANWAMRFANLV 319 F++ LF+ L+ ++AF L PS + VSE +P Y + L Y + S + T Q+ + + LV P ++ + +VH + P+F+ EEC IIDE E++A ++GW RH YPTTD+P+ ELP+TL++F L ERIYP L F LPD K L+V D F+VKYDA+GGQ +LKPHRDGSV+SFN+ALNP+ EF+GGGT+F+ LD ++I+QG +V+H+S++LHGGH ITSGKRYI+V FVILEG+ +W+MRF N V Sbjct: 3 FMMTSLFHLVVLTWCALCVDAFTLSIPSYTTNNPPTSTTSLWVSEVHVPGYKHSKIPFILTYDDTSDGGMAVATRIQERTYTQDVDYTSLV--PFQDGH-MVHKTTGPVFTREECNMIIDEAEQKAYEMGWTQNRHGNYPTTDLPIVELPQTLDFFRVALVERIYPLLRQQFGMYLPDGGKSLRVADGFVVKYDAEGGQAELKPHRDGSVLSFNIALNPADEFDGGGTWFQSLDGAVKIDQGEVVSHSSSLLHGGHGITSGKRYIMVCFVILEGYDSWSMRFYNQV 285
BLAST of NO28G01420 vs. NCBI_GenBank
Match: KOO35005.1 (hypothetical protein Ctob_008422 [Chrysochromulina sp. CCMP291]) HSP 1 Score: 244.2 bits (622), Expect = 5.500e-61 Identity = 129/246 (52.44%), Postives = 159/246 (64.63%), Query Frame = 0 Query: 79 VSERQIPQYLETMKLYYHNDSSKPVTPVTFNQQEDFVSYLGDEKLVAKPGEEPYKLVHVSKAPLFSPEECQAIIDECEERAAKV-GWATKRHFAYPTTDVPLKELPRTLEWF--NEKLQERIYPCLASNFAQALPDSSKLKVVDAFIVKYDADGGQTQLKPHRDGSVVSFNVALNPSSEFEGGGTYFKGLDDGLRIEQGHIVTHASNVLHGGHPITSGKRYILVSFVILEGFANWAMRFANLVWDY 322 +SER Y ET+KL+ P+ + +S++ G + LVH + PL S +EC+ II E EE AA+ GW +KRHF +PTTD+PL ELP T WF ++ L RIYP L F +LP+ L+V DAFIVKY+A GGQT L HRDGSV+SFNVALN SE+EGGGT+F+GL L IE+GH+ HA VLHGGHPIT G RYILV+FVILEG+ NWAMRF VWDY Sbjct: 478 ISERHNQAYKETIKLFEPLPRDAPL------HRTPLISHV--------TGPDGVGLVHTTAEPLLSAQECEYIIGEAEEWAARAGGWTSKRHFNHPTTDIPLAELPLT-RWFLNSDALPNRIYPLLGHAFESSLPNWRALRVADAFIVKYNASGGQTFLSKHRDGSVLSFNVALNARSEYEGGGTWFEGLGRSLPIERGHVCAHAGGVLHGGHPITGGVRYILVAFVILEGYQNWAMRFMKSVWDY 708
BLAST of NO28G01420 vs. NCBI_GenBank
Match: GAX15195.1 (lysyl hydroxylase/galactosyltransferase/ glucosyltransferase [Fistulifera solaris]) HSP 1 Score: 233.8 bits (595), Expect = 7.500e-58 Identity = 121/243 (49.79%), Postives = 156/243 (64.20%), Query Frame = 0 Query: 76 RRHVSERQIPQYLETMKLYYHNDSSKPVTPVTFNQQEDFVSYLGDEKLVAKPGEEPYKLVHVSKAPLFSPEECQAIIDECEERAAKVGWATKRHFAYPTTDVPLKELPRTLEWFNEKLQERIYPCLASNFAQALPDSSKLKVVDAFIVKYDADGGQTQLKPHRDGSVVSFNVALNPSSEFEGGGTYFKGLDDGLRIEQGHIVTHASNVLHGGHPITSGKRYILVSFVILEGFANWAMRFANLV 319 RR VSE IP Y T KL + DS+ + P T+ D+ SY L+ G LVH + PLFS EC I+ E E A + W RH +PTTD+PL ELP+TL E ER+ P LA F LPD S+L++ D F+VKYDA Q +LKPHRDG+VVSFN+ALNPSS++ GGGT+F+ LD + + QGH+V+HAS +LHGG IT+G+RYILV+F I+EG+ W+MRF N V Sbjct: 37 RRFVSELHIPAY-RTSKLPFLPDSATHIQPRTYQAGRDYTSY-----LIQNHGG---GLVHQTNFPLFSDAECHTIVQEAEAVARQRDWTRTRHGNFPTTDLPLTELPQTLHLLKEAWVERLQPLLADQFRHVLPDPSRLRIADGFVVKYDA-SEQRELKPHRDGAVVSFNIALNPSSDYVGGGTWFEALDAPIVLPQGHVVSHASGLLHGGQAITAGRRYILVAFCIVEGYDTWSMRFYNQV 269
BLAST of NO28G01420 vs. NCBI_GenBank
Match: GAX28532.1 (procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 [Fistulifera solaris]) HSP 1 Score: 228.4 bits (581), Expect = 3.100e-56 Identity = 117/243 (48.15%), Postives = 156/243 (64.20%), Query Frame = 0 Query: 76 RRHVSERQIPQYLETMKLYYHNDSSKPVTPVTFNQQEDFVSYLGDEKLVAKPGEEPYKLVHVSKAPLFSPEECQAIIDECEERAAKVGWATKRHFAYPTTDVPLKELPRTLEWFNEKLQERIYPCLASNFAQALPDSSKLKVVDAFIVKYDADGGQTQLKPHRDGSVVSFNVALNPSSEFEGGGTYFKGLDDGLRIEQGHIVTHASNVLHGGHPITSGKRYILVSFVILEGFANWAMRFANLV 319 RR VSE IP Y T KL + DS + P T+ D+ SY L+ G LVH + PLFS EC I+ E E+ A + W RH +PTTD+PL ELP+T+ E ER+ P LA F LPD+S+L++ D F+VKYDA Q +LKPHRDG+V+SFN+ALNP+S++ GGGT+F L+ + + QGH+V+HAS +LHGG IT+G+RYILV+F I+EG+ W+MRF N V Sbjct: 27 RRFVSELHIPAY-RTSKLPFLLDSVTHIQPRTYQADRDYTSY-----LIQNHGG---GLVHQTNRPLFSDLECHTIVQEAEQVARQRDWTRTRHGNFPTTDLPLTELPQTMALLKETWVERLQPLLADQFRNVLPDASRLRIADGFVVKYDA-AEQRELKPHRDGAVLSFNIALNPASDYVGGGTWFAALNAPIVLPQGHVVSHASGLLHGGQAITAGRRYILVAFCIVEGYDTWSMRFYNQV 259
BLAST of NO28G01420 vs. NCBI_GenBank
Match: XP_005787457.1 (hypothetical protein EMIHUDRAFT_252684 [Emiliania huxleyi CCMP1516] >EOD35028.1 hypothetical protein EMIHUDRAFT_252684 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 156.8 bits (395), Expect = 1.200e-34 Identity = 86/179 (48.04%), Postives = 104/179 (58.10%), Query Frame = 0 Query: 125 AKPGEEPYKLVHVSKAPLFSPEECQAIIDECEERAAKV-GWATKRHFAYPTTDVPLKELPRTLEWFNEKLQERIYPCLASNFAQALPDSSKLKVVDAFIVKYDADGGQTQLKPHRDGSVVSFNVALNPSSEFEGGGTYFKGLDDGLRIEQGHIVTHASNVLHGGHPITSGKRYILVSFV 303 A G P V VS++PLFS EC+ + E AAK GW T RH A PTTDVP+ E+P L WFN + RI P LA+ F A D ++V DAF+V+Y A GGQ L H D SV+S V LN EFEGGGT+F L L GH+V LHGG PI SG RYI+ +F+ Sbjct: 165 ALAGGGPACKVVVSRSPLFSAAECERAVAAAEAHAAKSGGWTTSRHRAVPTTDVPVHEVPELLRWFNHAMAGRIAPLLAAQFRVAAAD---IRVHDAFLVRYSASGGQAHLPLHTDESVLSLTVVLN--DEFEGGGTFFADLRRSLSPPVGHLVAFHGRALHGGEPIVSGVRYIVAAFL 338
BLAST of NO28G01420 vs. NCBI_GenBank
Match: XP_005792545.1 (hypothetical protein EMIHUDRAFT_108627 [Emiliania huxleyi CCMP1516] >EOD40116.1 hypothetical protein EMIHUDRAFT_108627 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 156.4 bits (394), Expect = 1.500e-34 Identity = 86/179 (48.04%), Postives = 104/179 (58.10%), Query Frame = 0 Query: 125 AKPGEEPYKLVHVSKAPLFSPEECQAIIDECEERAAKV-GWATKRHFAYPTTDVPLKELPRTLEWFNEKLQERIYPCLASNFAQALPDSSKLKVVDAFIVKYDADGGQTQLKPHRDGSVVSFNVALNPSSEFEGGGTYFKGLDDGLRIEQGHIVTHASNVLHGGHPITSGKRYILVSFV 303 A G P V VS++PLFS EC+ + E AAK GW T RH A PTTDVP+ E+P L WFN + RI P LA+ F A D ++V DAF+V+Y A GGQ L H D SV+S V LN EFEGGGT+F L L GH+V LHGG PI SG RYI+ +F+ Sbjct: 417 ALAGGGPACKVVVSRSPLFSAVECERAVAAAEAHAAKSGGWTTSRHRAVPTTDVPVHEVPELLRWFNHAMAGRIAPLLAAQFRVAAAD---IRVHDAFLVRYSASGGQAHLPLHTDESVLSLTVVLN--DEFEGGGTFFADLRRSLSPPVGHLVAFHGRALHGGEPIVSGVRYIVAAFL 590
BLAST of NO28G01420 vs. NCBI_GenBank
Match: XP_005820683.1 (hypothetical protein GUITHDRAFT_147722 [Guillardia theta CCMP2712] >EKX33703.1 hypothetical protein GUITHDRAFT_147722 [Guillardia theta CCMP2712]) HSP 1 Score: 145.2 bits (365), Expect = 3.500e-31 Identity = 72/174 (41.38%), Postives = 109/174 (62.64%), Query Frame = 0 Query: 134 LVHVSKAPLFSPEECQAIIDECEERAAKVGWATKRHFAYPTTDVPLKELPRTLEWFNEKLQERIYPCLASNFAQALPDSSKLKVVDAFIVKYDADGGQTQLKPHRDGSVVSFNVALNPSSEFEGGGTYFKGLDDGL--RIEQGHIVTHASNVLHGGHPITSGKRYILVSFVILE 306 L+ + PL S +ECQ +I++ EE + GW T RH + TTD+P+ LPR E + + + RI + F + ++ VD F+V+Y GQ QL HRDG++++F++ LN +S+F+GGGT+F+ +DGL R EQG V H+ + HGG+PI+SG RYILV F ++E Sbjct: 273 LLGIGILPLLSQQECQLLIEDAEEHGRQHGWTTSRHKTHATTDIPIDRLPRGSELWRQSIGPRIAESIGERFGFR---AGEVTPVDVFLVRY-TGAGQNQLSVHRDGALMTFSLLLNEASDFQGGGTFFE--EDGLVFRHEQGVAVLHSGKIRHGGYPISSGSRYILVGFCLVE 440
BLAST of NO28G01420 vs. NCBI_GenBank
Match: CBN77697.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 142.5 bits (358), Expect = 2.300e-30 Identity = 70/168 (41.67%), Postives = 101/168 (60.12%), Query Frame = 0 Query: 135 VHVSKAPLFSPEECQAIIDECEERA-AKVGWATKRHFAYPTTDVPLKELPRTLEWFNEKLQERIYPCLASNFAQALPDSSKLKVVDAFIVKYDADGGQTQLKPHRDGSVVSFNVALNPSSEFEGGGTYFKGLDDGLRIEQGHIVTHASNVLHGGHPITSGKRYILVSF 302 + +S+ + SPEEC+ +I E+ + A GW T RH+A PTTD+P+ L TL WF ++ER++P LA F A ++ V DAF+V+Y+ +G Q L HRD S SF +ALN ++ GGGT+F L LR +GH ++ +LHGG P+ G RYI+ F Sbjct: 446 IFLSRERVLSPEECRGVIQAAEDYSQANGGWTTSRHYAVPTTDLPVHALKSTLPWFRSLVRERLFPALAKRFNLA-AGPRRVFVHDAFVVRYE-EGKQRHLPLHRDQSTHSFTIALNGLDQYTGGGTFFPSLGRSLRPAEGHALSFRGGILHGGDPLLKGVRYIIACF 611
BLAST of NO28G01420 vs. NCBI_GenBank
Match: KOO26743.1 (hypothetical protein Ctob_010869 [Chrysochromulina sp. CCMP291]) HSP 1 Score: 141.7 bits (356), Expect = 3.900e-30 Identity = 84/197 (42.64%), Postives = 112/197 (56.85%), Query Frame = 0 Query: 125 AKPGEEPYKLVHVSKAPLFSPEECQAIIDECEERAAKV-GWATKRHFAYPTTDVPLKELPRTLEWFNEKLQERIYPCLASNFAQ--ALPDSSKLKVVDAFIVKYDAD--GGQTQLKPHRDGSVVSFNVALNPSSEFEGGGTYFKGLDDGLRIEQGHIVTHASNVLHGGHPITSGKRYILVSFVILE------GFANW 311 A P P + V V PL SP C + E EE AA+ GW+T RH AYPTTD+P++ LPR +ER++P + + L ++++ +D F+VKY A GGQT+L HRD V++F++ LN SEFEGGGTYF+ R G V H++ V H G+PIT G RY+LV F LE GFA W Sbjct: 258 ATPYRHPMESVRV--LPLLSPAACADAVTEAEEYAAREGGWSTDRHVAYPTTDIPIRCLPR----LEALWRERLFPAVEAEARTRLGLGPATRVLPLDVFVVKYAAGVAGGQTELAVHRDNGVLTFSLLLNAPSEFEGGGTYFERAGRVYRPSLGVGVLHSALVRHAGYPITRGVRYVLVGFCGLESPALAPGFARW 448 The following BLAST results are available for this feature:
BLAST of NO28G01420 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO28G01420 ID=NO28G01420|Name=NO28G01420|organism=Nannochloropsis oceanica|type=gene|length=2491bpback to top protein sequence of NO28G01420.1 >NO28G01420.1-protein ID=NO28G01420.1-protein|Name=NO28G01420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=322bpback to top Synonyms
Publications
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